Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq786 237 1e-57 seq2476 129 5e-25 seq863 82.4 6e-11 >seq786 Length=828056 Score = 237 bits (262), Expect = 1e-57 Identities = 424/623 (68%), Gaps = 3/623 (0%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 |||| |||| ||| || || | || |||||||| ||||| || || | || | || | Sbjct 610673 TGGGGAAGG-TCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATATGATTCAGAT 610615 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | | |||| ||||| || |||||||| || || || | || || |||| ||| | Sbjct 610614 AAATACGTGCATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTG 610555 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||| | || || || | || | ||| ||||| |||||||| || || ||||| | Sbjct 610554 CAATCATGGAGGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATAT 610495 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 | |||||||||||||| || ||||| || ||||| || | ||| || || ||||| | Sbjct 610494 CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAGA 610435 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909 ||||||||| ||||| | ||||| || | |||||| |||||||||||||| | | Sbjct 610434 GGGCATGGCAAGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATGG 610375 Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969 | | ||||| || |||||| | ||||| ||| | | ||||||||||| || | Sbjct 610374 TTAATATTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTA 610315 Query 29970 CCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACT 30029 | || |||||||| |||| | ||||| ||||||| Sbjct 610314 CTCCTTGGCCCGAGTAATCTGAATCTCTGTCTTTGTAGTCTGCTCCAAAATGTCTCCACT 610255 Query 30030 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCC 30088 ||| || || ||||| |||||||| | || | | ||| ||| ||| ||||| Sbjct 610254 AGAAACCATAAACCGGGCCCAGGTCCCATTCCTGTC-ATGCAGAGAATCCCAGGCTGTCC 610196 Query 30089 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30148 |||| ||| ||| || ||||| ||||| || | || |||| ||| || | || Sbjct 610195 GAAAAATCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGACAGTTGCTTA 610136 Query 30149 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30208 |||||||| ||| ||| |||||||||| ||| || | || ||||||| || || Sbjct 610135 CCATTTGTGGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACACT 610076 Query 30209 CTCTTGGTCGTGAGGAGGGGAAA 30231 | ||||| ||||| || ||||| Sbjct 610075 CATTTGGTTGTGAGCAGAGGAAA 610053 >seq2476 Length=158986 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | |||||||| ||||| |||||| Sbjct 45749 AGGCCCGTGATGTGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 45690 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || |||||||||||||| || ||||| || ||||| || | | Sbjct 45689 ACACCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTTCC 45630 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || || ||||| | ||||||||| ||||| || ||||| || Sbjct 45629 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 45586 >seq863 Length=755488 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 485713 TTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 485772 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||||| |||||| |||||| Sbjct 485773 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 485820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405622885156672