Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq55 156 6e-33 seq1852 107 3e-18 >seq55 Length=3648298 Score = 156 bits (172), Expect = 6e-33 Identities = 206/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || || || |||| || || |||||| ||||||||||| | || | |||| |||| Sbjct 3165079 AAAGGGCAGCCCTGCACATTATTACAGATGAGAGACTGAATTGAGGCAGTGTTGATGATC 3165020 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| || || ||||| ||||||||||| || || |||||| Sbjct 3165019 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 3164960 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| |||||||| || || || | || | ||| |||| || ||| Sbjct 3164959 TTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCGAGTTCTACCATGGTCTCCCCAAAG 3164900 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||||||||||| | | | ||||||||||| || |||| | Sbjct 3164899 ATAGCATCTGGACGAGGCTTTTCCACCAGCAGGGCAGGGTACAGCTCCATGGCATCGATG 3164840 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | | || ||||| || ||||| ||||||| Sbjct 3164839 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCTG 3164794 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| |||||| | || ||||| | ||| ||| | || Sbjct 3162114 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGTTTCTGATCTGTCTTGAA 3162055 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || | ||| |||||||| Sbjct 3162054 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCTTGGGGATC 3161995 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | |||| |||||| |||||||| ||| Sbjct 3161994 AGGGATGAACTTTCTCCTTAGAAGAACTTTTTCCAGAAC 3161956 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| || || || | || || ||||| || || | Sbjct 3161407 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 3161348 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||||||||| |||||||||||| || | |||| | | ||||| | Sbjct 3161347 TAGTAGGAGAGATTGGAGAAGGCTTCCCAGCTTTTATAACCATAGTGCACATTGTAAGTT 3161288 Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053 || || ||||||||||||| ||||| Sbjct 3161287 GGTGGACTGTCAATCAAATGTGATCT 3161262 >seq1852 Length=271539 Score = 107 bits (118), Expect = 3e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| || | ||||| || ||| || Sbjct 7790 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATATTCTGGGGAACAAATGGGATT 7849 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | || || |||||||| || |||||||| | ||| | || ||||| || ||||| Sbjct 7850 TCCTAGAAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGAT 7909 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| || |||||||| | | || | || | ||| | ||| |||| ||| Sbjct 7910 GGAGTTGGGCTGGCACTTTTCCAGAAGCAGCCCCGGATAGAACTCTAAAGCGTCGATGTC 7969 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| || || | || || || || ||||| || |||| Sbjct 7970 ACCGTATAGCTCCTCCAACTCAGCGGCCATTTCCTTCTCCCCTG 8013 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || |||||||| ||| || || Sbjct 21595 TCACCTATAAGGATGAGACGAGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGGTGC 21654 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 |||| ||||| | |||||||| | |||||| |||| | |||||| |||| | | | Sbjct 21655 TCTTCCTTCAGCAAGTCGCACACGCGGTTGTGCTCCCGCACCCAGATCGTGGAGATGACC 21714 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || ||||| || | || ||||| | || || || ||||||| Sbjct 21715 ATCAGCCCCGGAAGCAAACCAAACACTTCCTGGCCCACAGCCA 21757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715898693294080