Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq130 118 9e-22 seq40 111 1e-19 seq97588 98.7 9e-16 >seq130 Length=2658597 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || |||||||| || || || Sbjct 942090 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAG 942149 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || ||||| || |||||||| ||| | || || Sbjct 942150 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCATCTGACCA 942209 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | |||| |||||||| || |||| || | | ||| | || |||||||| Sbjct 942210 GCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCAGATTACAA 942269 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || || ||||| ||||| || |||| Sbjct 942270 CATCCAGAAAGAGTCCACCTTGCACCTGGT 942299 >seq40 Length=4171579 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || |||||||| Sbjct 2179835 CATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAG 2179894 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || || || || ||||| || ||||| || Sbjct 2179895 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 2179954 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || ||||||| | || |||| |||||||| Sbjct 2179955 GCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2180014 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || ||||| ||| | || |||| | || | |||||||| Sbjct 2180015 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 2180063 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || || || ||||| || Sbjct 2179608 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 2179667 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || || ||||| ||||| || ||||| || Sbjct 2179668 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAG 2179727 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 2179728 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2179787 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||| | || | |||||||||| Sbjct 2179788 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGCAT 2179837 >seq97588 Length=222 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053 || || || || || |||||||||||| | || || || || |||||||| ||| | Sbjct 222 ATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACC 163 Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 || |||| ||||| || || || || || || ||||| || ||||| || ||||| Sbjct 162 ATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGA 103 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | |||||||| || ||||||| | || |||| ||||||||||| || Sbjct 102 CTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAG 43 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||| ||| | || |||| | || | |||||||| Sbjct 42 AAAGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434324997335040