Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq786 356 2e-93 seq2476 132 4e-26 >seq786 Length=828056 Score = 356 bits (394), Expect = 2e-93 Identities = 502/705 (71%), Gaps = 0/705 (0%) Strand=Plus/Plus Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 ||||| ||| | || || || || ||| | || |||||| ||| ||||| ||| |||| Sbjct 609980 GAAGGAGGATCACACAGGCACTGGCACCTTGTCGGTGTTCAGCATGCAGGCACGACACAA 610039 Query 34207 CCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGA 34266 ||| | || |||||||| ||||| || || ||| | |||| ||||||||| || | || Sbjct 610040 CCTGAGAGGTGAATTTCCTCTGCTCACAACCAAATGAGTGTTCTGGAAGGGAGTTTTTGA 610099 Query 34267 GGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGT 34326 ||| |||||||||| | | || |||| || ||| | || || ||| ||| || Sbjct 610100 AGAGTTGCTGTGGTTTATCAAAGGCTCCACAAATGGTAAGCAACTGTCCTCCGAGGGAGT 610159 Query 34327 GAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCG 34386 || || ||||| || | ||||| | ||| ||| ||||| | ||| ||| | | | Sbjct 610160 GAGAATATGGGATGCCAATGGGTCCCTAGATTTTTCGGACAGCCTGGGATTCTCTGCATG 610219 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| | ||| |||||||||| || || ||| |||||||||| ||||| || || || Sbjct 610220 ACAGGAATGGGACCTGGGCCCGGTTTATGGTTTCTAGTGGAGACATTTTGGAGCAGACTA 610279 Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGA 34506 | || || | || || ||||| || |||| ||||||||||| | ||||| || Sbjct 610280 CAAAGACAGAGATTCAGATTACTCGGGCCAAGGAGTAGACCAGCTGCAAAAAGTGATTGA 610339 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 |||| | || |||||||||||||||| | || || || |||||||| || || Sbjct 610340 CACCATCAAAACCAACCCTGATGACAGAATATTAACCATATGTGCCTGGAACCCAAAAGA 610399 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 || || |||||||| | || || ||||| ||||||| |||||||| || | ||||| Sbjct 610400 CCTTCCCCTGATGGCAATGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTAAATGG 610459 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||||||| ||||| || || || | || ||||| ||||| | || ||||| ||||| Sbjct 610460 GGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAA 610519 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 |||||| |||| || ||||| || | |||||| || || || || || || || Sbjct 610520 CATTGCCTGTTATGCCCTGCTTACCTCCATGATTGCACACATCACAGGCCTGAAGCCAGG 610579 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 || | || ||||| ||||| |||| | ||| || ||||| || ||||||| || | Sbjct 610580 TGATTTTGTCCATACTTTGGGAAATGCACGTATTTATCTGAATCATATCGAGCCACTGAG 610639 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 || ||||| || ||||| || |||| | ||| |||||||||| Sbjct 610640 AATTCAGCTTCAGCGAGAACCAAGACCTTCCCCAAAGCTCAAAAT 610684 Score = 356 bits (394), Expect = 2e-93 Identities = 502/705 (71%), Gaps = 0/705 (0%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||| | |||| || ||||| || ||||| || | || ||||||| Sbjct 610684 ATTTTGAGCTTTGGGGAAGGTCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATA 610625 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || ||||| || ||| | |||| ||||| ||||| || | || || || || || Sbjct 610624 TGATTCAGATAAATACGTGCATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCT 610565 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || || |||||| | || ||||| || |||| ||||||||||| ||||| || Sbjct 610564 GTGATGTGTGCAATCATGGAGGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCC 610505 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||||| ||||| || | || || || ||||| |||||||||||||| | || ||| Sbjct 610504 AGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAG 610445 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 ||||| ||||||| ||||| || || | |||||||| || || || || |||||||| Sbjct 610444 AATTGACAGAGGGCATGGCAAGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAG 610385 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || || || | |||||||||||||||| || | |||||| ||||| | ||| Sbjct 610384 GCACATATGGTTAATATTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGC 610325 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 |||||||| |||| || ||||| || || | || || | || || || ||||| Sbjct 610324 AGCTGGTCTACTCCTTGGCCCGAGTAATCTGAATCTCTGTCTTTGTAGTCTGCTCCAAAA 610265 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCC 6973 |||||||||| ||| || || |||||||||| ||| | |||| | | | ||| ||| Sbjct 610264 TGTCTCCACTAGAAACCATAAACCGGGCCCAGGTCCCATTCCTGTCATGCAGAGAATCCC 610205 Query 6974 CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAG 7033 | ||||| ||| ||| | ||||| | || ||||| || |||| ||| ||| || Sbjct 610204 AGGCTGTCCGAAAAATCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGAC 610145 Query 7034 AGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTC 7093 || | ||| || |||| || | | |||||||||| ||| || | || |||||| Sbjct 610144 AGTTGCTTACCATTTGTGGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTC 610085 Query 7094 CAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGT 7153 ||| |||| | ||| || || ||||| |||||||| || | ||||||| ||| ||||| Sbjct 610084 CAGAACACTCATTTGGTTGTGAGCAGAGGAAATTCACCTCTCAGGTTGTGTCGTGCCTGC 610025 Query 7154 GTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTC 7198 ||| |||||| || | ||| || || || || | ||| ||||| Sbjct 610024 ATGCTGAACACCGACAAGGTGCCAGTGCCTGTGTGATCCTCCTTC 609980 >seq2476 Length=158986 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| |||||||| || | ||| Sbjct 45577 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGAAAAT 45636 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| ||||| || || || | || ||||| ||||| | || ||||| ||| Sbjct 45637 GGGGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTC 45696 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || ||||| || |||||||| || || Sbjct 45697 AACATTGCCAGCTATGCCCTGCTTACCTACATGATAGCACA 45737 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || ||||| || || || ||||||||||| ||||| || | ||| Sbjct 45737 TGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 45678 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || || || ||||| |||||||||||||| | || |||||||| Sbjct 45677 ATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTTCCACATAGAATTGA 45618 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || |||||||| || ||||| Sbjct 45617 CAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 45577 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||| || ||||| || | ||||| | Sbjct 43566 CCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATATGGGATGCCAATGGGTCCC 43625 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| ||| |||||| | ||| ||| | |||| |||| || ||| ||||||| || | Sbjct 43626 GAGATTTTTTGGACAGCCTGGGATTCTCTGCTCGACAGGAAGGGGACCTGGGCCCAGTTT 43685 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| ||||| || || || Sbjct 43686 ATGGTTTCCAGTGGAGACATTTTGGAGCAGACTA 43719 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| || || || ||||||| ||| || |||| Sbjct 43719 TAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 43660 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 |||| | ||| ||| | |||||| ||| ||||| ||||| | || ||||| || || Sbjct 43659 CGAGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTC 43600 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 43599 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGG 43566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447650790781440