Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1045 89.7 3e-13 seq40 87.8 1e-12 seq302 86.0 4e-12 seq1071 84.2 1e-11 seq370 84.2 1e-11 seq2912 82.4 5e-11 >seq1045 Length=604390 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | |||| || || ||| |||||| || ||||| || || || Sbjct 14570 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 14629 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 14630 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 14689 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| |||| || || | || ||||| | ||| || Sbjct 14690 ATGCCCTCCTTGTCCTGGATC-TTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 14748 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || |||||||| |||||||| Sbjct 14749 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 14796 >seq40 Length=4171579 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || || | |||| || || ||| ||| || || ||||| ||||| || Sbjct 2180063 GCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 2180004 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || |||||||| || | ||||| ||||| || || Sbjct 2180003 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGG 2179944 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | |||||||| || |||||| | || || | || ||||| | |||| Sbjct 2179943 GATGCCCTCCTTATCCTGGATCTTG-GCCTTGACATTCTCGATGGTGTCACTGGGTTCCA 2179885 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || ||||| | || ||||| |||||||||||| Sbjct 2179884 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATG 2179835 >seq302 Length=1732574 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 ||| | |||||| | ||| || ||| ||||||||| ||||| ||||| ||||| | Sbjct 218483 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC--AAAGTACA-G 218427 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 | | ||||| ||||| ||||| ||||| || | | ||| ||||| || || | ||| || Sbjct 218426 C-CATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTC 218368 Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||| || |||||| |||| | || |||||| | || ||||| | | Sbjct 218367 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCAT 218308 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || || | || ||||| ||||||||||| ||| Sbjct 218307 GATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCTTG 218265 >seq1071 Length=588399 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 34522 TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAA 34581 || ||||| || || || || || || | ||||| || || ||||||||||| |||| Sbjct 405707 TGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAGATTAGC 405766 Query 34582 CGCTGTTGGTC-CGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAA 34639 | | | ||||| || || | ||||||||||| |||| |||| || || | || Sbjct 405767 CTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTCCTAGATC-TTTGCCTTGACATTCTCAA 405825 Query 34640 TTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAA 34699 | ||||| | ||| || |||| ||| || || |||||||| | || |||||||| | Sbjct 405826 TGGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGA 405885 Query 34700 TCTGCAT 34706 ||||||| Sbjct 405886 TCTGCAT 405892 >seq370 Length=1552371 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | |||| || || |||| |||||| || ||||| || || || Sbjct 218120 CCACCCCTGAGGCGGACGACCAGGTGCAGGGTGCACTCCTTCTGGATGTTGTAGTCAGAC 218061 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| | | | ||| | ||| || || Sbjct 218060 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGTTCAGCCTCTGCTTGTCAGGGGGT 218001 Query 34600 ACT-CCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| |||| ||| ||||| | ||| || Sbjct 218000 GATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCGAC 217941 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || ||||| ||||| |||||||| || |||||||| Sbjct 217940 CTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 217893 >seq2912 Length=120370 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||||||| | || |||||| ||||||| | ||||| || || || Sbjct 71279 CCACCACGAAGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGATGTTGTAGTCAGAC 71338 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || || ||||| |||| | ||||||||||| | | ||||||||| || || Sbjct 71339 AAAGTACGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTGGTCAGGAGGA 71398 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||| || |||||| Sbjct 71399 ATTCCTTCCTTATCCTGGATCTT 71421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314310918360416