Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq40 174 4e-38 seq97588 168 2e-36 seq302 143 6e-29 seq1824 140 8e-28 seq1045 140 8e-28 seq130 113 1e-19 seq8911 105 2e-17 seq59 104 6e-17 seq370 102 2e-16 >seq40 Length=4171579 Score = 174 bits (192), Expect = 4e-38 Identities = 174/223 (78%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| ||||||| |||| |||||||| || || || || || || |||||||| ||| Sbjct 2179599 AAGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAG 2179655 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| |||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 2179656 GTGGA--GCCCAGTGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCA 2179713 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 |||| || |||||||| ||||| ||||| ||||| || ||||| |||||||| | |||| Sbjct 2179714 TCCCCCCCGACCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTC 2179773 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | ||||| ||| |||| ||||| || || ||||| || || Sbjct 2179774 TTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 2179816 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || |||||||| ||||||||| | ||| Sbjct 2179839 CAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGAC 2179898 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| ||||| || || || ||||| || |||||||| Sbjct 2179899 ACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAG 2179958 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| || Sbjct 2179959 CGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATC 2180018 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || ||||| || || Sbjct 2180019 CAGAAAGAGTCCACCCTGCACCTGGT 2180044 >seq97588 Length=222 Score = 168 bits (186), Expect = 2e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||||||||| || || || || || || |||||||| ||||||||| | |||||| Sbjct 222 ATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACC 163 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 |||||||| ||||| ||||| ||||| || || || ||||| || |||||||| ||| Sbjct 162 ATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGA 103 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| |||| Sbjct 102 CTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAG 43 Query 178107 AAAGAATCAACACTGCATCTTGT 178129 ||||| || || ||||| || || Sbjct 42 AAAGAGTCCACCCTGCACCTGGT 20 >seq302 Length=1732574 Score = 143 bits (158), Expect = 6e-29 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || ||||| |||| |||| || ||| ||||||| Sbjct 218272 CAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCATGATCGAAGTTGAACCCTCAGAC 218331 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| |||||||| Sbjct 218332 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAG 218391 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || || || |||||||| | ||| | ||||| ||| || Sbjct 218392 AGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGCTGTACTTT----GATTACAACATC 218447 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 218448 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 218482 >seq1824 Length=278459 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||||||||| |||| |||||||| ||| ||| ||| Sbjct 167179 CAGATTTTCGTGAAGACCCTTACAGGAAAAACCGTCACGCTCGAGGTTGAACCCTCTGAC 167120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||| | || |||||||| ||||| ||||| || Sbjct 167119 ACTATAGAAAATGTAAAGGCCAAGATGCAGAATAAGGAAGGAATTCCTCCTGACCAACAG 167060 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||| || || || || || |||||||| ||| | || || ||| || Sbjct 167059 AGACTGGTCTTTGCTGGTAAGCAACTGGAAGATGGCCATACTTT----GACTACAACATC 167004 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 167003 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 166969 >seq1045 Length=604390 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 14565 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGTG 14508 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| || || ||||| || ||||||| Sbjct 14507 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 14448 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | | || |||| || ||| Sbjct 14447 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAACA 14388 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 14387 TCCAGAAGGAGTCTACCCTGCACCTGGT 14360 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 14793 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGTG 14736 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| || || ||||| || ||||||| Sbjct 14735 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 14676 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 14675 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 14616 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 14615 TCCAGAAGGAGTCCACCCTGCACCTGGT 14588 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || ||||| ||||| |||||||| ||||| || | ||| Sbjct 13881 CAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGTGAC 13822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| | ||| |||||||| || || ||||| || |||||||| Sbjct 13821 ACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 13762 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | | || |||| || ||| || Sbjct 13761 AGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAACATC 13702 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 13701 CAGAAGGAGTCTACCCTGCACCTGGT 13676 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || ||||| ||||| |||||||| ||||| || | ||| Sbjct 14109 CAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGTGAC 14050 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| | ||| |||||||| || || ||||| || |||||||| Sbjct 14049 ACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 13990 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | | || |||| || ||| || Sbjct 13989 AGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAACATC 13930 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 13929 CAGAAGGAGTCTACCCTGCACCTGGT 13904 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || ||||| ||||| |||||||| ||||| || | ||| Sbjct 14337 CAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGTGAC 14278 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| | ||| |||||||| || || ||||| || |||||||| Sbjct 14277 ACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 14218 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | | || |||| || ||| || Sbjct 14217 AGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAACATC 14158 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 14157 CAGAAGGAGTCTACCCTGCACCTGGT 14132 >seq130 Length=2658597 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 942094 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 942151 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || || ||||| || || | ||||||| Sbjct 942152 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCATCTGACCAGC 942211 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || ||||| || ||||| || ||||| | || || | ||||| ||| Sbjct 942212 AGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCAGATTACAACA 942271 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 942272 TCCAGAAAGAGTCCACCTTGCACCTGGT 942299 >seq8911 Length=5159 Score = 105 bits (116), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 15/223 (7%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATC-ACCCTCGAG 177968 |||| |||| || |||| ||||||||||| || || || || || || ||| | ||| Sbjct 1435 AGGTCAAAAGGC---AAATCTTCGTGAAAACCCTGACTGGCAAGACAGTCCACCTTAGAG 1379 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| ||||||||||||| ||||| ||||| | ||| ||||| || | Sbjct 1378 GTGGA--GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCGGGATAAAGAGGGCA 1321 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 || | || ||| || ||||| |||| ||| | || || || |||||||| | Sbjct 1320 TCACCCCCCCCCAACATCGACTCATCTCTGCCAGCAAGCAACTGGAAGATGG-------C 1268 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||||||| ||| |||| ||| || || ||||| || || Sbjct 1267 TTTCCGATTACAACATCCAGGAAGGGTCCACCCTGCACCTGGT 1225 >seq59 Length=3472997 Score = 104 bits (114), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 2114214 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTC 2114157 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || || ||||| || || || ||||| | Sbjct 2114156 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGACCAAC 2114097 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || ||||| || ||||| || ||||| || || | || || ||| Sbjct 2114096 AGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCCCACCCTGTCAGACTACAACA 2114037 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 2114036 TCCAGAAAGAGTCCACCTTGCACCTGGT 2114009 >seq370 Length=1552371 Score = 102 bits (112), Expect = 2e-16 Identities = 150/209 (72%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| | || || || || |||||| | ||||| | ||| || | Sbjct 217896 CAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCG--AGCCCAGTG 217953 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC-CCTCCGGACCAG 178040 ||||||| ||||| || || |||||| |||||||| || || ||| || || ||| || Sbjct 217954 ACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATCACCCCCTGACAAG 218013 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || | ||| || || || ||||| |||||||| | || || | || || ||| Sbjct 218014 CAGAGGCTGAACTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 218073 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || | || ||||| || || Sbjct 218074 ATCCAGAAGGAGTGCACCCTGCACCTGGT 218102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202047769879488