Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000008.1 Length=35938 Score E Sequences producing significant alignments: (Bits) Value seq4931 455 7e-124 >seq4931 Length=27746 Score = 455 bits (504), Expect = 7e-124 Identities = 1269/1914 (66%), Gaps = 47/1914 (2%) Strand=Plus/Plus Query 19801 GCCCAACAGGCCTAATTACATTGCTTTTAGGGACAATTTTATTGGTCTAATGTATTACAA 19860 ||| |||||||| ||||| || | ||||||||| || ||||| || |||||| ||| || Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 19861 CAGCACGGGTAATATGGGTGTTCTGGCGGGCCAAGCATCGCAGTTGAATGCTGTTGTAGA 19920 ||| | | ||| ||||||| | || || ||| | || ||| | |||||||| | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 19921 TTTGCAAGACAGAAACACAGAGCTTTCATACCAGCTTTTGCTTGATTCCATTGGTGATAG 19980 | ||||||||||| ||||| | ||||| |||||| || | ||| | ||||| Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 19981 AACCAGGTACTTTTCTATGTGGAATCAGGCTGTTGACAGCTATGATCCAGATGTTAGAAT 20040 ||| | || | |||||||||| || || || ||||||||||| || |||| Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 20041 TATTGAAAATCATGGAACTGAAGATGAACTTCCAAATTACTGCTTTCCACTGGGAGGTGT 20100 || || ||| |||| ||||| |||||||||||||| |||||||| | || | Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGA-T 16442 Query 20101 GAT-TAATACAGAGACTCTTACCAAGGTAAAACCTAAAACAGGTCAGGAAAATGGATGGG 20159 | | | || || | ||| || || | ||| || || | || | || Sbjct 16443 GTTCTCCTATTGA---TTATACTGCTGTTAATC---AAAATGGACAAGCAA-TCAATAAC 16495 Query 20160 AAAAAGA-TGCTACAGAATTTTCAGATAAAAATGAAATAAGAGTTGGAAATAATTTTGCC 20218 || || ||| ||| | || | | ||| ||||| |||| | ||| Sbjct 16496 AATAACCCTGCG-CAGGTTCTT-ATAGGCAAAGGAAAT----GTTGAA--------TGC- 16540 Query 20219 ATGGAAATCAATCTAAATGCCAACCTGTGGAGAAATTTCCTGTACTCCAACATAGCGCTG 20278 ||||||||||| || ||||||||||||| ||||| ||||| || || || |||||| Sbjct 16541 ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTG 16600 Query 20279 TATTTGCCCGACAAGCTAAAGTACAGTCCTTCCAACGTAAAAATTTCTGATAACCCAAAC 20338 ||| ||||||| || | || || ||| | || || | | | | | | | | Sbjct 16601 TATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATC--AGC 16658 Query 20339 ACCTAC--GACTACATGAACAAGCGAGTGGTGGCTCCCGGGT-TAGTGGACTGCTACATT 20395 ||| | |||||||| || | || | |||| | || || || || Sbjct 16659 GGCTATATGCTTACATGAATTCTCGCATTCCAGC-CGGGGGTCTGGTAGAGGATTATATC 16717 Query 20396 AACCTTGGAGCACGCTGGTCCCTTGACTATATGGACAACGTCAACCCATTTAACCACCAC 20455 ||| | ||| | | ||||| | || ||||||| || || |||||||| || ||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 20456 CGCAATGCTGGCCTGCGCTACCGCTCAATGTTGCTGGGCAATGGTCGCTATGTGCCCTTC 20515 | ||| |||| || | ||| | || | | | || ||||||||||||| |||| Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837 Query 20516 CACATCCAGGTGCCTCAGAAGTTCTTTGCCATTAAAAACCTCCTTCTCCTGCCGGGCTCA 20575 || || ||||| || || ||||| ||||| |||||| | ||||| || ||||| || Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897 Query 20576 TACACCTACGAGTGGAACTTCAGGAAGGATGTTAACATGGTTCTGCAGAGCTCCCTAGGA 20635 |||| ||||| ||| || || || ||||| |||||| || ||||||| | || || Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957 Query 20636 AATGACCTAAGGGTTGACGGAGCCAGCATTAA-GTTTGATAGCATTTGCCTTTACGCCAC 20694 ||||| || |||| ||||||| | || ||| ||||| |||||| |||| | || || Sbjct 16958 AATGATCTGAGGGAGGACGGAG-CGTCAGTAACATTTGACAGCATTAGCCTATTTGCTAC 17016 Query 20695 CTTCTTCCCCATGGCCCACAACACCGCCTCCACGCTTGAGGCCATGCTTAGAAACGACAC 20754 ||||| || ||| | || ||||| || || || || || | |||||| | || || Sbjct 17017 TTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076 Query 20755 CAACGACCAGTCCTTTAACGACTATCTCTCCGCCGCCAACATGCTCTACCCTATACCCGC 20814 ||||| |||||||| ||||||||| ||| || |||||||| || |||| || | Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTAT-TCCTC 17135 Query 20815 CAACGCTACCAAC-GTGCCCATATCCATCCCCTCCCGCAACTGGGCGGCTTTCCGCGGCT 20873 | | | |||| ||||| || || || || | | || |||||||| || | || | Sbjct 17136 CGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195 Query 20874 GGGCCTTCACGCGCCTTAAGACTA-AGGAAACCCCATCACTGGGCTCGGGCTACGACCCT 20932 |||| || || | | ||| || | ||||||| ||| | | ||||| | | ||||| Sbjct 17196 GGGCATTTACTAGAC-TAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCA 17254 Query 20933 TATTACACCTACTCTGGCTCTATACCCTACCTAGATGGAACCTTTTACCTCAACCACACC 20992 || | | ||||| ||||| || || || |||| |||||||| | ||||| Sbjct 17255 TACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACT 17314 Query 20993 TTTAAGAAGGTGGCCATTACCTTTGACTCTTCTGTCAGCTGGCCTGGCAATGACCGCCTG 21052 | | ||||||||||| ||||| ||||| || || |||||||| |||||| | || Sbjct 17315 ATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTT 17374 Query 21053 CTTACCCCCAACGAGTTTGAAATTAAGCGCTCAGTTGACGGGGAGGGTTACAACGTTGCC 21112 | | || || || ||| | || || | || |||| ||| || || ||| | Sbjct 17375 TTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCT 17434 Query 21113 CAGTGTAACATGACCAAAGACTGGTTCCTGGTACAAATGCTAGCTAACTACAACATTGGC 21172 ||| | | || || || || |||| || | |||||||| ||| ||||||| || || Sbjct 17435 CAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGA 17494 Query 21173 TACCAGGGCTTCTATAT-CCCAGAGAGCTACAAGGACCGCATGTACTCCTTCTTTAGAAA 21231 ||||| || || | | |||| ||| || || || | |||| ||||| || ||||| Sbjct 17495 TACCAAGGTTTTCACCTACCCACAGA-TTATAAAGATAGATTGTATTCCTTTTTAAGAAA 17553 Query 21232 CTTCCAGCCCATGAGCCGTCAGGTGGTGGATGATACTAAATACAAGGACTACCAACAGGT 21291 || | |||||| | | || || |||||| | ||| | | || |||| || Sbjct 17554 TTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGT 17613 Query 21292 GGGCATCCTACACCAACACAACAACTCTGGATTTGTTGGCTACCTTGCCCCCACCATGCG 21351 | | | | || || || || || || ||| | | || ||| ||| Sbjct 17614 TGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTTGGGCG 17673 Query 21352 CGAAGGACAGGCCTA-CCCTGCTAACTTCCCCTATCCGCTTATAGGCAAGACC--GCAGT 21408 |||| || | || ||||| ||||| || | ||||| || || ||| | |||| Sbjct 17674 ACAAGGCCATCCTTATCCCTG-TAACTGGCCTTTCCCGCTCATCGG--AGAACAGGCAGG 17730 Query 21409 TGACAGCATTACCCAGAAAAAGTTTCTTTGCGATCGCACCCTTTGGCGCATCCCATTCTC 21468 | | | |||||| |||| ||| ||| | || || | || || ||| | || || ||||| Sbjct 17731 TAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTC 17790 Query 21469 CAGTAACTTTATGTCCATGGGCGCACTCACAGACCTGGGCCAAAACCTTCTCTACGCCAA 21528 | ||||||||||||||||| |||| ||||| ||||| ||||| | || || || || Sbjct 17791 CTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAA 17850 Query 21529 CTCCGCCCACGCGCTAGACATGACTTTTGAGGTGGATCCCATGGACGAGCCCACCCTTCT 21588 || || || || |||||||||| | || || ||| | ||||| || || || || Sbjct 17851 TTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC- 17909 Query 21589 TTATG-TTTTGTTTGAAGTCTTTGACGTGGTCCGTGTGCACCGGCCGCACCGCGGCGTCA 21647 | ||| | | |||||||| |||||| || | | ||||| | ||| || || || |||| Sbjct 17910 TCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCA 17969 Query 21648 TCGAAACCGTGTACCTGCGCACGCCCTTCTCGGCCGGCAACGCCACAACATAAA 21701 | ||| | || || | || ||||| ||||| || |||||| ||||||||| Sbjct 17970 TAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAA 18023 Score = 98.7 bits (108), Expect = 2e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26883 CTTAGAAACAGGATTTTTCCCACTCTGTATGCTATATTTCAACAGAGCAGGGGCCAAGAA 26942 || ||||| | ||| ||||| ||| |||||||||| |||||||| || | || || || Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208 Query 26943 CAAGAGCTGAAAATAAAAAACAGGTCTCTGCGATCCCTCACCCGCAGCTGCCTGTATCAC 27002 | | ||||| ||||| | || | |||| || ||| ||||| || |||||| Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268 Query 27003 AAAAGCGAAGATCAGCTTCGGCGCACGCTGGAAGACGCGGAGGCTCT 27049 |||| |||||| ||||| | | | || ||||||||||| ||||| || Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114791063709400