Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq275 127 3e-24 seq10632 123 3e-23 seq1179 123 3e-23 seq1138 89.7 7e-13 seq5018 84.2 3e-11 >seq275 Length=1849296 Score = 127 bits (140), Expect = 3e-24 Identities = 241/345 (70%), Gaps = 21/345 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| || || ||| ||||| | |||||||| |||| | | || ||||| Sbjct 1496921 TCCAGTGGAGCCGAAACCTCCTGAGC--CCCTTTCAGTGTCATCCATTGTTTCAACTTCT 1496864 Query 45934 T-TCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | | || |||| |||| | || |||| | | || || || || |||| |||||| | || Sbjct 1496863 TCTAAGTTCAG-ATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 1496805 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 ||||||||| | ||||||||| || ||| || |||| ||||||||||| | Sbjct 1496804 TATTTCAAACTTCTCTTTTCCAAAGTTAGACAGCCCAACACCAACATTCCCTCTATAAAC 1496745 Query 46053 TTCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGG 46109 ||||||||| || || |||| ||||| || |||| | || ||||| | || Sbjct 1496744 TTCATCTATGACACCGGCTCCTACATCTGTGAAGTGCTTTACTGCCAAGCCAGACCATGG 1496685 Query 46110 AGCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165 || || |||||||||| ||||| || | || ||| |||| |||||||| | | Sbjct 1496684 AGTTACTCTTCCATAACACCCAGAA----GGAACAGCTATCTGAATGTCTGTTTTCA-GA 1496630 Query 46166 ATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208 || |||||||| ||| || || ||||| || || |||||||| Sbjct 1496629 AT-GGCTTTCTCCATAGGCGGTATTGTATATTCATAGGCACTGTA 1496586 >seq10632 Length=3166 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 1720 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 1661 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 1660 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1601 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 1600 TTTCTTACACCAT 1588 >seq1179 Length=509559 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 478446 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 478387 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 478386 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 478327 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 478326 TTTCTTACACCAT 478314 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| ||| |||| || || ||||| || | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | | |||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 |||||| |||||||| | ||| || | | ||| || | ||||| || Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGG 481838 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 466875 GTCCCAGCATTGAACAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 466816 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || || || ||||| || || | || | ||||||| Sbjct 466815 TATGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 466756 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 466755 ATATGCTGTGGTCTTTCAGCC 466735 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || |||||||| |||||||||||| Sbjct 472226 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 472167 Query 77985 CAGTC 77989 ||||| Sbjct 472166 CAGTC 472162 >seq1138 Length=537340 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850 ||| ||||| |||| || | |||| ||| ||| |||| ||||| || ||||| Sbjct 330849 TTAGAAGTCCGCATCCAAGGTAAAAGAATTCTCTG-TTGAATTCGACATCACCCCCATCC 330907 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | |||||||| ||||| || ||||| || || || || || ||||| | ||| || |||| Sbjct 330908 TCTGATATTCCCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTTTT 330967 Query 47911 CCATAAAATCAAATGGATT 47929 |||| || ||||||||||| Sbjct 330968 CCATGAAGTCAAATGGATT 330986 >seq5018 Length=33222 Score = 84.2 bits (92), Expect = 3e-11 Identities = 228/343 (66%), Gaps = 16/343 (5%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| || || ||| | | | |||||||| |||| || | || ||||| | Sbjct 31974 TCCAGTGGAGCCGAAACCTCCCGAGCCCCTTTCAGTGTCATCGAGTGTTTCAACTTCTTC 32033 Query 45936 CAGATCAGGATAATATATAC-GTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTA 45994 | || |||||| ||| | ||| | | || || | || |||| ||||| | || | Sbjct 32034 TAAGTCTGGATAAAATAACCTGTTCACAAATGAGCTATGCAATTCCATCACATTTTTTAA 32093 Query 45995 TTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTT 46054 |||| | | ||||||||| || | ||| | || ||| ||||||||||||||| Sbjct 32094 CTTCAGACTTCTCTTTTCCAAAGTTAAACAGCACAACACCATCATTCCCTCTATAATCTT 32153 Query 46055 CATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGGAG 46111 | ||||| | || ||| | ||| | | |||| | || ||||| | |||| Sbjct 32154 CGTCTATGGCACCGGATCCTAAATCTACAAGGTGCTTTACTGCCAAGCCAGAGCATGGAG 32213 Query 46112 CTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAAT 46167 || |||||||||| ||||| | | || ||| |||| |||| ||| | |||| Sbjct 32214 ATACTCTTCCATAACACCCAGAA----AGAACAGCTATCTGAATGTCTGCTTTCA-CAAT 32268 Query 46168 CTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208 |||||||| ||| | || ||||| || || |||||||| Sbjct 32269 -AGCTTTCTCCATAGGTTGTATTGTATATTCATAGGCACTGTA 32310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693720993889280