Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000006.1 Length=35100 Score E Sequences producing significant alignments: (Bits) Value seq4931 367 3e-97 >seq4931 Length=27746 Score = 367 bits (406), Expect = 3e-97 Identities = 1235/1916 (64%), Gaps = 44/1916 (2%) Strand=Plus/Plus Query 18709 GCCCAACAGGCCTAACTACATTGGCTTCAGAGACAACTTTGTGGGACTCATGTACTACAA 18768 ||| |||||||| || || || || || || || |||||| | || | |||| || || Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 18769 CAGTACTGGCAACATGGGTGTGCTGGCTGGTCAGGCCTCTCAATTGAATGCTGTGGTCGA 18828 ||||| | |||| ||||||| | || ||||| | || || | |||||||| |||| Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 18829 CTTGCAAGACAGAAACACCGAGCTGTCTTACCAGCTCTTGCTAGATTCTCTGGGTGACAG 18888 | | ||||||||||| || || |||| || ||||| || ||||| | | || || Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 18889 AACCAGATACTTCAGCATGTGGAACTCTGCGGTGGATAGCTATGATCCAGATGTCAGGAT 18948 ||| |||| | |||| ||||||| || |||||| ||||||||||| ||| | || Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 18949 CATTGAAAATCATGGTGTGGAAGATGAACTTCCAAACTATTGCTTCCCATTGAATGGCAC 19008 ||| || ||| ||| || ||||| ||||||||||| |||||||| || || ||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443 Query 19009 TGGCACCAATTCAACATATCTTGGCGTAAAGGTGAAACCAGATCAAGATGGTGATGTTGA 19068 | | || ||| | ||| || || || |||| |||| | | Sbjct 16444 TT-CTCCTATTGATTATAC--TGCTGTTAA------------TCAAAATGGACAAGC--- 16485 Query 19069 AAGCGAGTGGGATAAAGATGATACCATTGCAAGGCAGAATCAAATCGCCAAGGGCAACGT 19128 || | | || | ||| | ||| |||| || || | ||| || || || Sbjct 16486 AATCAAT-------AACA--ATAACCCTGC---GCAGGTTCTTATAGGCAAAGGAAATGT 16533 Query 19129 CTTTGCCATGGAGATCAACCTCCAGGCCAACCTGTGGAAGAGTTTTCTGTACTCGAACGT 19188 |||||| |||||| | ||||||||||||||||| ||||||||| || || | Sbjct 16534 TGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATAT 16593 Query 19189 GGCCTTGTACCTGCCCGACTCCTACAAGTACACGCCGGCCAATGTTACGCTGCCCGCCAA 19248 || |||| |||||||| || || ||| || || ||||| |||| || Sbjct 16594 CGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCG--CAG 16651 Query 19249 CACCAACACCTACGAG--TACATGAACGGCCGCGTGGTAGCCCCCTCGCTGGTGGACGCC 19306 | || | ||| | |||||||| ||| | |||| ||||| || | Sbjct 16652 GATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGAT 16711 Query 19307 TACATCAACATAGGCGCCCGATGGTCGCTGGACCCCATGGACAACGTCAACCCCTTCAAC 19366 || ||||||||||| || | ||||| | || ||||||| || || || || || Sbjct 16712 TATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAAT 16771 Query 19367 CACCACCGCAATGCGGGCCTGCGCTACCGCTCCATGCTTCTGGGCAACGGCCGCTACGTG 19426 || ||| | ||| | || || | ||| | || ||| | || || || ||||| | Sbjct 16772 CATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCT 16831 Query 19427 CCCTTCCACATCCAAGTGCCCCAAAAGTTCTTTGCCATCAAGAACCTGCTCCTGCTCCCG 19486 |||| || || || || || |||||||| ||||| | || | |||| ||||| ||| Sbjct 16832 TCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCG 16891 Query 19487 GGCTCCTACACCTACGAGTGGAACTTCCGCAAGGATGTCAACATGATCCTGCAGAGTTCC 19546 || || |||| ||||| ||| || | || ||||| |||||||| |||||||| | Sbjct 16892 GGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACT 16951 Query 19547 CTCGGCAACGACCTGCGCGTCGACGGCGCCTCCGTCCGCTTCGACAGCGTCAACCTCTAC 19606 || ||||| || ||| | | ||||| || || || || |||||| | | ||| | Sbjct 16952 CTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTT 17011 Query 19607 GCCACCTTCTTCCCCATGGCGCACAACACCGCCTCCACCCTGGAAGCCATGCTGCGCAAC 19666 || || ||||| || ||| | || ||||| || || || |||||| | ||||| ||||| Sbjct 17012 GCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAAT 17071 Query 19667 GACACCAACGACCAGTCCTTCAACGACTACCTCTCGGCCGCCAACATGCTCTACCCCATC 19726 || ||||| ||||||||| |||||| || || || |||||||| || | || Sbjct 17072 GAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATT 17131 Query 19727 CCGGCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCGCAACTGGGCCGCTTTTCGC 19786 || | | | | || ||||| || ||| | Sbjct 17132 CCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191 Query 19787 GGCTGGAGTTTCACCCGTCTGAAAACCA-AGGAAACTCCCTCCCTCGGCTCGGGTTTTGA 19845 || ||| || || | || ||||| | ||||||| || || | ||||| | ||||| Sbjct 17192 GGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGA 17250 Query 19846 CCCCTACTTTGTCTACTCGGGCTCGATCCCCTACCTTGACGGACCCTTTTACCTTAAC-C 19904 ||| |||||| ||||||||||| ||||| || || | ||||||| ||| | | Sbjct 17251 CCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA-TTTATCTC 17309 Query 19905 ACACCTTCAAGAAAGTCTCCATCATGTTCGACTCCTCGGTCAGCTGGCCCGGCAACGACC 19964 |||| ||| || || |||| ||| || || || || || ||||| || || ||| Sbjct 17310 ACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACA 17369 Query 19965 GGCTGCTCACGCCGAACGAGTTCGAGATCAAGCGCAGCGTCGACGGGGAAGGCTACAACG 20024 | || | | || || || || | || || | || |||| ||||||||| ||| Sbjct 17370 GACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACA 17429 Query 20025 TGGCCCAATGCAACATGACCAAGGACTGGTTCCTCGTCCAGATGCTCTCCCACTACAACA 20084 | || ||| || || ||||| |||| | | || |||||| | |||||||| | Sbjct 17430 CCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATA 17489 Query 20085 TCGGCTACCAGGGCTTCCACGTGCCCGAGGGCTACAAGGACCGCATGTACTCCTTCTTCC 20144 |||| ||||| || || ||| | ||| | || || || | |||| ||||| || Sbjct 17490 TCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAA 17549 Query 20145 GCAACTTCCAGCCCATGAGCAGGCAGGTGGTCGAT-GAGATCA-ACTACAAGGACTACAA 20202 | || || | |||||| | || || || || ||| | | | || || | || | Sbjct 17550 GAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAA--AATATCA 17607 Query 20203 GGCCGTCACCCTGCCCTTCCAGCACAACAACTCGGGCTTCACCGGCTACCTTGCACCCAC 20262 |||| | || | ||||| || || || || || | | | || |||| Sbjct 17608 ACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTT 17667 Query 20263 CATGCGCCAAGGGCAGCCCTACCCCGCCAACTTCCCCTACCCGCTCATCGGCCAGACA-G 20321 ||| ||||| || || || ||| |||| || | |||||||||||| | ||| | Sbjct 17668 TGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGA-ACAGG 17726 Query 20322 CCGTGCCATCCGTCACCCAGAAAAGTCTCCTCTGCGACAGGGTCATGTGGCGCATCCCCT 20381 | | | || | || |||| || | | || ||||| ||||| | || || | Sbjct 17727 CAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGT 17786 Query 20382 TCTCCAGCAACTTCATGTCCATGGGCGCCTTCACCGACCTGGGTCAGAACATGTTCTACG 20441 ||||| |||||| ||||||||||| | | || || ||||| || || || | || | Sbjct 17787 TCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATG 17846 Query 20442 CCAACTCGGCCCACGCGCTCGACATGACCTTCGAGGTGGACCCCATGGATGAGCCCACCG 20501 | || || || || || | |||||||| |||| || || | ||||| || || || Sbjct 17847 CAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTT 17906 Query 20502 TCCTCTATCTTCTCTTCGAAGTGTTCGACGTGGTCAGAGTGCACCAGCCGCACCGCGGCG 20561 ||| | || || ||||| || ||| || ||||||||| ||||| || || || | Sbjct 17907 ATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTG 17966 Query 20562 TCATCGAGGCCGTCTACCTGCGCACGCCGTTCTCCGCCGGAAACGCCACCACCTAA 20617 |||| || | | || || | || || || || || || |||||| | || ||| Sbjct 17967 TCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 113 bits (124), Expect = 1e-20 Identities = 259/386 (67%), Gaps = 3/386 (1%) Strand=Plus/Plus Query 17779 CGAAGATGGCCACCCCCTCGATGATGCCGCAGTGGGCGTACATGCACATCGCCGGGCAGG 17838 ||||||||||||| ||||||||| | ||||| ||| | ||| | || ||||| || || | Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368 Query 17839 ACGCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGCGCCACCGACACGTAC 17897 | || || || || | | | | | | ||| || ||||| |||| ||||| |||||| Sbjct 15369 ATGCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 17898 TTCAGCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCCCCGACCCACGATGTGACCACG 17957 || ||| || | || ||||| || || ||||| || ||||| |||||||| || ||| Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 17958 GACCGGTCCCAGCGTCTGACGCTGCGCTTTGTGCCCGTGGATCGCGAGGACAC-CAGTAC 18016 || | || ||| | || | | ||||| || | ||| || || || ||||| Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547 Query 18017 TCGTACAAGGCGCGCTTCACTCTGGCCGTGGGCGACAACCGGGTGCTAGACATGGCCAGC 18076 | | || || || || || |||| || || ||| | | |||| ||| || Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 18077 ACGTACTTTGACATCCGCGGCGTCCTGGACCGCGGTCCCAGTTTCAAACCCTACTCGGGC 18136 | || ||||| || || | ||| | |||||| ||| ||||| ||| ||| Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667 Query 18137 ACGGCTTACAACAGCCTTGCCCCCAA 18162 || || ||||| | ||||||||| || Sbjct 15668 ACAGCATACAATAACCTTGCCCCGAA 15693 Score = 87.8 bits (96), Expect = 4e-13 Identities = 416/649 (64%), Gaps = 19/649 (3%) Strand=Plus/Plus Query 6003 ATCTGGTCAGAAAAGACTAtttttttATTGTCAAGCTTGGTGGCAAAGGAGCCATAGAGG 6062 || || || | ||| | |||||||||||| || | | ||||||||||||| || || || Sbjct 5574 ATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGT 5633 Query 6063 GCGTTGGAGAGAAGCTTGGCGATGGATCTCATGGT-CTGATTTTTGTCACGGTCGGCGCG 6121 ||||| || | || || |||||| || | || ||| || | || || ||| Sbjct 5634 GCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTG-TTGTGGTTTTTTTCCGCGGC 5692 Query 6122 CTCCTTGGCCGCGATGTTGAGCTGG--ACATATTCGCGCGCGACACACTTCCATTCGGGA 6179 ||| || ||||| || || || ||| || ||||| | || || || ||||| | | Sbjct 5693 CTCTTTTGCCGCTATATT-AG-TGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCA 5750 Query 6180 AAGACGGTGGTGCGCTCGTCGGGCACGATCCTGACGCGCCAGCCGCGGTTATGCAGGGTG 6239 || || || ||||| || || || | ||| | ||| || || ||||||| || Sbjct 5751 AATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTA 5810 Query 6240 ACCAGGTCCACGCTGGTGGCCACCTCGCCGCGCAGGGGCTCGTTAGTCCAGCAGAGTCTG 6299 | || | | ||| || ||||| | | || || |||||||| || | Sbjct 5811 ATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGC 5870 Query 6300 CCGCCCTTGCGCGAGCAGAACGGGGGCAGCACATC-AAGCAGATGCTCGTCAGGGGGGTC 6358 ||||| || | ||| || || || || | ||||| ||| | | ||| |||||| ||| Sbjct 5871 CCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTAT-TCTTCGGCAGGGGCGTC 5929 Query 6359 CGCATCGATGGTGAAGATGCCGGGACAGAGTTTCTTGTCAAAATAGTCTATTTT-TGA-- 6415 ||||| || | ||| | || | || |||||||||| ||||| | | Sbjct 5930 AGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACC 5989 Query 6416 GGATGCATCATCCAAGGCCATCTGCC-ACTCGCGGGCGGCCATTGCTCGCTCGTAGGGGT 6474 || |||| | || | || ||| | |||| || || |||| | Sbjct 5990 GGTTGCA-------AAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGAT 6042 Query 6475 TGAGGGGCGGACCCCACGGCATGGGATGCGTGAGGGCGGAGGCGTACATGCCGCAAATGT 6534 | || || || || | |||||||||||||| | ||| ||| ||||| ||| |||| | Sbjct 6043 TAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATAT 6102 Query 6535 CGTAAACATAGATGGGCTCCGAGAAGATGCCGATGTTGGTGGGATAACAGCGCCCCCCGC 6594 | |||||||| || || ||| || | || |||| ||||| || || || ||||| | Sbjct 6103 CATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTC 6162 Query 6595 GGATGCTGGCGCGCACGTATTCATACAACTCGTGCGAGGGGCCAAGAAG 6643 |||||| | | || | ||||| | ||||| || ||| | ||||| Sbjct 6163 TGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112111539715292