Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq302 113 3e-20 seq1824 107 1e-18 seq2912 104 2e-17 seq420 100 2e-16 seq40 100 2e-16 seq1045 91.5 1e-13 seq306 89.7 3e-13 seq130 89.7 3e-13 seq59 89.7 3e-13 seq97588 87.8 1e-12 seq1255 86.0 4e-12 >seq302 Length=1732574 Score = 113 bits (124), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| ||||| |||| |||||||||| || Sbjct 218266 AAGATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCATGATCGAAGTTGAACCC 218325 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| | |||| |||| || || || || ||||| | || || || Sbjct 218326 TCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 218385 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| || || ||||||||||| | | ||||| |||||| Sbjct 218386 CAGCAGAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGCTGTACTTT----GATTAC 218441 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 218442 AACATCCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 218479 >seq1824 Length=278459 Score = 107 bits (118), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| || |||||||| |||| ||||| ||||| || Sbjct 167185 AAGATGCAGATTTTCGTGAAGACCCTTACAGGAAAAACCGTCACGCTCGAGGTTGAACCC 167126 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTG-ACAAAGAAGGTGTACCGCCAGA 23726 | |||||| | |||| || ||| || ||| | | || ||||| | || || || Sbjct 167125 TCTGACACTATAGAAA-ATGTAAAGGCCAAGATGCAGAATAAGGAAGGAATTCCTCCTGA 167067 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | | | ||||| || || ||||||||||| | | ||||| || || Sbjct 167066 CCAACAGAGACTGGTCTTTGCTGGTAAGCAACTGGAAGATGGCCATACTTT----GACTA 167011 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||| ||||| |||||||| | ||| | || || || Sbjct 167010 CAACATCCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 166972 >seq2912 Length=120370 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| | ||| ||||| || || ||||| | ||| || Sbjct 71508 AAGATGCAGATTTTCATGAAGACCCTTATGGGGAAAACCATTACACTCGAGGATGAACCC 71449 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | |||| |||| || || || || ||||| | || || || Sbjct 71448 TCGGACACCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 71389 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | ||||||||||| | |||||||||| || || ||||| || ||| Sbjct 71388 CAACAGAGGCTGATATTTGCCGGGACGTAACTGGAAGATGACCGTACTTTGTCTGACTAC 71329 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| | ||| |||||||| Sbjct 71328 AACATCCTAAAGGAGTCCAC 71309 >seq420 Length=1427458 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 1349897 AAGATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGATCGAGGTTGAACCC 1349838 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| |||| || || | || ||||| | || || || Sbjct 1349837 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCCCCTGAC 1349778 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | ||| | | || ||||| || || ||||||||||| | | ||||| || ||| Sbjct 1349777 CGGCAGAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGCCATACTTTGTCTGACTAC 1349718 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 1349717 AACATCCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 1349680 >seq40 Length=4171579 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || || || || || Sbjct 2179605 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 2179664 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || ||||| || | || || || Sbjct 2179665 AGTGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGAC 2179724 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||||||||| || |||||||| | |||||| | |||||| Sbjct 2179725 CAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 2179784 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 2179785 AACATCCAGAAAGAGTCCAC 2179804 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || || || || ||| Sbjct 2179836 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGT 2179895 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || || || | || || || || Sbjct 2179896 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGATAAGGAGGGCATCCCCCCCGACCA 2179954 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || |||||||| | |||||| | |||||||| Sbjct 2179955 GCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2180014 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 2180015 CATCCAGAAAGAGTCCAC 2180032 >seq1045 Length=604390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || ||||| || || || || ||| Sbjct 14797 AATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 14738 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| || || | || || || | Sbjct 14737 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACC 14679 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||||||||| || |||||||| | ||||| | ||| |||| Sbjct 14678 AGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 14619 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 14618 ACATCCAGAAGGAGTCCAC 14600 >seq306 Length=1726031 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| ||||||| || || |||||||| || || || || |||||| | || || || | Sbjct 299600 TAACATGCAGAGCTTTGTGAAAACCCTGACAGGCAAGACCATCACTTTTGAGGTAGAGCC 299659 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 || |||||| | || ||| | || || || | | || || ||||| | || || Sbjct 299660 CAGTGACACTATCGAGAATGTCAAGACCAAGA-TCCAAGATAAGGAAGGCATTCCACCTA 299718 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | || ||| | | ||||||||||| || || ||||| || | |||||| | || | Sbjct 299719 ACCAGCAGAGACTGATATTTGCCGGTAAGCAGCTGGAGGATGGACGCACCCTGTCAGACT 299778 Query 23786 ACAACATACAAAAAGAGTCCACATTACA 23813 |||||||| |||| |||||||| || || Sbjct 299779 ACAACATATAAAATGAGTCCACCTTGCA 299806 >seq130 Length=2658597 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| |||||||| || || || ||||| ||||| || || |||||||| || || || | Sbjct 942087 TAACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCC 942146 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 || ||||| | || ||| | || | || | | || || ||||| | || | | Sbjct 942147 CAGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGATAAGGAAGGCATTCCATCTG 942205 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | || ||| | | |||||||||||||| || ||||| || | |||| | |||| Sbjct 942206 ACCAGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCAGATT 942265 Query 23786 ACAACATACAAAAAGAGTCCACATTACA 23813 ||||||| || ||||||||||| || || Sbjct 942266 ACAACATCCAGAAAGAGTCCACCTTGCA 942293 >seq59 Length=3472997 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| |||||||| || || || ||||| ||||| || || |||||||| || || || | Sbjct 2114221 TAACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCC 2114162 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 || |||| | || ||| | || | || | | || || ||||| | || || | Sbjct 2114161 CAGTCACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGATAAGGAAGGCATTCCACCTG 2114103 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | |||||| | | |||||||||||||| || ||||| || | | ||| | || | Sbjct 2114102 ACCAACAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCCCACCCTGTCAGACT 2114043 Query 23786 ACAACATACAAAAAGAGTCCACATTACA 23813 ||||||| || ||||||||||| || || Sbjct 2114042 ACAACATCCAGAAAGAGTCCACCTTGCA 2114015 >seq97588 Length=222 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 23617 ATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACT 23676 |||||||| || ||||| || || || || ||||| || || || || ||| ||||| Sbjct 222 ATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACC 163 Query 23677 GTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCG 23735 | || ||| | || | || | | || || || || | || || || || ||||| Sbjct 162 ATCGAGAATGTCAAGGCCAAGA-TCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCG 104 Query 23736 TTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACA 23795 | || ||||||||||| || |||||||| | |||||| | ||||||||||| || Sbjct 103 ACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCA 44 Query 23796 AAAAGAGTCCAC 23807 ||||||||||| Sbjct 43 GAAAGAGTCCAC 32 >seq1255 Length=466764 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| || ||||| | || ||| | ||||| ||||| ||||| || Sbjct 71734 AAGATGCAGATTTTCAAGAAGACCCTTTCAGGGAAAGCCATCACACTCGAGGTTGAACCC 71675 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| |||| || || | | ||||| | || || || Sbjct 71674 TCGGACACTATAGAAAATCTAAAGGCCAAGATCCAGCATATGGAAGGAATTCCTCCTGAC 71615 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | |||| || || || || |||||||||| | | ||||| | ||| ||| Sbjct 71614 CAGCAGAGGCTAATCTTCGCTGGTAAGCAACTGGAAGGTGGCCATACTTT-GTCGACTAC 71556 Query 23788 AACATACAAAAAGAGTCCA 23806 ||||| ||||| ||||||| Sbjct 71555 AACATCCAAAAGGAGTCCA 71537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337559949209216