Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000001.1 Length=33034 Score E Sequences producing significant alignments: (Bits) Value seq4931 581 7e-162 >seq4931 Length=27746 Score = 581 bits (644), Expect = 7e-162 Identities = 1346/1996 (67%), Gaps = 63/1996 (3%) Strand=Plus/Plus Query 17390 CAAGCTCCAGACACACACTTAGTATATAAAGTTGCGGCCGATAAAGTAGGAAAAACAGC- 17448 ||||||||||| || |||||||| || |||| | ||| | | |||||| | Sbjct 16064 CAAGCTCCAGATACTCACTTAGTGTACAAAGCATCTCCCGG----GCATGAAAAAGACTC 16119 Query 17449 ---TGCTCTAGGCCAGCAGGCGGCCCCTAACCGCCCAAACTATATTGCATTTAGAGATAA 17505 ||| || | ||||| || || ||| | ||||| ||||| | ||||| ||||| Sbjct 16120 TCTTGCCCTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAA 16179 Query 17506 CTTTATAGGCTTGATGTACTATAATAGCAATGGAAACTTAGGAGTGCTTGCAGGTCAAGC 17565 |||||| || || |||| ||||| || ||| | || || || || | || |||||| | Sbjct 16180 CTTTATCGGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATC 16239 Query 17566 TTCTCAACTTAATGCTGTTGTAGATCTTCAAGACAGAAACACAGAGCTTTCGTATCAGCT 17625 || || ||||||||||| | || |||||||||||||| ||||| | || |||||||| Sbjct 16240 GTCACAGCTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCT 16299 Query 17626 AATGTTAGATAGCTTGCATGATAGATCTAGATATTTTAGTATGTGGAATCAGGCTATAGA 17685 |||||||||| || || |||||| || |||||| || |||||||||| || | || Sbjct 16300 TATGTTAGATAATTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGA 16359 Query 17686 TAGCTATGACACAGATGTAAGAATCATGGAAAACCATGGCGTTGAAGATGAAATGCCAAA 17745 | ||||| |||| || ||||||| || || ||| || ||||| ||| | ||||| Sbjct 16360 TTCATATGATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAA 16419 Query 17746 CTACTGTTTTCCTGTGAGCGGTATTCAGACACTTAGTAAAGCAACAAAAGTaaa---aaa 17802 || || ||||| || | | | || | | || | | || || || ||| Sbjct 16420 TTATTGCTTTCC-GTTATCTGGATGTT--CTCCTATTGATTATACTGCTGTTAATCAAAA 16476 Query 17803 aGGTGTTGCAAATTGGGAAACAGATACAGACGCCAATGGTGTAAATTATATTACTCTA-G 17861 || |||| | |||| ||| || | | | | || | || | | | Sbjct 16477 TGGACAAGCAA--TCAATAACA-ATA---ACCCT----GCGCAGGTTCTTATAGGCAAAG 16526 Query 17862 GAAACTTAAATTGTATGGAAATTAATTTAAGTGCGAACTTATGGAAAGGCTTTTTGTACT 17921 |||| | | || |||||||| || || || ||| | ||||| ||| |||| | Sbjct 16527 GAAATGTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATT 16586 Query 17922 CAAATATTGCTCTGTATTTGCCCGATGAGTTTAAGTTTACACCAGAAAACGTAGACCTTC 17981 | ||||| || |||||| |||||||| | ||||| || || | ||| || | | | Sbjct 16587 CTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGC 16646 Query 17982 CAGAAAATAAGAATACCTACGCTTATATGAATGGCCGATTGCCAGCTGGCGGGCTAATTG 18041 | | || || || ||||| |||||| || | ||||| || || || | | Sbjct 16647 CGCAGGATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAG 16706 Query 18042 ACACTTACGTTAATATTGGAGCGAGATGGTCTCCTGACGTTAATGGACGTTGTAAACCCA 18101 | ||| | || || ||| | || ||||| || || | ||||| || || ||| Sbjct 16707 AGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGA-TGGACACGGTTAATCCA 16765 Query 18102 TTTA-TCACCACCGCAACGCTGGGCTGCGCTATAGATCTCAACTCTTAGGAAATGGCAGA 18160 |||| ||| ||| | || |||| || | || || ||||| || ||||||||||| | Sbjct 16766 TTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGC 16825 Query 18161 TACTGTCAGTTTCACATTCAAGTGCCGCAAAAGTTCTTTGCCCTTAAAAACTTGCTGCTA 18220 || | ||||| ||||| || ||||||||||| ||||| ||||||| ||||| || Sbjct 16826 TATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTG 16885 Query 18221 TTGCCAGGTACTTACACCTATGAGTGGTCTTTTAGAAAAGACGTAAACATGATTTTGCAA 18280 | || || | |||| || || ||||||||||||||||| ||||||||||||||||| Sbjct 16886 CTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAG 16945 Query 18281 AGCACTTTAGGTAATGACTTGCGGGTTGATGGAGCG--AGTATTAAAATTGACAGTGTTA 18338 || ||| | || ||||| || ||| || |||||| |||| | | ||||||| ||| Sbjct 16946 AGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTA--ACATTTGACAGCATTA 17003 Query 18339 ATTTGTATGCAAGCTTTTTCCCAATGGCCCATAATACTGCTTCTACACTAGAAGCTATGT 18398 | | ||| | || || || ||| | ||||| ||||||||||| || ||| ||||| Sbjct 17004 GCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGC 17063 Query 18399 TAAGAAATGATACAAATGACCAGTCCTTTATTGAATATCTATCTTCAGC--CAACATGCT 18456 | | ||||| || || |||||||| || ||||| || |||| |||||||| Sbjct 17064 TTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTTAACATGCT 17121 Query 18457 GTACCCAATTCCAGCTAAAGCCACTAATATCCCAATTACCATTCCATCTAGGAACTGGGC 18516 || | ||||| | | || | | || || | |||||| | ||||| ||||| Sbjct 17122 TTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGC 17181 Query 18517 TGCGTTTAGAGGCTGGAGTTTTACGCGTCTTAAGCAAAAAGAAACTCCAGCACTAGGTTC 18576 || |||||||| ||| ||||| | || || ||| | ||||| ||| | | || || Sbjct 17182 GGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTC 17241 Query 18577 GCCTTTTGATCCTTACTTTACATATTCAGGCACTATTCCCTACTTAGATGGCACTTTTTA 18636 | ||||| || ||||||| || || ||| | || || || | |||| || ||||| Sbjct 17242 TGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA 17301 Query 18637 CTTAAGCCACACATTTAAGAGA-GTCTCTATTCAGTTTGACTCTTCTGTTCAGTGGCCAG 18695 ||| ||||| | | ||| | || | || |||||||| ||||| || ||||| | Sbjct 17302 TTTATCTCACAC-TATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTG 17360 Query 18696 GCAATGACAGATTGCTCACACCTAACGAGTTTGAAATTAAGCGAGCAGTAGACGGAGAAG 18755 | ||||||||| | | | |||||| || ||| | || || ||| || |||| |||| Sbjct 17361 GAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAG 17420 Query 18756 GATACAGCGTAGCTCAAAGCAATATGACTAAAGATTGGTTTTTAGTACAAATGTTGGCTA 18815 | || | | |||| |||| || ||||| ||||||| | | | |||||| | ||| Sbjct 17421 GCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTC 17480 Query 18816 ATTATAACATAGGATACCAAGGTTACCACCT-CCCAGATGGTTACAAAGATAGGACATAT 18874 | || || || ||||||||||||| ||||| |||| | | ||| |||||||| ||| Sbjct 17481 ACTACAATATCGGATACCAAGGTTTTCACCTACCCACA-GATTATAAAGATAGATTGTAT 17539 Query 18875 TCGTTCTTGAGGAACTTCCAGCCTATGTGCAGACAAATAGTTGAT----GCCACACGGTA 18930 || || || || || || | || ||||| |||||| | || ||| | | |||| | Sbjct 17540 TCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAA 17599 Query 18931 CAATGATTATAAAGAAGTCACTATTTCTAATCAGCACAATAATTCTGGCTTT-ACTGCTT 18989 || ||| || || || || ||||||| |||||||| || ||| | | Sbjct 17600 AAA----TATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCA 17655 Query 18990 TTGCTAACGCTTCCCTGCCTAGAGAAGGTCACCCTTACCCAGCTAATTGGCCTTATCCGC 19049 || || ||| || || |||| || ||||| || ||| ||||||| |||| Sbjct 17656 TTATGGACCCTT---TG-GGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGC 17711 Query 19050 TTATTGGAGAAAACGTGGCCCCGTGTGCC---ACACAGAAAAAGTTTTTGTGTGACAGGA 19106 | || |||||| | ||| || || |||| ||| ||||| |||||||| | Sbjct 17712 TCATCGGAGAACA---GGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAA 17768 Query 19107 CTCTGTGGCGCATCCCATTCTCTAGTAATTTTATGTCAATGGGCTCGTTCACGGACTTGG 19166 | |||||| | || || ||||| || |||||||| ||||| | | || || ||| Sbjct 17769 CACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGG 17828 Query 19167 GACAAAACTTGTTGTACGCTAACGCCGCTCATGCGCTAGATATGACTTTTGAAGTGGATG 19226 ||||||| ||| | || || || | |||||||| |||| ||||| | ||||| ||| Sbjct 17829 GACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATT 17888 Query 19227 CTATGGATGAACCTACATTGCTGTATG-TACTGTTTGAGGTATTTGATGTTGTGC-GCGT 19284 | ||||| ||||| || | || ||| | || ||||| |||||||| ||||| | || Sbjct 17889 CAATGGAGGAACCAACTTATCT-CATGATGCTATTTGAAGTATTTGA-CATGTGCAGAGT 17946 Query 19285 GCATCAACCAC-ACAGGGGGTCATTGAAACCGTGTACCTGAGAACTCCGTTCTCTGCTGG 19343 |||||| || | || || ||||| ||| | || || ||||| || || || || || Sbjct 17947 GCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGG 18006 Query 19344 CAACGCCACTACATAA 19359 |||||| | |||||| Sbjct 18007 TAACGCCGCAACATAA 18022 Score = 241 bits (266), Expect = 3e-59 Identities = 1313/2067 (64%), Gaps = 97/2067 (5%) Strand=Plus/Plus Query 4769 TTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAACTAAAAGCAT-CAGACT 4827 ||||| |||||||| || ||||| | ||| ||||| | | | | || | || | Sbjct 4901 TTTTAGAGCATACATCTTTGGAGCTAAAAACACAGACTTTGGGGCATATGCGGGCTGA-T 4959 Query 4828 TACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAATAGATGGGTTTTTTGGAT 4887 |||| ||| || ||||||||||| || |||||||| | || || | | || Sbjct 4960 TACAGCGTTCGCATCTTGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTCAT 5019 Query 4888 CAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATGAGCC 4947 |||| | || || | |||| |||| | || |||||| | |||||| || | Sbjct 5020 CAAAGATTAAATTATTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTC 5079 Query 4948 GGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATAGTTC 5007 ||||| ||| ||||| ||||| |||||||| || ||||| | ||||||| | ||| Sbjct 5080 TATGCCCTGTTTCTGTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTC 5139 Query 5008 TTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGACACAA 5067 | | | || ||| | ||||| | ||||||||||| ||||| || || | Sbjct 5140 TGCGGTCCCAAGGTCGTCCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGA 5199 Query 5068 ATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTTTCTA 5127 | | | |||||||| | |||||| || || || ||||| | ||| | ||| || |||| Sbjct 5200 AAGCGCGGGTCCAGGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTA 5259 Query 5128 TTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCTAAAA 5187 || || || | ||||||| | || | ||||| || | ||| |||| || || | Sbjct 5260 TTTGTGGGGAAGTATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGA 5319 Query 5188 ACGTGATTGGCTTATACTTATATGTCACGTGA-CTAT------CTTTGGGTATAAAAAG- 5239 | |||||||||||| ||||||||||||||||| || | |||| |||||| | Sbjct 5320 AAGTGATTGGCTTAAACTTATATGTCACGTGATCTGTGTCAGAATTTGCATATAAAGTGT 5379 Query 5240 -----------GGTGTGCTCTTCGTT-----TTCATCACTTTCATC-TAACTCGGCA--- 5279 || | | || ||| ||| || ||||| | | ||| | Sbjct 5380 CTATGGCGGGAGGGGCCTTTTTAGTTGGCGGTTCCGCA---TCATCGGAGCGCGGTACGT 5436 Query 5280 ------GAA--GGTGCAGGTGGGTAAGTAACGACAAATTCTGGCATAATTTCAGCACTAA 5331 ||| | || |||| |||| || |||||||| |||| || || | Sbjct 5437 CATCGCGAAGCGAAGCCGGTGAGTAACAGGCGGTGAATTCTGGGATAACACGGGCGCTTA 5496 Query 5332 AGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAG--TTACCTCTGGCGATGGT 5389 || || || |||||| | | | | | | ||||| ||||| ||||| || || Sbjct 5497 GATTATCTGTCTCTATGTAACAGGTGGCGCT--TACAAAAGCTTTACCACTGGCTAT-GT 5553 Query 5390 TTTTGACGCGCTGGCTTCT-AGTTGGTCTGAAAACACAAtttttttGTTGTCCAATTTAG 5448 ||| | | | ||| | | ||| || | ||||| |||||||| || || || | | Sbjct 5554 CTTTCATGATGTCACTTGTAATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGG 5613 Query 5449 TGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGT 5508 |||||||| || || | ||||| || | || ||||| ||||||||| || || Sbjct 5614 TGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGT 5673 Query 5509 TCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGC-ACGTATTCTTTGGCC 5567 | | | ||| || || ||||| || | || |||| || ||||||||| | ||| Sbjct 5674 TGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTAT-ATTAGTGGCTACGTATTCTCTTGCC 5732 Query 5568 ACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCAT 5627 ||||| ||||||| || | || || || ||||| | | | | |||| Sbjct 5733 ACGCAATTCCACTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCAT 5792 Query 5628 CCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCG 5687 |||| || ||||||||||| || || || || |||||| |||| ||| || Sbjct 5793 CCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCA 5852 Query 5688 TTAGCCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAAC 5747 || | |||||| || | ||||||||||| || ||||| || || | |||| | | Sbjct 5853 TTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTAT 5912 Query 5748 AACTCGTCTGGAGGATCCGCGTCGATGGTGAAAAT-GCCTGGAAGAAGACACTCGTCAAA 5806 ||| | || | || || || || | ||| ||| | || | | || |||||| Sbjct 5913 TCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCA-GGGTCAAA 5971 Query 5807 ATAGTCAATTTTTTGCTCTAAGTTTTCAAGCTTTCTGATCCATTCTG-TCG-CAGCTAAG 5864 |||| |||||| | | | ||| |||| || ||| || ||| | | ||| ||| Sbjct 5972 ATAGGAAATTTTGT-CAC-CGGTTGCAAAGCGTTTTGA---ATACTGATAGAGAGCCAAG 6026 Query 5865 GCTCTTTCATACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCA 5924 ||| ||| | ||||| | || | || ||| | |||||||||| || |||||| Sbjct 6027 TTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCA 6086 Query 5925 TACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATAAGTGGGA 5984 ||||| ||| | || ||||| |||||||| || | || | | || || |||||||| Sbjct 6087 TACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGG 6146 Query 5985 TAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGCT 6044 ||||| || || || | |||||| | | || | ||||| || || || || || || Sbjct 6147 TAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCC 6206 Query 6045 AATAAAACGTTGTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTGT-----ATAATATTT 6099 | || || || | || | | ||| ||||||| | || | | | || Sbjct 6207 A--GAAGAGTATTCGACAAATGATGTTTTT---CTAACTTTTGAGTCTTAAACACCAGTT 6261 Query 6100 GCTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAA---TG 6156 |||||||||||||| ||| || |||||||| || || | ||||||| ||||| Sbjct 6262 GCTTAAAAATTGCAAAAGAATTTGAGCTAATTGTTGGACGCTGAAAAACATTAAAATTAC 6321 Query 6157 AAGC-ATC--AGGTAAGTTCACTTGAGAAGCAATAAAGTTTTTGTAAGATTCTTGGAGTT 6213 |||| ||| | | ||| | ||| ||||||||| || || || | || Sbjct 6322 AAGCTATCATATGCAAGCTTTTTTG------TATAAAGTTTAAATATGAATCATACAGAC 6375 Query 6214 TGTTTACTAGGGCCGATGTCACTAACACGTCTTGCACACAATAGTGC---AGCGTTTGCT 6270 | ||||| || || || | || ||||| |||||||| ||| | | ||| | Sbjct 6376 AATGTACTAATTGTGAAGTAACAATAACATCTTGAACACAATA-TGCCAAAACATTT--T 6432 Query 6271 GGATTATGTCGTAAGCCCCCACGtttttttCTCTCCACAGAGCCTTGTTGAGTTGATACT 6330 || ||||| ||| | | | | |||||||| | || || | |||| Sbjct 6433 TTATAATGTCATAATTTTTGATTTGTGAACTTTTCCACAGATCTTTATTAAAAGTGTACT 6492 Query 6331 CTTCGCTGGATTTCCAGTATCTTAGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACC 6390 |||| ||| | ||| || | | |||||| || || | |||| |||| || | Sbjct 6493 CTTCTTCGGAATCCCAATAAGCGACGTCTGGAAATCCGTCTTGATCTACCAGGTAGGATC 6552 Query 6391 CTATTCTATAGAATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCT 6450 || | || | |||||||||| |||| ||| || || || ||| | | | Sbjct 6553 CTTTCATAAAAAATTCATTTATGGCTTTGTAAGGGCAATAACCCTTTGTAGCTTTTAAAT 6612 Query 6451 CGTAAGCCCCAGCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCA 6510 || || | || || |||||||| || |||||||| | || || || | |||| Sbjct 6613 TATAGGCTTCGGCCGCCTTTCTTAAACTGGTGTGGGTTAATTGGAATGTATCACGGACCA 6672 Query 6511 TAAATTTAACAAACTGGTACTTGTGGTCTGCGGCTGTGAGCTTTCCACAC-TCCCAATCG 6569 ||||||| ||||| || | | ||| | || || | || | | | | | |||| | Sbjct 6673 TAAATTTTACAAATTGATGTTGCATGTCGGATGCGGTTA-CTATGCCCTCTTGCCAAGCA 6731 Query 6570 GCGAAATCTTTTCGTTTTTCGTACTTTGGATTAGGTAAGCAAAAAGAAATGTCATTGAAC 6629 || |||| | |||||| |||||||||||||||| | | || ||||| || Sbjct 6732 GCAAAATTTGGCTTTTTTTCAAACTTTGGATTAGGTAAAGCTATGGTTATATCATTAAAT 6791 Query 6630 AGTATTTTACCGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAGCAG----GCAGAAC 6685 | |||||||||||||| || | |||| ||| | | | ||| ||| |||| | Sbjct 6792 AAAATTTTACCGTTTCTGGGTA-AAAAATTCCGTCTCACTAAAAAACAGTCGTCCAGATC 6850 Query 6686 ATCCGTTCTGTTGTGTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTT 6745 || | | ||| || || || ||||| | |||||| |||||||| ||| ||||| Sbjct 6851 AT---TGTTAGTGTTTAATACCTGAGCGGCAAGCACGATTTCATCAAATCCGTTTATGTT 6907 Query 6746 GTGGCCAATTACATAAATTTCAATAAA 6772 ||| ||||| ||||| ||||| ||||| Sbjct 6908 GTGTCCAATCACATATATTTC-ATAAA 6933 Score = 152 bits (168), Expect = 1e-32 Identities = 269/381 (71%), Gaps = 16/381 (4%) Strand=Plus/Plus Query 3493 GTGTTATATACAATCCAGTCATAC--TGAGAGTGAGTCTTGTGGTAGTTAAAAATATCTT 3550 ||| | || || ||||| ||||| |||| || || || |||| ||| ||||||| Sbjct 3628 GTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATG--GTAGGCAAAGATATCTT 3685 Query 3551 TTAAGAGTAAAGAGATAGGTAAAGGAAGGCCTTTGGTATAAGAGTTAATAAACCTGTTAA 3610 |||| | || | ||| | ||| || |||||||| ||||||| |||||||| ||||| | Sbjct 3686 TTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTA 3745 Query 3611 GCTGAGATGGCTGCATTTTTGGAGAAATAATGTGCAGCTTAGCTTGAATTTTAAGGTTGC 3670 |||||| || |||||||| || | || || |||||||||||||| || || Sbjct 3746 GCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGG 3805 Query 3671 TAATGTTACCTGCGTGGTCTTTTCTGGGATTCATATTATGTAATACAACTAAAACAGCAT 3730 || || || ||||||| || ||||||||||||||||| || |||||| || Sbjct 3806 ATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCAC--AAACAG-AT 3862 Query 3731 A--ACCTG-TGCATTTAGGGA-ATCTGTCGTGAAGTTTAGATGGAAATGCATGAAAAAAC 3786 | ||| | |||| ||||| || | || ||||| || ||||| || |||||||| Sbjct 3863 AGTACCCGCTGCA-CGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAAT 3921 Query 3787 TTTGCAATTCCTTTGTGGTTTCCCATATCTTCCATACACTCATCTAGTATAATTGCAATT 3846 |||||||| ||| ||| | || ||||||||||||||| | ||||| || || Sbjct 3922 TTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATG 3981 Query 3847 GGGCC--TTTAGAAGCCGCCT 3865 || || ||| | ||||||| Sbjct 3982 GGTCCGGTTTTG--GCCGCCT 4000 Score = 127 bits (140), Expect = 4e-25 Identities = 709/1112 (64%), Gaps = 36/1112 (3%) Strand=Plus/Plus Query 12641 ATTAACTTTGACGACCGCTCAAGATGGGGCGCAAACTTTAAAACCATCCTTCACATGAAC 12700 || || || || || | || |||||||| | || || |||||||| || || ||| Sbjct 12229 ATAAAATTAGATGAAAGATCTAGATGGGGTGGTAATTTAAAAACCATTCTGCATTCAAAC 12288 Query 12701 ATGCCTAATATTAACGAGTTCATGTATAGTAACTCTTTTAGAGTGAAACTAATGGTAGAG 12760 || || ||||| | ||||| ||||| |||||| ||||||||||| || || | Sbjct 12289 ATACCAAATATAACCGAGTACATGTTTAGTAATTCTTTTAGAGTTAAGATACCCACTCAA 12348 Query 12761 AAAAAAGACGGAAAAGCCACCTACGACTGGGTGACTCTAACAATACCTGAAGGCAACTAC 12820 ||| ||||| | | || || |||||||||||||| ||||| ||||| || | Sbjct 12349 AAAGTTGACGGGCATTTAAGATATGAATGGGTGACTCTAACCATACCCGAAGGAAATTTT 12408 Query 12821 TCTGACATCGCCGCCATTGATATGATGAACAATGCTATTGTTGAAAACTACTTAGAAGTT 12880 || || || | || ||| |||||||| |||| ||| | | || || | Sbjct 12409 TCGGAGATTATGGTTATAGATTTGATGAACGATGCCATTATCTCTCATTATTTGTCTAAT 12468 Query 12881 GGGCGAAACAATGGTGTAGCAGAAGACGAAATTGGGGTTAAGTTTGACACACGGAACTTT 12940 || | ||||| ||||| ||||| || |||||| | ||||| | || ||| Sbjct 12469 GGCAGGTTACGCGGTGTTAATGAAGATGAAATAGGTGTTAAGCTGGACACTAGAAATTTT 12528 Query 12941 AGGCTGGGCTACGA-CCCTGTGACTGGCTTAGTTATGCCTGGAAAGTACATTAACATG-- 12997 | |||| || || |||| | | | ||| | ||||| || | ||| | | ||| Sbjct 12529 AAAATGGGTTATGATCCCTATTATAAG-TTAATCATGCCCGGCATGTATCT--ATATGAA 12585 Query 12998 GCCGTCCACCCAGATATTATTTTGGCTCCTGGCTGCGCCGTAGACTTTACTACGAGCCGC 13057 || | || || || | || || ||| ||| || | || |||| | || | Sbjct 12586 GCATTTCATCCCGACGTGATCTTAAGTCCACACTGTGCTATTGATTTTAGCAAAAGTAGA 12645 Query 13058 TTAAACAACTTGCTTGGCATTCGGAAAAGGCTTCCATTCCAAGAGGGATTTCAG-ATCAC 13116 ||||| || | | || || | ||||| | |||| || || |||||| | ||||| Sbjct 12646 TTAAATAATCTATTGGGTATAAGAAAAAGATTACCATATCA-GAAGGATTTTATTATCAC 12704 Query 13117 TTATGAAGATTTAGTTGGGGGAAACATTCCTGCGCTGCTAGATGTACA-GAATTATGACG 13175 |||||| |||||||| |||||||| ||||| || || |||| || | | ||| || Sbjct 12705 TTATGATGATTTAGTAGGGGGAAATATTCCCGCTCTATTAGACTTAGAAGCATT-TGCTC 12763 Query 13176 AAAATGACCCCAC-CACTATTCGTCCAATAACTGAAGATCCATCAAGGCGGTCT-TACCA 13233 ||||| || ||| | | || | ||||| || || | | | || || Sbjct 12764 AAAATAACATGGTTCACAAACC--CCTTT---TGAAGGACCCCCATGACAGAGACTATCA 12818 Query 13234 TGTAGGTGAAGACCCCACTGTGAGAGACACGTTT---ACATACTATAGAAGCTGGTATTT 13290 ||| |||| || |||| | ||| ||||| || || || ||||| |||||||| Sbjct 12819 TGTCGGTGGTGATCCCAAAGC---AGATGCGTTTGACACGTATTACAGAAGTTGGTATTT 12875 Query 13291 AGCTTACAATTACGGGGACCCCTTAAAAGG--AATTCGCAATGCCACGCTGCTAGTGACC 13348 ||| || |||||||| | || | || || || || || || || ||| Sbjct 12876 AGCATATAATTACGGTC-CTCCAGATGGGGTTAAATCTAAA----ACACTTTTAACAACC 12930 Query 13349 CCTGACGTAACTTGCGGCATGGAGCAAGTATACTGGAGCATCCCAGATATGTATGTGGAG 13408 || || || || || || || ||| ||||||||||| | |||||||| | || Sbjct 12931 CCAGATGTCACATGTGGTCCCGAACAAATATACTGGAGCCTTCCAGATATAGTTCAAGAA 12990 Query 13409 CCAGTGACGTTTAAGGCTAGTCAAAACGTGTCTAACTAT--CCAGTGATAGGTGTAGAGT 13466 || || | ||||| ||| || || ||| | || || | || ||||| | Sbjct 12991 CCTGTATCCTTTAAACCTACCTTTAAGTTGG--AACAAATGCCTGTTGTGGGAGTAGAAT 13048 Query 13467 TAATGCCTC-AGCGGCCTCGTAGTTTTTACAATGCTCAAGCGGTGTATTCTCAAATGATT 13525 | |||| | | ||| | ||| || || || || || |||||||| || ||| | Sbjct 13049 TGTTGCCGCTAAAAGCCAGGGCGTTCTTT-AACGCCCAGGCTGTGTATTCGCAGATGTTA 13107 Query 13526 CAAGAAAACACTAATCAGACAATGGTCTTTAACCGCTTTCCTGACAACCAGATTTTCTTG 13585 || ||| || ||| ||||| || | |||||||| || || || || | Sbjct 13108 GCGGATTCAACTTCGCAAACACATGTCTTCAATAGATTTCCTGATAATCAAATCTTAATC 13167 Query 13586 CGGCCGCCAGAGTCTACTATCACCAGCATCAGTGAAAACGTGCCAACGCAGACAGACCAC 13645 || || |||| | || || | |||||| |||||||||||| | ||| || ||| Sbjct 13168 CGTCCACCAGCTCCCACAATTTGCTCCATCAGCGAAAACGTGCCATCTTTGACGGATCAC 13227 Query 13646 GGAACGCTTCCTATTAGAAACAGTGTTTCTGGTGTTCAGCGCGTCACGTTAACAGACGCG 13705 ||||| || || | | || || || |||| | ||||| || | ||||||||||| Sbjct 13228 GGAACAATTTCTTTAAAGAATAGCATTACTGGGATACAGCGTGTAATTTTAACAGACGCC 13287 Query 13706 AGACGTAGAGCGAGTCCTTACGTGTATAAAAG 13737 ||| | ||| || ||| ||||| |||||||| Sbjct 13288 AGAAGAAGAACGGTTCCATACGTATATAAAAG 13319 Score = 122 bits (134), Expect = 2e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 23879 CTGAGAGCTAAGATTTTTCCTACCTTGTATGCTATATTTCAGCAAAGCAGAGGCCAGAAA 23938 || ||| |||||| ||||| || ||||||||||| ||||| ||| || | || | ||| Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208 Query 23939 ACTAACCTTAAAATAAAAAACCGCACGCTAAGATCTCTAACAAAAAGCTGTCTTTACCAC 23998 | | | |||||| ||||| ||||| ||||||| || || || ||||||||||| ||| Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268 Query 23999 AAGCAAGAGAGTCAGCTGCAAAGAACTCTTGAAGACGCCGAAGCTCTGCTTCAAAAGTAC 24058 || | || |||||||| || ||||| |||||||| || || || || | |||| | Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGC 22328 Query 24059 TG 24060 || Sbjct 22329 TG 22330 Score = 107 bits (118), Expect = 4e-19 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 7110 CCATGCCATGTGTAAGTTTCAACGTCATAAGTTaaaaaaaaTCTTTTAGTGTCATCGCAA 7169 |||||||| || |||||||||| ||||||||| | | | | | || || | | Sbjct 7278 CCATGCCAGGTATAAGTTTCAATGTCATAAGTGATATAGACACGTTGTGTATGACTTACG 7337 Query 7170 GAGCCAATGGGCTGAAAAGAAATCTGCGACCACCACTCAGAAGATTTAAAATTGATGTGA 7229 ||||||||||| |||||| || | |||||| ||| | | | | |||| | || Sbjct 7338 GAGCCAATGGGAAAAAAAGATATTTTTTTCCACCAGTCACATGTTGAAGAATTTACATGG 7397 Query 7230 TGAAAGTAAAAGTCTCGTCGTCGGACGGAGCATGTGTGCGAGTTGGCAAAAAAGTCTCCA 7289 ||||| ||||| |||| || || ||| || |||| |||| ||| |||||| ||| Sbjct 7398 TGAAAATAAAAATCTCTTCTTCTGACTGAACATGAATGCGTGTTTTTAAAAAAACTACCA 7457 Query 7290 CAAAATTCACATTTTTGCGATGAT-TGAAAAGATTTTATTAAAAACACTTTGTTTTGCTT 7348 |||||||||||||| | || | | || ||||| ||||||||||| | ||| | || Sbjct 7458 CAAAATTCACATTTAT-TAATACTGTCAATTGATTTAATTAAAAACACCTGGTTGTCTTT 7516 Query 7349 AATTAAAA 7356 ||| |||| Sbjct 7517 AATCAAAA 7524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105505457887336