Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq786 251 6e-62 seq2476 113 4e-20 seq863 82.4 6e-11 >seq786 Length=828056 Score = 251 bits (278), Expect = 6e-62 Identities = 434/624 (70%), Gaps = 5/624 (1%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| |||| ||| || || | || |||||| | |||| || || | | || ||| | Sbjct 610673 TGGGGAAGG-TCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATATGATTCAGAT 610615 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | | || | ||||| | |||||||| || || || | || || |||| ||| | Sbjct 610614 AAATACGTGCATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTG 610555 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||| | || || || | || | ||| ||||| ||||| || || || ||||| | Sbjct 610554 CAATCATGGAGGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATAT 610495 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || ||||||||||| || || || || ||||| || | ||| || || ||||| | Sbjct 610494 CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAGA 610435 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137 ||| ||||| ||||| | ||||| ||| | |||||| ||||||||||| || | | Sbjct 610434 GGGCATGGCAAGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATGG 610375 Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197 | | ||||| || |||||| | ||||| ||| | | ||||||||||| || | Sbjct 610374 TTAATATTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTA 610315 Query 30198 CCCCCATCCCCGAGTAGTCTG-CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 | || |||||||| |||| ||| |||| |||| |||||||| ||||| |||||| Sbjct 610314 CTCCTTGGCCCGAGTAATCTGAATCTC-TGTCTTTGTAGTCTGCTCCAAAATGTCTCCAC 610256 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTC 30315 | ||| || || ||||| |||||||| | || | | ||| ||| ||| |||| Sbjct 610255 TAGAAACCATAAACCGGGCCCAGGTCCCATTCCTGTC-ATGCAGAGAATCCCAGGCTGTC 610197 Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 | |||| ||| ||| || ||||| ||||| || | || |||| || || | || Sbjct 610196 CGAAAAATCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGACAGTTGCTT 610137 Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30435 |||||||| ||| ||| |||||||||| ||| || | || ||||||| || || Sbjct 610136 ACCATTTGTGGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACAC 610077 Query 30436 CCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||| ||||| || ||||| Sbjct 610076 TCATTTGGTTGTGAGCAGAGGAAA 610053 >seq2476 Length=158986 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 45749 AGGCCCGTGATGTGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 45690 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || ||||||||||| || || || || ||||| || | | Sbjct 45689 ACACCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTTCC 45630 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 45629 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 45585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||| ||||||||||| || || || || |||||||| Sbjct 43729 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 43670 Query 30283 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 || || | | | || ||| ||| |||||||||| |||| ||| || ||||| | Sbjct 43669 CCCTTCCTGTC-GAGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCAT 43611 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| || | || ||||| || || ||||| | |||||||| || Sbjct 43610 CCCATATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAGCC 43562 >seq863 Length=755488 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||| || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 485713 TTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 485772 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || | ||||| ||||||| |||||| || ||| Sbjct 485773 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 485820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405769889337984