Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10632 127 3e-24 seq1179 127 3e-24 seq1492 98.7 1e-15 >seq10632 Length=3166 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 1720 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 1661 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 1660 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1601 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 1600 TTTCTTACACCAT 1588 >seq1179 Length=509559 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 478446 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 478387 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 478386 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 478327 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 478326 TTTCTTACACCAT 478314 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| |||||||| |||||||| ||||| || |||||||| || ||| Sbjct 466875 GTCCCAGCATTGAACAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 466816 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 466815 TATGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 466756 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 466755 ATATGCTGTGGTCTTTC 466739 Score = 116 bits (128), Expect = 5e-21 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | | |||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTT 75619 |||||| |||||||| | ||| || | | ||| || | ||||| || ||||| Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGG--GATTT 481833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 462141 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGACACAGCAATCCTGGCTGCTAAGATG 462082 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || | |||||| | | Sbjct 462081 GCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCAGT 462022 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 || | || || || || |||| || ||||| || |||||||||| |||| Sbjct 462021 TCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGGTGATTT 461970 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 |||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| |||||| Sbjct 472235 TATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACAC 472176 Query 76571 ATCAATGACCACTC 76584 ||||||||||| || Sbjct 472175 ATCAATGACCAGTC 472162 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | |||||| || || | || | || | ||||| || || || || || || Sbjct 474957 GAGCCCTCATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAA 474898 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| ||||| || || | |||||| || | || | ||||| | || || Sbjct 474897 GCTCCATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGG-GCTTCTGGGCTCTC 474839 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||| ||||| | || || || ||||||||||| || || || ||||| ||||| || Sbjct 474838 AAATGGATATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGG 474779 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 474778 CCGATGGCGTTTATTTGA 474761 >seq1492 Length=368978 Score = 98.7 bits (108), Expect = 1e-15 Identities = 185/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 179183 TTTGCTAACACAGATGGTGGGTATTTGTTCATTGGATTGGATGGAAAAACAAATAAAGTA 179242 ||||| ||||| || || || ||| |||| ||||| ||| ||| ||| | ||| || || Sbjct 344474 TTTGCCAACACGGACGGAGGATATCTGTTTATTGGTTTGAATGAAAAGAAAAAACAAATA 344415 Query 179243 ATTGGATTCAATGCGGGTAA-AGAATACATTGATATGATAAGTCATGAGATAGAAAAACG 179301 ||||| || || || | | | |||| || |||| || |||| ||| ||||| || | Sbjct 344414 ATTGGCTTTAAAGCAGATGAGAGAAAAC-TTGAGGTGCTAAGGAGTGAAATAGAGAAGTG 344356 Query 179302 TATTAGAGGACTTCATGTTGTACACTTTTGTGAGAAAAAAGAGGATATCAAGTATGGATA 179361 ||| || || | ||| ||||| |||||| | | ||| | || ||||| || Sbjct 344355 CATTGGACACCTGCCTGTCACTCACTTCTGTGAGGAGGAGGAGAAGATAAAGTACACATG 344296 Query 179362 TAGATTCATCAAGGTATATACACCTGGTAGTGAGAATTCATCAACATACGTGTGTGCTAT 179421 | ||||||| | || | | || || | || | ||||| | || |||||| | Sbjct 344295 CAAATTCATCCAAGTCCACAGACAAGGAACTGTGTGTTCAT------ATGTCTGTGCTCT 344242 Query 179422 CAAAGTAGAGAGATGTTGTTGTGCTGTGTT 179451 || ||| ||||||| ||| ||||||||||| Sbjct 344241 CAGAGTGGAGAGATTTTGCTGTGCTGTGTT 344212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711961672304640