Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1443 143 4e-29 >seq1443 Length=385661 Score = 143 bits (158), Expect = 4e-29 Identities = 258/372 (69%), Gaps = 10/372 (3%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| ||| |||||||| || ||||| || || || || || ||| | |||||||| Sbjct 89075 GCCCCTCAGCAAAGAAGAGGTAGACTTTCCAATTGCGTATTCCATAGTGGTTCACCACAA 89134 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||| || ||| | || | || |||||||||||||| || ||||| |||||||| | Sbjct 89135 GATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 89194 Query 13790 CCACGTGGACTCCAAGTCC--GGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||||| || || || | | || | ||| | || || ||| || Sbjct 89195 CCACGTGGACAAAAAAGCCGAGGAGCCCTTTTTAGCCGCG--GTGATGGGCATTGCATCC 89252 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 ||||| |||||| | ||||| || |||| | | || || || | || |||||| Sbjct 89253 TGCTTTGGTAACGTCTTCGTGGCCAGCCAGCTGGAGAATGTTGTTTATGCATCTTGGAGT 89312 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGTCAA--GTGG 13964 || |||||||| ||||||| ||| ||| ||||||| || | | || || ||| Sbjct 89313 CGGGTGCAGGCTGACCTCAACTGTATGAAGGACCTGTACAGGAT---GAGTGAAAGCTGG 89369 Query 13965 AGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTG 14024 | |||| || |||| || || || ||||| ||||| |||| |||||||| || || || Sbjct 89370 AAGTACTTGATCAATCTTTGTGGTATGGATTTCCCTATCAAAACCAACCTAGAAATTGTC 89429 Query 14025 CGGGCGCTGAAG 14036 || ||| ||| Sbjct 89430 AGGAAGCTCAAG 89441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657840416235520