Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1138 95.1 1e-14 seq474 95.1 1e-14 >seq1138 Length=537340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||||||||| || || || || ||||| ||||||||||| ||||| || ||| Sbjct 333912 TCTTTAATATAAGTGTCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCA 333971 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | || ||||| ||||||||||| | | ||||| Sbjct 333972 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATC 334026 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || ||||| || | |||||||| | || | ||| || Sbjct 332745 TCGTCTCTGCTAATGAGCTCATTGGAAAAGGTGAGGCCGGGCATCAGTCCCCGCTTCTTG 332804 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || || || ||||| ||||| || Sbjct 332805 AGCCAGAATATTGATGCAAAAGAACCAGAGAAGAAGATCCCCTCCACGGCAGCAAAGGCC 332864 Query 4692 AC 4693 || Sbjct 332865 AC 332866 >seq474 Length=1313924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || |||||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 1043561 TGATACTCAGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 1043620 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 1043621 ATAAAATCAAAGGGATT 1043637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| || || || || ||||||||||| || || || || | Sbjct 1058812 AAAATCTT---ACCAAGTTTTCATTGACAATCCCATCACTGGCTGCGAAGAAAGCTAACA 1058868 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 |||| || || || | || ||||| | |||||| || |||||||| || | || || | Sbjct 1058869 CATGGGAGATGAAATGCTTCTCGTCTGACTTAAGCTTGTTCCAGTGAGGGAGGTCCTTGG 1058928 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 1058929 ATAAGTCAAC 1058938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426481500187616