Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq786 260 1e-64 seq2476 113 3e-20 >seq786 Length=828056 Score = 260 bits (288), Expect = 1e-64 Identities = 436/624 (70%), Gaps = 5/624 (1%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| |||| ||| || || | || |||||| | |||| || || | |||| ||| | Sbjct 610673 TGGGGAAGG-TCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATATGATTCAGAT 610615 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | | || | ||||| || |||||||| || || || | || || |||| ||| | Sbjct 610614 AAATACGTGCATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTG 610555 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||| | || || || | || | ||| ||||| ||||| || || || ||||| | Sbjct 610554 CAATCATGGAGGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATAT 610495 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || ||||||||||| || || || || ||||| |||| || || || ||||| | Sbjct 610494 CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAGA 610435 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 ||| ||||| ||||| | ||||| ||| | |||||| ||||||||||| || | | Sbjct 610434 GGGCATGGCAAGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATGG 610375 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 | | ||||| || |||||| | ||||| ||| | | ||||||||||| || | Sbjct 610374 TTAATATTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTA 610315 Query 27464 CCCCCATCCCCGAGTAGTCT-ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAT 27522 | || |||||||| ||| | ||| |||| |||| |||||||| ||||| ||||| Sbjct 610314 CTCCTTGGCCCGAGTAATCTGAATCTC-TGTCTTTGTAGTCTGCTCCAAAATGTCTCCAC 610256 Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTC 27581 | ||| || || ||||| |||||||| | || | | ||| ||| ||| |||| Sbjct 610255 TAGAAACCATAAACCGGGCCCAGGTCCCATTCCTGTC-ATGCAGAGAATCCCAGGCTGTC 610197 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 | |||| ||| ||| || ||||| ||||| || | || |||| ||| || | || Sbjct 610196 CGAAAAATCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGACAGTTGCTT 610137 Query 27642 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 27701 |||||||| ||| ||| |||||||||| ||| || | || ||||||| || || Sbjct 610136 ACCATTTGTGGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACAC 610077 Query 27702 CCTCTTGGTCGTGAGGAGGGGAAA 27725 | ||||| ||||| || ||||| Sbjct 610076 TCATTTGGTTGTGAGCAGAGGAAA 610053 >seq2476 Length=158986 Score = 113 bits (124), Expect = 3e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 45749 AGGCCCGTGATGTGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 45690 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| || || || || ||||| |||| Sbjct 45689 ACACCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTTCC 45630 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 45629 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 45585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369015648266912