Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1045 138 1e-27 seq59 122 8e-23 seq40 122 8e-23 seq130 116 3e-21 seq370 114 1e-20 seq97588 109 5e-19 seq306 100 3e-16 seq9 100 3e-16 seq762 89.7 5e-13 seq137 82.4 7e-11 >seq1045 Length=604390 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| |||||||| |||||||| | || || Sbjct 14588 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 14647 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || |||| | ||| ||||| | ||| | || |||||||||| | Sbjct 14648 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14707 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 14708 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14767 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 14768 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14796 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| |||||||| |||| ||| | || || Sbjct 14360 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14419 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | ||| | || |||||||||| | Sbjct 14420 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14479 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 14480 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14539 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 14540 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14568 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| |||||||| |||| ||| | || || Sbjct 13676 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13735 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | ||| | || |||||||||| | Sbjct 13736 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 13795 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || | ||| | | | ||||| | | ||| ||||||| || || ||||| Sbjct 13796 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 13855 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 13856 CCTGTCAGGGTCTTCACAAAGATCTGCAT 13884 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| |||||||| |||| ||| | || || Sbjct 13904 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13963 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | ||| | || |||||||||| | Sbjct 13964 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14023 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || | ||| | | | ||||| | | ||| ||||||| || || ||||| Sbjct 14024 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14083 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 14084 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14112 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| |||||||| |||| ||| | || || Sbjct 14132 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14191 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | ||| | || |||||||||| | Sbjct 14192 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14251 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || | ||| | | | ||||| | | ||| ||||||| || || ||||| Sbjct 14252 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14311 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 14312 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14340 >seq59 Length=3472997 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | |||||| |||| ||| ||| ||||| ||||| ||||| || Sbjct 2113990 GCCACCACGAAGGTGAAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGA 2114049 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| | | || || |||||||||||||| |||||||| | ||||||||| | || Sbjct 2114050 CAGGGTGGGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGTCTCTGTTGGTCAGGTGG 2114109 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||| || ||| || ||| | | | |||| || | ||| || Sbjct 2114110 AATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTGTGACTGGGCTCGAC 2114169 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 ||| | || || || || |||||||| ||||| || || |||||||||||| Sbjct 2114170 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTA 2114221 >seq40 Length=4171579 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| || || || || ||||| | || || Sbjct 2180044 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179985 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || ||||| ||||| | ||| | || |||||| ||| | Sbjct 2179984 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 2179925 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | |||||||| | || || || || Sbjct 2179924 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTG 2179865 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||||||||||||| Sbjct 2179864 CCGGTCAGGGTCTTCACGAAAATCTGCATG 2179835 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| || || || || ||||| | || || Sbjct 2179816 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179757 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || ||||| ||||| | ||| | || ||| || ||| | Sbjct 2179756 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 2179697 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || ||| || || | ||||| || | ||||||||| | || || || | Sbjct 2179696 ATCTTGGCCTTGACATTTTCG--ATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCT 2179639 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || ||||| ||||| ||||| || ||||| || Sbjct 2179638 TGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 2179605 >seq130 Length=2658597 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| |||| ||| ||| ||||| ||||| || || || ||||||| | || || Sbjct 942300 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCCTC 942241 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||||| |||||||| | ||| ||||| | |||| || ||||| || Sbjct 942240 CAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCTTG 942181 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||| | | | ||||| || | ||| ||||| | || || || || Sbjct 942180 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 942121 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 |||||||| ||||| || || |||||||||||| Sbjct 942120 GCCCGTCAGGGTCTTCACAAAGATCTGCATGTTA 942087 >seq370 Length=1552371 Score = 114 bits (126), Expect = 1e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| |||| ||||||||| ||||| ||||| || |||||||| | || || Sbjct 218102 ACCAGGTGCAGGGTGCACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 218043 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG-AACGCTCTCCTTGTCCAT 41772 ||||||||||| || || |||| | ||| | ||| | ||| | || |||||||||| Sbjct 218042 AGCTGCTTGCCAGCAAAGTTCAGCCTCTGCTTGTCAGGGGGTGATGCCCTCCTTGTCCTG 217983 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| ||| ||| | | | ||||| || | ||| ||||| | || || || || Sbjct 217982 GATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCGACCTCTAAGGTGATGGTCTT 217923 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || | || || ||||| |||||||| Sbjct 217922 ACCAGTTAAGGTTTTCACGAAGATCTGCAT 217893 >seq97588 Length=222 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| || || || || ||||| | || || Sbjct 20 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 79 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || ||||| ||||| | ||| | || |||||| ||| | Sbjct 80 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 139 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | |||||||| | || || || || Sbjct 140 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTG 199 Query 41834 CCCGTCAGCGTCTTTACGAAAAT 41856 || ||||| ||||| |||||||| Sbjct 200 CCGGTCAGGGTCTTCACGAAAAT 222 >seq306 Length=1726031 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| |||| ||| ||| || | ||||| ||||| || |||||||| Sbjct 299821 AGGCGAAGCACCAGGTGCAAGGTGGACTCATTTTATATGTTGTAGTCTGACAGGGTGCGT 299762 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| |||||||| | ||| |||| | |||| || ||| Sbjct 299761 CCATCCTCCAGCTGCTTACCGGCAAATATCAGTCTCTGCTGGTTAGGTGGAATGCCTTCC 299702 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || || ||| || ||| | | | |||||| || | ||| ||||| | || Sbjct 299701 TTATCTTGGATCTTGGTCTTGACATTCTCGATAGTGTCACTGGGCTCTACCTCAAAAGTG 299642 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 || || || || ||||| || || || || ||||||||||| || Sbjct 299641 ATGGTCTTGCCTGTCAGGGTTTTCACAAAGCTCTGCATGTTAGCG 299597 >seq9 Length=5865362 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| |||| ||| ||| ||||| ||||| ||||| || ||| || | Sbjct 1315830 AGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGATGTGG 1315889 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| |||||||| | ||| ||||| | |||| || ||| Sbjct 1315890 CCATCCTCCAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTCC 1315949 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || || ||| || ||| | | ||| | || | ||| ||||| | || Sbjct 1315950 TTATCTTGGATCTTGGCCTTGGCATTCTTGATGGTGCCACTGGGCTCGACCTCAAGAGTG 1316009 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 || || || ||||||| ||||| || || |||||||||||| || Sbjct 1316010 ATGGTCTTTCCCGTCATGGTCTTCACAAAGATCTGCATGTTAGCG 1316054 >seq762 Length=850339 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| |||| ||| ||| |||| ||| | ||||| || ||||||| || || Sbjct 760312 CACCAGGTGCAAGGTGGACTCTTTCTAGATGGTGTAGTCTGACAGGGTGCAACGATCCTC 760371 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || |||||||| | ||| ||||| | ||| || ||||| || Sbjct 760372 CAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTAGAATGCCTTCCTTATCTTG 760431 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||||| | | |||| || | ||| ||||| | || || || || Sbjct 760432 GATCTTGGCCTTCACATTCTCAATGGTGTAACTGGGCTCAACCTCAAGAGTGATGGTCTT 760491 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 || ||||| ||||| || || |||| ||||||| Sbjct 760492 GCCTGTCAGGGTCTTCACAAAGATCTACATGTTA 760525 >seq137 Length=2563300 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||| || |||||||| | || || |||||||||||||| |||||| Sbjct 821681 TTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAATATC 821740 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGC 41759 || | ||||||||| | |||| || Sbjct 821741 AGTCTCTGTTGGTCAGGTGGAATGC 821765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461673232422400