Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq88 192 5e-44 seq288 122 7e-23 >seq88 Length=2985627 Score = 192 bits (212), Expect = 5e-44 Identities = 187/241 (78%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||| ||||| ||| || Sbjct 771032 ATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTATAGCAAA 771091 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| ||| |||| || ||||| ||||| | ||| | | ||||| |||||||| ||| Sbjct 771092 ACCCATGGGCTTGTAGTCCAGCCTGCATATAGAGACAGGGTTAACATCACTGAGCTGGGA 771151 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || |||||||||||||||||| |||| ||||| || ||||||| | Sbjct 771152 CTCTGGAACACAAGCATCACCTTCTGGAACACAACACTGGACGATGAGGGCTGCTACATG 771211 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCTTTTT 1529 ||| | || || || |||| ||||||||||| ||||||| || || || ||||||| | Sbjct 771212 TGTCTCTTCAATACGTTTGTTTCTGGGAAGATCTCAGGAACAGCCTGCCTCACCCTTTAT 771271 Query 1530 G 1530 | Sbjct 771272 G 771272 >seq288 Length=1789135 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 607246 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 607305 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 607306 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 607365 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 607366 ATCGCCCTGTGGATGACCGA 607385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413925425657728