Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000001.1
Length=33034
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 581 7e-162
>seq4931
Length=27746
Score = 581 bits (644), Expect = 7e-162
Identities = 1346/1996 (67%), Gaps = 63/1996 (3%)
Strand=Plus/Plus
Query 17390 CAAGCTCCAGACACACACTTAGTATATAAAGTTGCGGCCGATAAAGTAGGAAAAACAGC- 17448
||||||||||| || |||||||| || |||| | ||| | | |||||| |
Sbjct 16064 CAAGCTCCAGATACTCACTTAGTGTACAAAGCATCTCCCGG----GCATGAAAAAGACTC 16119
Query 17449 ---TGCTCTAGGCCAGCAGGCGGCCCCTAACCGCCCAAACTATATTGCATTTAGAGATAA 17505
||| || | ||||| || || ||| | ||||| ||||| | ||||| |||||
Sbjct 16120 TCTTGCCCTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAA 16179
Query 17506 CTTTATAGGCTTGATGTACTATAATAGCAATGGAAACTTAGGAGTGCTTGCAGGTCAAGC 17565
|||||| || || |||| ||||| || ||| | || || || || | || |||||| |
Sbjct 16180 CTTTATCGGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATC 16239
Query 17566 TTCTCAACTTAATGCTGTTGTAGATCTTCAAGACAGAAACACAGAGCTTTCGTATCAGCT 17625
|| || ||||||||||| | || |||||||||||||| ||||| | || ||||||||
Sbjct 16240 GTCACAGCTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCT 16299
Query 17626 AATGTTAGATAGCTTGCATGATAGATCTAGATATTTTAGTATGTGGAATCAGGCTATAGA 17685
|||||||||| || || |||||| || |||||| || |||||||||| || | ||
Sbjct 16300 TATGTTAGATAATTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGA 16359
Query 17686 TAGCTATGACACAGATGTAAGAATCATGGAAAACCATGGCGTTGAAGATGAAATGCCAAA 17745
| ||||| |||| || ||||||| || || ||| || ||||| ||| | |||||
Sbjct 16360 TTCATATGATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAA 16419
Query 17746 CTACTGTTTTCCTGTGAGCGGTATTCAGACACTTAGTAAAGCAACAAAAGTaaa---aaa 17802
|| || ||||| || | | | || | | || | | || || || |||
Sbjct 16420 TTATTGCTTTCC-GTTATCTGGATGTT--CTCCTATTGATTATACTGCTGTTAATCAAAA 16476
Query 17803 aGGTGTTGCAAATTGGGAAACAGATACAGACGCCAATGGTGTAAATTATATTACTCTA-G 17861
|| |||| | |||| ||| || | | | | || | || | | |
Sbjct 16477 TGGACAAGCAA--TCAATAACA-ATA---ACCCT----GCGCAGGTTCTTATAGGCAAAG 16526
Query 17862 GAAACTTAAATTGTATGGAAATTAATTTAAGTGCGAACTTATGGAAAGGCTTTTTGTACT 17921
|||| | | || |||||||| || || || ||| | ||||| ||| |||| |
Sbjct 16527 GAAATGTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATT 16586
Query 17922 CAAATATTGCTCTGTATTTGCCCGATGAGTTTAAGTTTACACCAGAAAACGTAGACCTTC 17981
| ||||| || |||||| |||||||| | ||||| || || | ||| || | | |
Sbjct 16587 CTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGC 16646
Query 17982 CAGAAAATAAGAATACCTACGCTTATATGAATGGCCGATTGCCAGCTGGCGGGCTAATTG 18041
| | || || || ||||| |||||| || | ||||| || || || | |
Sbjct 16647 CGCAGGATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAG 16706
Query 18042 ACACTTACGTTAATATTGGAGCGAGATGGTCTCCTGACGTTAATGGACGTTGTAAACCCA 18101
| ||| | || || ||| | || ||||| || || | ||||| || || |||
Sbjct 16707 AGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGA-TGGACACGGTTAATCCA 16765
Query 18102 TTTA-TCACCACCGCAACGCTGGGCTGCGCTATAGATCTCAACTCTTAGGAAATGGCAGA 18160
|||| ||| ||| | || |||| || | || || ||||| || ||||||||||| |
Sbjct 16766 TTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGC 16825
Query 18161 TACTGTCAGTTTCACATTCAAGTGCCGCAAAAGTTCTTTGCCCTTAAAAACTTGCTGCTA 18220
|| | ||||| ||||| || ||||||||||| ||||| ||||||| ||||| ||
Sbjct 16826 TATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTG 16885
Query 18221 TTGCCAGGTACTTACACCTATGAGTGGTCTTTTAGAAAAGACGTAAACATGATTTTGCAA 18280
| || || | |||| || || ||||||||||||||||| |||||||||||||||||
Sbjct 16886 CTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAG 16945
Query 18281 AGCACTTTAGGTAATGACTTGCGGGTTGATGGAGCG--AGTATTAAAATTGACAGTGTTA 18338
|| ||| | || ||||| || ||| || |||||| |||| | | ||||||| |||
Sbjct 16946 AGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTA--ACATTTGACAGCATTA 17003
Query 18339 ATTTGTATGCAAGCTTTTTCCCAATGGCCCATAATACTGCTTCTACACTAGAAGCTATGT 18398
| | ||| | || || || ||| | ||||| ||||||||||| || ||| |||||
Sbjct 17004 GCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGC 17063
Query 18399 TAAGAAATGATACAAATGACCAGTCCTTTATTGAATATCTATCTTCAGC--CAACATGCT 18456
| | ||||| || || |||||||| || ||||| || |||| ||||||||
Sbjct 17064 TTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTTAACATGCT 17121
Query 18457 GTACCCAATTCCAGCTAAAGCCACTAATATCCCAATTACCATTCCATCTAGGAACTGGGC 18516
|| | ||||| | | || | | || || | |||||| | ||||| |||||
Sbjct 17122 TTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGC 17181
Query 18517 TGCGTTTAGAGGCTGGAGTTTTACGCGTCTTAAGCAAAAAGAAACTCCAGCACTAGGTTC 18576
|| |||||||| ||| ||||| | || || ||| | ||||| ||| | | || ||
Sbjct 17182 GGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTC 17241
Query 18577 GCCTTTTGATCCTTACTTTACATATTCAGGCACTATTCCCTACTTAGATGGCACTTTTTA 18636
| ||||| || ||||||| || || ||| | || || || | |||| || |||||
Sbjct 17242 TGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA 17301
Query 18637 CTTAAGCCACACATTTAAGAGA-GTCTCTATTCAGTTTGACTCTTCTGTTCAGTGGCCAG 18695
||| ||||| | | ||| | || | || |||||||| ||||| || ||||| |
Sbjct 17302 TTTATCTCACAC-TATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTG 17360
Query 18696 GCAATGACAGATTGCTCACACCTAACGAGTTTGAAATTAAGCGAGCAGTAGACGGAGAAG 18755
| ||||||||| | | | |||||| || ||| | || || ||| || |||| ||||
Sbjct 17361 GAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAG 17420
Query 18756 GATACAGCGTAGCTCAAAGCAATATGACTAAAGATTGGTTTTTAGTACAAATGTTGGCTA 18815
| || | | |||| |||| || ||||| ||||||| | | | |||||| | |||
Sbjct 17421 GCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTC 17480
Query 18816 ATTATAACATAGGATACCAAGGTTACCACCT-CCCAGATGGTTACAAAGATAGGACATAT 18874
| || || || ||||||||||||| ||||| |||| | | ||| |||||||| |||
Sbjct 17481 ACTACAATATCGGATACCAAGGTTTTCACCTACCCACA-GATTATAAAGATAGATTGTAT 17539
Query 18875 TCGTTCTTGAGGAACTTCCAGCCTATGTGCAGACAAATAGTTGAT----GCCACACGGTA 18930
|| || || || || || | || ||||| |||||| | || ||| | | |||| |
Sbjct 17540 TCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAA 17599
Query 18931 CAATGATTATAAAGAAGTCACTATTTCTAATCAGCACAATAATTCTGGCTTT-ACTGCTT 18989
|| ||| || || || || ||||||| |||||||| || ||| | |
Sbjct 17600 AAA----TATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCA 17655
Query 18990 TTGCTAACGCTTCCCTGCCTAGAGAAGGTCACCCTTACCCAGCTAATTGGCCTTATCCGC 19049
|| || ||| || || |||| || ||||| || ||| ||||||| ||||
Sbjct 17656 TTATGGACCCTT---TG-GGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGC 17711
Query 19050 TTATTGGAGAAAACGTGGCCCCGTGTGCC---ACACAGAAAAAGTTTTTGTGTGACAGGA 19106
| || |||||| | ||| || || |||| ||| ||||| |||||||| |
Sbjct 17712 TCATCGGAGAACA---GGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAA 17768
Query 19107 CTCTGTGGCGCATCCCATTCTCTAGTAATTTTATGTCAATGGGCTCGTTCACGGACTTGG 19166
| |||||| | || || ||||| || |||||||| ||||| | | || || |||
Sbjct 17769 CACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGG 17828
Query 19167 GACAAAACTTGTTGTACGCTAACGCCGCTCATGCGCTAGATATGACTTTTGAAGTGGATG 19226
||||||| ||| | || || || | |||||||| |||| ||||| | ||||| |||
Sbjct 17829 GACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATT 17888
Query 19227 CTATGGATGAACCTACATTGCTGTATG-TACTGTTTGAGGTATTTGATGTTGTGC-GCGT 19284
| ||||| ||||| || | || ||| | || ||||| |||||||| ||||| | ||
Sbjct 17889 CAATGGAGGAACCAACTTATCT-CATGATGCTATTTGAAGTATTTGA-CATGTGCAGAGT 17946
Query 19285 GCATCAACCAC-ACAGGGGGTCATTGAAACCGTGTACCTGAGAACTCCGTTCTCTGCTGG 19343
|||||| || | || || ||||| ||| | || || ||||| || || || || ||
Sbjct 17947 GCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGG 18006
Query 19344 CAACGCCACTACATAA 19359
|||||| | ||||||
Sbjct 18007 TAACGCCGCAACATAA 18022
Score = 241 bits (266), Expect = 3e-59
Identities = 1313/2067 (64%), Gaps = 97/2067 (5%)
Strand=Plus/Plus
Query 4769 TTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAACTAAAAGCAT-CAGACT 4827
||||| |||||||| || ||||| | ||| ||||| | | | | || | || |
Sbjct 4901 TTTTAGAGCATACATCTTTGGAGCTAAAAACACAGACTTTGGGGCATATGCGGGCTGA-T 4959
Query 4828 TACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAATAGATGGGTTTTTTGGAT 4887
|||| ||| || ||||||||||| || |||||||| | || || | | ||
Sbjct 4960 TACAGCGTTCGCATCTTGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTCAT 5019
Query 4888 CAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATGAGCC 4947
|||| | || || | |||| |||| | || |||||| | |||||| || |
Sbjct 5020 CAAAGATTAAATTATTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTC 5079
Query 4948 GGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATAGTTC 5007
||||| ||| ||||| ||||| |||||||| || ||||| | ||||||| | |||
Sbjct 5080 TATGCCCTGTTTCTGTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTC 5139
Query 5008 TTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGACACAA 5067
| | | || ||| | ||||| | ||||||||||| ||||| || || |
Sbjct 5140 TGCGGTCCCAAGGTCGTCCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGA 5199
Query 5068 ATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTTTCTA 5127
| | | |||||||| | |||||| || || || ||||| | ||| | ||| || ||||
Sbjct 5200 AAGCGCGGGTCCAGGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTA 5259
Query 5128 TTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCTAAAA 5187
|| || || | ||||||| | || | ||||| || | ||| |||| || || |
Sbjct 5260 TTTGTGGGGAAGTATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGA 5319
Query 5188 ACGTGATTGGCTTATACTTATATGTCACGTGA-CTAT------CTTTGGGTATAAAAAG- 5239
| |||||||||||| ||||||||||||||||| || | |||| |||||| |
Sbjct 5320 AAGTGATTGGCTTAAACTTATATGTCACGTGATCTGTGTCAGAATTTGCATATAAAGTGT 5379
Query 5240 -----------GGTGTGCTCTTCGTT-----TTCATCACTTTCATC-TAACTCGGCA--- 5279
|| | | || ||| ||| || ||||| | | ||| |
Sbjct 5380 CTATGGCGGGAGGGGCCTTTTTAGTTGGCGGTTCCGCA---TCATCGGAGCGCGGTACGT 5436
Query 5280 ------GAA--GGTGCAGGTGGGTAAGTAACGACAAATTCTGGCATAATTTCAGCACTAA 5331
||| | || |||| |||| || |||||||| |||| || || |
Sbjct 5437 CATCGCGAAGCGAAGCCGGTGAGTAACAGGCGGTGAATTCTGGGATAACACGGGCGCTTA 5496
Query 5332 AGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAG--TTACCTCTGGCGATGGT 5389
|| || || |||||| | | | | | | ||||| ||||| ||||| || ||
Sbjct 5497 GATTATCTGTCTCTATGTAACAGGTGGCGCT--TACAAAAGCTTTACCACTGGCTAT-GT 5553
Query 5390 TTTTGACGCGCTGGCTTCT-AGTTGGTCTGAAAACACAAtttttttGTTGTCCAATTTAG 5448
||| | | | ||| | | ||| || | ||||| |||||||| || || || | |
Sbjct 5554 CTTTCATGATGTCACTTGTAATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGG 5613
Query 5449 TGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGT 5508
|||||||| || || | ||||| || | || ||||| ||||||||| || ||
Sbjct 5614 TGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGT 5673
Query 5509 TCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGC-ACGTATTCTTTGGCC 5567
| | | ||| || || ||||| || | || |||| || ||||||||| | |||
Sbjct 5674 TGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTAT-ATTAGTGGCTACGTATTCTCTTGCC 5732
Query 5568 ACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCAT 5627
||||| ||||||| || | || || || ||||| | | | | ||||
Sbjct 5733 ACGCAATTCCACTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCAT 5792
Query 5628 CCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCG 5687
|||| || ||||||||||| || || || || |||||| |||| ||| ||
Sbjct 5793 CCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCA 5852
Query 5688 TTAGCCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAAC 5747
|| | |||||| || | ||||||||||| || ||||| || || | |||| | |
Sbjct 5853 TTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTAT 5912
Query 5748 AACTCGTCTGGAGGATCCGCGTCGATGGTGAAAAT-GCCTGGAAGAAGACACTCGTCAAA 5806
||| | || | || || || || | ||| ||| | || | | || ||||||
Sbjct 5913 TCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCA-GGGTCAAA 5971
Query 5807 ATAGTCAATTTTTTGCTCTAAGTTTTCAAGCTTTCTGATCCATTCTG-TCG-CAGCTAAG 5864
|||| |||||| | | | ||| |||| || ||| || ||| | | ||| |||
Sbjct 5972 ATAGGAAATTTTGT-CAC-CGGTTGCAAAGCGTTTTGA---ATACTGATAGAGAGCCAAG 6026
Query 5865 GCTCTTTCATACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCA 5924
||| ||| | ||||| | || | || ||| | |||||||||| || ||||||
Sbjct 6027 TTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCA 6086
Query 5925 TACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATAAGTGGGA 5984
||||| ||| | || ||||| |||||||| || | || | | || || ||||||||
Sbjct 6087 TACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGG 6146
Query 5985 TAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGCT 6044
||||| || || || | |||||| | | || | ||||| || || || || || ||
Sbjct 6147 TAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCC 6206
Query 6045 AATAAAACGTTGTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTGT-----ATAATATTT 6099
| || || || | || | | ||| ||||||| | || | | | ||
Sbjct 6207 A--GAAGAGTATTCGACAAATGATGTTTTT---CTAACTTTTGAGTCTTAAACACCAGTT 6261
Query 6100 GCTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAA---TG 6156
|||||||||||||| ||| || |||||||| || || | ||||||| |||||
Sbjct 6262 GCTTAAAAATTGCAAAAGAATTTGAGCTAATTGTTGGACGCTGAAAAACATTAAAATTAC 6321
Query 6157 AAGC-ATC--AGGTAAGTTCACTTGAGAAGCAATAAAGTTTTTGTAAGATTCTTGGAGTT 6213
|||| ||| | | ||| | ||| ||||||||| || || || | ||
Sbjct 6322 AAGCTATCATATGCAAGCTTTTTTG------TATAAAGTTTAAATATGAATCATACAGAC 6375
Query 6214 TGTTTACTAGGGCCGATGTCACTAACACGTCTTGCACACAATAGTGC---AGCGTTTGCT 6270
| ||||| || || || | || ||||| |||||||| ||| | | ||| |
Sbjct 6376 AATGTACTAATTGTGAAGTAACAATAACATCTTGAACACAATA-TGCCAAAACATTT--T 6432
Query 6271 GGATTATGTCGTAAGCCCCCACGtttttttCTCTCCACAGAGCCTTGTTGAGTTGATACT 6330
|| ||||| ||| | | | | |||||||| | || || | ||||
Sbjct 6433 TTATAATGTCATAATTTTTGATTTGTGAACTTTTCCACAGATCTTTATTAAAAGTGTACT 6492
Query 6331 CTTCGCTGGATTTCCAGTATCTTAGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACC 6390
|||| ||| | ||| || | | |||||| || || | |||| |||| || |
Sbjct 6493 CTTCTTCGGAATCCCAATAAGCGACGTCTGGAAATCCGTCTTGATCTACCAGGTAGGATC 6552
Query 6391 CTATTCTATAGAATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCT 6450
|| | || | |||||||||| |||| ||| || || || ||| | | |
Sbjct 6553 CTTTCATAAAAAATTCATTTATGGCTTTGTAAGGGCAATAACCCTTTGTAGCTTTTAAAT 6612
Query 6451 CGTAAGCCCCAGCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCA 6510
|| || | || || |||||||| || |||||||| | || || || | ||||
Sbjct 6613 TATAGGCTTCGGCCGCCTTTCTTAAACTGGTGTGGGTTAATTGGAATGTATCACGGACCA 6672
Query 6511 TAAATTTAACAAACTGGTACTTGTGGTCTGCGGCTGTGAGCTTTCCACAC-TCCCAATCG 6569
||||||| ||||| || | | ||| | || || | || | | | | | |||| |
Sbjct 6673 TAAATTTTACAAATTGATGTTGCATGTCGGATGCGGTTA-CTATGCCCTCTTGCCAAGCA 6731
Query 6570 GCGAAATCTTTTCGTTTTTCGTACTTTGGATTAGGTAAGCAAAAAGAAATGTCATTGAAC 6629
|| |||| | |||||| |||||||||||||||| | | || ||||| ||
Sbjct 6732 GCAAAATTTGGCTTTTTTTCAAACTTTGGATTAGGTAAAGCTATGGTTATATCATTAAAT 6791
Query 6630 AGTATTTTACCGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAGCAG----GCAGAAC 6685
| |||||||||||||| || | |||| ||| | | | ||| ||| |||| |
Sbjct 6792 AAAATTTTACCGTTTCTGGGTA-AAAAATTCCGTCTCACTAAAAAACAGTCGTCCAGATC 6850
Query 6686 ATCCGTTCTGTTGTGTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTT 6745
|| | | ||| || || || ||||| | |||||| |||||||| ||| |||||
Sbjct 6851 AT---TGTTAGTGTTTAATACCTGAGCGGCAAGCACGATTTCATCAAATCCGTTTATGTT 6907
Query 6746 GTGGCCAATTACATAAATTTCAATAAA 6772
||| ||||| ||||| ||||| |||||
Sbjct 6908 GTGTCCAATCACATATATTTC-ATAAA 6933
Score = 152 bits (168), Expect = 1e-32
Identities = 269/381 (71%), Gaps = 16/381 (4%)
Strand=Plus/Plus
Query 3493 GTGTTATATACAATCCAGTCATAC--TGAGAGTGAGTCTTGTGGTAGTTAAAAATATCTT 3550
||| | || || ||||| ||||| |||| || || || |||| ||| |||||||
Sbjct 3628 GTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATG--GTAGGCAAAGATATCTT 3685
Query 3551 TTAAGAGTAAAGAGATAGGTAAAGGAAGGCCTTTGGTATAAGAGTTAATAAACCTGTTAA 3610
|||| | || | ||| | ||| || |||||||| ||||||| |||||||| ||||| |
Sbjct 3686 TTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTA 3745
Query 3611 GCTGAGATGGCTGCATTTTTGGAGAAATAATGTGCAGCTTAGCTTGAATTTTAAGGTTGC 3670
|||||| || |||||||| || | || || |||||||||||||| || ||
Sbjct 3746 GCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGG 3805
Query 3671 TAATGTTACCTGCGTGGTCTTTTCTGGGATTCATATTATGTAATACAACTAAAACAGCAT 3730
|| || || ||||||| || ||||||||||||||||| || |||||| ||
Sbjct 3806 ATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCAC--AAACAG-AT 3862
Query 3731 A--ACCTG-TGCATTTAGGGA-ATCTGTCGTGAAGTTTAGATGGAAATGCATGAAAAAAC 3786
| ||| | |||| ||||| || | || ||||| || ||||| || ||||||||
Sbjct 3863 AGTACCCGCTGCA-CGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAAT 3921
Query 3787 TTTGCAATTCCTTTGTGGTTTCCCATATCTTCCATACACTCATCTAGTATAATTGCAATT 3846
|||||||| ||| ||| | || ||||||||||||||| | ||||| || ||
Sbjct 3922 TTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATG 3981
Query 3847 GGGCC--TTTAGAAGCCGCCT 3865
|| || ||| | |||||||
Sbjct 3982 GGTCCGGTTTTG--GCCGCCT 4000
Score = 127 bits (140), Expect = 4e-25
Identities = 709/1112 (64%), Gaps = 36/1112 (3%)
Strand=Plus/Plus
Query 12641 ATTAACTTTGACGACCGCTCAAGATGGGGCGCAAACTTTAAAACCATCCTTCACATGAAC 12700
|| || || || || | || |||||||| | || || |||||||| || || |||
Sbjct 12229 ATAAAATTAGATGAAAGATCTAGATGGGGTGGTAATTTAAAAACCATTCTGCATTCAAAC 12288
Query 12701 ATGCCTAATATTAACGAGTTCATGTATAGTAACTCTTTTAGAGTGAAACTAATGGTAGAG 12760
|| || ||||| | ||||| ||||| |||||| ||||||||||| || || |
Sbjct 12289 ATACCAAATATAACCGAGTACATGTTTAGTAATTCTTTTAGAGTTAAGATACCCACTCAA 12348
Query 12761 AAAAAAGACGGAAAAGCCACCTACGACTGGGTGACTCTAACAATACCTGAAGGCAACTAC 12820
||| ||||| | | || || |||||||||||||| ||||| ||||| || |
Sbjct 12349 AAAGTTGACGGGCATTTAAGATATGAATGGGTGACTCTAACCATACCCGAAGGAAATTTT 12408
Query 12821 TCTGACATCGCCGCCATTGATATGATGAACAATGCTATTGTTGAAAACTACTTAGAAGTT 12880
|| || || | || ||| |||||||| |||| ||| | | || || |
Sbjct 12409 TCGGAGATTATGGTTATAGATTTGATGAACGATGCCATTATCTCTCATTATTTGTCTAAT 12468
Query 12881 GGGCGAAACAATGGTGTAGCAGAAGACGAAATTGGGGTTAAGTTTGACACACGGAACTTT 12940
|| | ||||| ||||| ||||| || |||||| | ||||| | || |||
Sbjct 12469 GGCAGGTTACGCGGTGTTAATGAAGATGAAATAGGTGTTAAGCTGGACACTAGAAATTTT 12528
Query 12941 AGGCTGGGCTACGA-CCCTGTGACTGGCTTAGTTATGCCTGGAAAGTACATTAACATG-- 12997
| |||| || || |||| | | | ||| | ||||| || | ||| | | |||
Sbjct 12529 AAAATGGGTTATGATCCCTATTATAAG-TTAATCATGCCCGGCATGTATCT--ATATGAA 12585
Query 12998 GCCGTCCACCCAGATATTATTTTGGCTCCTGGCTGCGCCGTAGACTTTACTACGAGCCGC 13057
|| | || || || | || || ||| ||| || | || |||| | || |
Sbjct 12586 GCATTTCATCCCGACGTGATCTTAAGTCCACACTGTGCTATTGATTTTAGCAAAAGTAGA 12645
Query 13058 TTAAACAACTTGCTTGGCATTCGGAAAAGGCTTCCATTCCAAGAGGGATTTCAG-ATCAC 13116
||||| || | | || || | ||||| | |||| || || |||||| | |||||
Sbjct 12646 TTAAATAATCTATTGGGTATAAGAAAAAGATTACCATATCA-GAAGGATTTTATTATCAC 12704
Query 13117 TTATGAAGATTTAGTTGGGGGAAACATTCCTGCGCTGCTAGATGTACA-GAATTATGACG 13175
|||||| |||||||| |||||||| ||||| || || |||| || | | ||| ||
Sbjct 12705 TTATGATGATTTAGTAGGGGGAAATATTCCCGCTCTATTAGACTTAGAAGCATT-TGCTC 12763
Query 13176 AAAATGACCCCAC-CACTATTCGTCCAATAACTGAAGATCCATCAAGGCGGTCT-TACCA 13233
||||| || ||| | | || | ||||| || || | | | || ||
Sbjct 12764 AAAATAACATGGTTCACAAACC--CCTTT---TGAAGGACCCCCATGACAGAGACTATCA 12818
Query 13234 TGTAGGTGAAGACCCCACTGTGAGAGACACGTTT---ACATACTATAGAAGCTGGTATTT 13290
||| |||| || |||| | ||| ||||| || || || ||||| ||||||||
Sbjct 12819 TGTCGGTGGTGATCCCAAAGC---AGATGCGTTTGACACGTATTACAGAAGTTGGTATTT 12875
Query 13291 AGCTTACAATTACGGGGACCCCTTAAAAGG--AATTCGCAATGCCACGCTGCTAGTGACC 13348
||| || |||||||| | || | || || || || || || || |||
Sbjct 12876 AGCATATAATTACGGTC-CTCCAGATGGGGTTAAATCTAAA----ACACTTTTAACAACC 12930
Query 13349 CCTGACGTAACTTGCGGCATGGAGCAAGTATACTGGAGCATCCCAGATATGTATGTGGAG 13408
|| || || || || || || ||| ||||||||||| | |||||||| | ||
Sbjct 12931 CCAGATGTCACATGTGGTCCCGAACAAATATACTGGAGCCTTCCAGATATAGTTCAAGAA 12990
Query 13409 CCAGTGACGTTTAAGGCTAGTCAAAACGTGTCTAACTAT--CCAGTGATAGGTGTAGAGT 13466
|| || | ||||| ||| || || ||| | || || | || ||||| |
Sbjct 12991 CCTGTATCCTTTAAACCTACCTTTAAGTTGG--AACAAATGCCTGTTGTGGGAGTAGAAT 13048
Query 13467 TAATGCCTC-AGCGGCCTCGTAGTTTTTACAATGCTCAAGCGGTGTATTCTCAAATGATT 13525
| |||| | | ||| | ||| || || || || || |||||||| || ||| |
Sbjct 13049 TGTTGCCGCTAAAAGCCAGGGCGTTCTTT-AACGCCCAGGCTGTGTATTCGCAGATGTTA 13107
Query 13526 CAAGAAAACACTAATCAGACAATGGTCTTTAACCGCTTTCCTGACAACCAGATTTTCTTG 13585
|| ||| || ||| ||||| || | |||||||| || || || || |
Sbjct 13108 GCGGATTCAACTTCGCAAACACATGTCTTCAATAGATTTCCTGATAATCAAATCTTAATC 13167
Query 13586 CGGCCGCCAGAGTCTACTATCACCAGCATCAGTGAAAACGTGCCAACGCAGACAGACCAC 13645
|| || |||| | || || | |||||| |||||||||||| | ||| || |||
Sbjct 13168 CGTCCACCAGCTCCCACAATTTGCTCCATCAGCGAAAACGTGCCATCTTTGACGGATCAC 13227
Query 13646 GGAACGCTTCCTATTAGAAACAGTGTTTCTGGTGTTCAGCGCGTCACGTTAACAGACGCG 13705
||||| || || | | || || || |||| | ||||| || | |||||||||||
Sbjct 13228 GGAACAATTTCTTTAAAGAATAGCATTACTGGGATACAGCGTGTAATTTTAACAGACGCC 13287
Query 13706 AGACGTAGAGCGAGTCCTTACGTGTATAAAAG 13737
||| | ||| || ||| ||||| ||||||||
Sbjct 13288 AGAAGAAGAACGGTTCCATACGTATATAAAAG 13319
Score = 122 bits (134), Expect = 2e-23
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 23879 CTGAGAGCTAAGATTTTTCCTACCTTGTATGCTATATTTCAGCAAAGCAGAGGCCAGAAA 23938
|| ||| |||||| ||||| || ||||||||||| ||||| ||| || | || | |||
Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208
Query 23939 ACTAACCTTAAAATAAAAAACCGCACGCTAAGATCTCTAACAAAAAGCTGTCTTTACCAC 23998
| | | |||||| ||||| ||||| ||||||| || || || ||||||||||| |||
Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268
Query 23999 AAGCAAGAGAGTCAGCTGCAAAGAACTCTTGAAGACGCCGAAGCTCTGCTTCAAAAGTAC 24058
|| | || |||||||| || ||||| |||||||| || || || || | |||| |
Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGC 22328
Query 24059 TG 24060
||
Sbjct 22329 TG 22330
Score = 107 bits (118), Expect = 4e-19
Identities = 174/248 (70%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 7110 CCATGCCATGTGTAAGTTTCAACGTCATAAGTTaaaaaaaaTCTTTTAGTGTCATCGCAA 7169
|||||||| || |||||||||| ||||||||| | | | | | || || | |
Sbjct 7278 CCATGCCAGGTATAAGTTTCAATGTCATAAGTGATATAGACACGTTGTGTATGACTTACG 7337
Query 7170 GAGCCAATGGGCTGAAAAGAAATCTGCGACCACCACTCAGAAGATTTAAAATTGATGTGA 7229
||||||||||| |||||| || | |||||| ||| | | | | |||| | ||
Sbjct 7338 GAGCCAATGGGAAAAAAAGATATTTTTTTCCACCAGTCACATGTTGAAGAATTTACATGG 7397
Query 7230 TGAAAGTAAAAGTCTCGTCGTCGGACGGAGCATGTGTGCGAGTTGGCAAAAAAGTCTCCA 7289
||||| ||||| |||| || || ||| || |||| |||| ||| |||||| |||
Sbjct 7398 TGAAAATAAAAATCTCTTCTTCTGACTGAACATGAATGCGTGTTTTTAAAAAAACTACCA 7457
Query 7290 CAAAATTCACATTTTTGCGATGAT-TGAAAAGATTTTATTAAAAACACTTTGTTTTGCTT 7348
|||||||||||||| | || | | || ||||| ||||||||||| | ||| | ||
Sbjct 7458 CAAAATTCACATTTAT-TAATACTGTCAATTGATTTAATTAAAAACACCTGGTTGTCTTT 7516
Query 7349 AATTAAAA 7356
||| ||||
Sbjct 7517 AATCAAAA 7524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 105505457887336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |