Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000010.1 Length=35524 Score E Sequences producing significant alignments: (Bits) Value seq4931 435 7e-118 >seq4931 Length=27746 Score = 435 bits (482), Expect = 7e-118 Identities = 900/1318 (68%), Gaps = 26/1318 (2%) Strand=Plus/Plus Query 20082 AACATTGGCGCCAGATGGTCTTTGGATGCCATGGACAACGTCAACCCCTTCAACCATCAC 20141 ||||| || |||| ||||| | |||| ||||||| || || || || || |||||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 20142 CGCAACGCTGGCCTGCGATACCGGTCCATGCTTCTGGGCAATGGTCGCTACG-TGCCTTT 20200 | || |||| || | ||| |||| ||| | || ||||||||||| | | ||||| Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837 Query 20201 CCACATTCAAGTGCCTCAGAAATTCTTTGCTGTGAAAAACCTGCTGCTTCTACCTGGTTC 20260 || ||||| || || || || || ||||| | |||| |||| || ||||| || || Sbjct 16838 -CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATC 16896 Query 20261 TTACACCTACGAGTGGAACTTCAGAAAGGATGTGAACATGGTCCTGCAGAGTTCCCTTGG 20320 |||| ||||| ||| || ||||| ||||| |||||| | |||||||| | ||||| Sbjct 16897 GTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGG 16956 Query 20321 CAATGATCTCCGAGTTGATG--GCGCCAGCATCAGTTTTACCAGCATCAATCTCTATGCC 20378 ||||||||| | | || | ||| ||| | || ||| |||||| | || | ||| Sbjct 16957 CAATGATCTGAGGGAGGACGGAGCGTCAGTAACA--TTTGACAGCATTAGCCTATTTGCT 17014 Query 20379 ACCTTCTTCCCCATGGCCCACAACACTGCCTCCACCCTTGAAGCCATGCTGCGCAACGAC 20438 || ||||| || ||| | || |||||||| || || || ||| | ||||| ||||| || Sbjct 17015 ACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAG 17074 Query 20439 ACCAATGATCAATCATTCAATGACTACCTTTCTGCAGC--TAACATGCTCTACCCCATCC 20496 || ||||| || ||| ||||| ||||| |||| ||||||||| || | || | Sbjct 17075 GTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTTAACATGCTTTATGCTATTC 17132 Query 20497 CTGCCAATGCTACCAAC-GTTCCCATCTCCATTCCCTCTCGCAACTGGGCCGCCTTCAGG 20555 || | || | | |||| || || ||||| ||||| | | || ||||| ||||| || Sbjct 17133 CTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191 Query 20556 GGCTGGTCCTTTACCAGACTGAAAACCA-AGGAGACTCCCTCTTTGGGATCAGGGTTCGA 20614 || ||| | ||||| ||||| ||||| | |||| || || | | || || | || || Sbjct 17192 GGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGA 17250 Query 20615 TCCCTACTTTGTTTACTCTGGTTCTATACCCTACCTGGATGGTACCTTCTACCTCAACCA 20674 || |||||| ||||| || || || || || ||||| ||||| || | || Sbjct 17251 CCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCA 17310 Query 20675 CACTTTCAAGAAAGTCTCTATCATGTTTGACTCTTCAGTCAGCTGGCCTGGTAATGACAG 20734 |||| ||| || || | || |||||| |||||||| || |||||||| |||||||| Sbjct 17311 CACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAG 17370 Query 20735 ATTGCTAACTCCAAACGAGTTCGAAATCAAGCGCACAGTTGATGGGGAAGGCTACAATGT 20794 | | ||| || || || || | || || | || || | ||||||||| || Sbjct 17371 ACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACAC 17430 Query 20795 GGCCCAATGTAACATGACCAAAGACTGGTTTCTGGTCCAGATGCTTGCCAACTACAACAT 20854 | || | | || || || || |||| | || | || ||||| || ||||||| || Sbjct 17431 CTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATAT 17490 Query 20855 TGGATACCAGGGTTTCTATGTTCCTGAGGGTTACAAGGATCGCATGTATTCCTTCTTCAG 20914 |||||||| ||||| | | || | ||| || ||| | |||||||||| || || Sbjct 17491 CGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAG 17550 Query 20915 AAACTTCCAGCCCATGAGTAGACAGGTGGTTGATGAGATTAACTACAAAGACTATAAAGC 20974 ||| || | |||||| ||||||| || || ||| ||| || | ||| || | Sbjct 17551 AAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACC 17610 Query 20975 TGTCGCCGTACCCTACCAGCATAATAACTCTGGCTTTGTGGGTTA-CATGGCTCCTACCA 21033 || || | || ||||||||||| || || ||| | |||| ||| Sbjct 17611 CGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCT-TTG 17669 Query 21034 TGCGTCAGGGTCAAGCGTA-CCCTGCTAACTACCCATACCCCCTAATTGGA-ACCACTGC 21091 ||| || || || | || ||||| ||||| || | ||| || || ||| | || || Sbjct 17670 GGCGACAAGGCCATCCTTATCCCTG-TAACTGGCCTTTCCCGCTCATCGGAGAACA-GGC 17727 Query 21092 AG---TAACCAGTGTCACCCAGAAAAAATTCCTGTGTGACAGGACCATGTGGCGCATCCC 21148 || ||||| | || |||| |||||| | |||||||| || ||||| | || || Sbjct 17728 AGGTAAAACCA---TTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCC 17784 Query 21149 ATTCTCTAGCAACTTCATGTCCATGGGTGCCCTTACAGACCTGGGACAGAACTTGCTGTA 21208 ||||| |||||| ||||||||||| | || ||||| |||||||| || ||||| || Sbjct 17785 GTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATA 17844 Query 21209 CGCCAACTCAGCCCATGCGCTGGACATGACTTTTGAGGTGGATCCCATGGATGAGCCCAC 21268 || || ||||| ||||| | |||||||| | || || ||| | ||||| || || || Sbjct 17845 TGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAAC 17904 Query 21269 CCTGCTTTATCTTCTTTTCGAAGTATTCGACGTGGTCAGAGTGCACCAACCACATCGCGG 21328 || | || || |||||||| ||| || ||||||||| || || || || || Sbjct 17905 TTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGG 17964 Query 21329 CGTCATCGAGGCCGTCTACCTGCGCACACCGTTCTCGGCTGGTAACGCCACCACATAA 21386 ||||| || | | || || | || || || ||||| ||||||||| | |||||| Sbjct 17965 TGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 206 bits (228), Expect = 6e-49 Identities = 286/398 (72%), Gaps = 12/398 (3%) Strand=Plus/Plus Query 19389 TATGCAGAAAATGTGGATCTAGAAACTCCAGACACTCATGTGGTGTACAAACCTGGAGCT 19448 ||||||||| || ||||| || || ||||||| ||||| | ||||||||| | | || Sbjct 16043 TATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGC---ATCT 16099 Query 19449 TCAG---ATGCTAGT---TCTCATGCAAACCTTGGTCAACAGTCCATGCCCAATAGACCT 19502 | | ||| | |||| ||| ||| | ||| || | ||| || || || Sbjct 16100 CCCGGGCATGAAAAAGACTCTCTTGC---CCTCGCTCAGCAAAGCGCGCCAAACAGGCCA 16156 Query 19503 AACTATATTGGCTTCAGGGACAACTTCATCGGACTCATGTACTATAACAGTACTGGCAAC 19562 || ||||| || || ||||| ||||| ||||| | |||| |||||||||| | |||| Sbjct 16157 AATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAATAGCAAT 16216 Query 19563 ATGGGAGTGCTGGCTGGACAAGCGTCTCAGCTAAATGCAGTGGTTGACTTGCAAGACAGA 19622 |||| || | || || ||| |||| ||||| ||||| || | ||| | ||||||||| Sbjct 16217 TTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCAAGACAGA 16276 Query 19623 AACACAGAATTGTCATATCAACTCTTGCTTGATTCTCTGGGAGACAGAACCAGATATTTC 19682 || ||||||||||||||||| || || | ||| | | || ||||| |||||| | Sbjct 16277 AATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCGATATTAC 16336 Query 19683 AGCATGTGGAATCAAGCAGTGGATAGCTATGACCCAGATGTGCGTGTTATTGAAAACCAT 19742 ||| ||||||||||||| |||||| ||||| ||||| || || | || || || | Sbjct 16337 AGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGACAATATT 16396 Query 19743 GGTGTGGAAGATGAACTTCCCAACTATTGTTTTCCATT 19780 || || ||||| |||||||| || ||||| ||||| || Sbjct 16397 GGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTT 16434 Score = 141 bits (156), Expect = 2e-29 Identities = 442/672 (66%), Gaps = 18/672 (3%) Strand=Plus/Plus Query 6063 ATGCCTTTCATGA-GACTCTCGTCCATTTGGTCAGAAAAGACAATTTTCTTGTTGTCAAG 6121 ||| ||||||||| | | || || ||||| || | ||| | ||||| || || || | Sbjct 5550 ATGTCTTTCATGATGTCACTTGTA-ATTTGATCCGGAAACAGTATTTTTTTATTATCTAA 5608 Query 6122 CTTGGTGGCAAAGGATCCGTATAGGGCATTGGATAAAAGCTTGGCGATGGAGCGCATGGT 6181 | ||||||||||||| ||||| || || || || || || || |||||| ||| || Sbjct 5609 CCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGT 5668 Query 6182 TTGGTTCTTATCCTTGTCCGCACGCTCCTTGGCAGCAATGTTGAGTTGG-ACGTACTCGC 6240 ||| | | || ||||| ||| || || || || || ||| | ||||| || | Sbjct 5669 GCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTATATT-AGTGGCTACGTATTCTC 5727 Query 6241 GCGCCAGGCACTTCCATTCAGGAAAGATGGTCGTCAGTTCATCTGGCACGATTCTGACTC 6300 |||| ||| ||||| | ||| | || | |||||||| || | || | Sbjct 5728 TTGCCACGCAATTCCACTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCT 5787 Query 6301 GCCAGCCCCGATTATGCAGGGTGATTAGATCCACACTGGTGGCCACCTCGCCTCGGAGGG 6360 ||| || |||||||||| || || ||| | ||| || ||||||| | Sbjct 5788 TCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAAT 5847 Query 6361 GCTCGTTGGTCCAGCAGAGTCGACCCCCTTTTCTTGAACAGAAAggggggagggggTCTA 6420 || || |||||||| || || || |||||||| ||||| || || || | |||| Sbjct 5848 TTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTA 5907 Query 6421 -GCATGAGTTCATCAGGGGGGTCTGCATCCATGGTGAATATTCCTGGGAGCAGATCTTTG 6479 | || ||| |||||| ||| ||||| || | || | || | ||| | | Sbjct 5908 AGTATTC-TTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGG 5966 Query 6480 TCAAAATAGCTAAT---GTGAGCGGGGTCATCCAAAGCCATCTGCCATTCTC---GAGCT 6533 ||||||||| ||| || | ||| | |||||| | || || || ||| Sbjct 5967 TCAAAATAGGAAATTTTGTCACCGGT----TGCAAAGCGTTTTGA-ATACTGATAGAGA- 6020 Query 6534 GCCAGCGCGCGTTCATAGGGATTGAGTGGGGTGCCCCATGGCATGGGGTGGGTGAGTGCA 6593 |||| | ||| ||||||| ||||| | ||| | |||||||| || || | ||| Sbjct 6021 GCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCG 6080 Query 6594 GAGGCATACATGCCACAGATGTCATAGACATACAGTGGTTCTTCGAGGATGCCGATGTAG 6653 ||||||||| || | || ||||| ||||| | ||||| || | | || ||||| Sbjct 6081 CTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAA 6140 Query 6654 GTGGGATAACAGCGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGAGTTCATGCGAG 6713 ||||| || || || ||||||||||||||| ||| ||| | ||||| | || || || Sbjct 6141 GTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGAC 6200 Query 6714 GGGGCGAGAAGA 6725 ||||| |||||| Sbjct 6201 GGGGCCAGAAGA 6212 Score = 127 bits (140), Expect = 5e-25 Identities = 216/311 (69%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 4198 ATATCTTTAAGGAGCAGGCTGATTGCAACTGGGAGCCCCTTGGTGTATGTGTTTACAAAT 4257 |||||||| | | ||| ||||||| | || || || || || || || || | |||| Sbjct 3679 ATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAAT 3738 Query 4258 CTGTTAAGCTGAGATGGATGCATTCTGGGTGAAATTATATGCATTTTTGACTGTATCTTG 4317 ||||| ||||||| || |||||| |||| | |||||| ||| | || || || Sbjct 3739 CTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTT 3798 Query 4318 AGGTTGGCAATGTTGCCGCCCAGATCCCGTCTCGGGTTCATGTTATGCAGGACCACCAAG 4377 || ||| || || || | | ||| || ||||||||| ||||| | ||||| || Sbjct 3799 AGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAAC 3858 Query 4378 ACGGTGTATCCGCTGCACTTAGGAAATTTATCATGCAGCTTAGATGGAAAAGCATGAAAA 4437 | ||| ||||||||| ||| |||| ||| || || || ||||| || |||||| Sbjct 3859 AGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAA 3918 Query 4438 AATTTGG--AGACGCCTTTGTGTCCGCCCAGATTCTCCATGCACTCATCCATGATGATAG 4495 ||||| | | | | | ||| || || | ||| ||||| |||||||| ||||| || | Sbjct 3919 AATTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGG 3976 Query 4496 CGATGGGGCCG 4506 | ||||| ||| Sbjct 3977 CTATGGGTCCG 3987 Score = 87.8 bits (96), Expect = 4e-13 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 21485 ACCCTATTTTCTGGGAACCTTTGACAAACGCTTCCCGGGGTTTATGGCTCCAGACAAGCT 21544 ||| | |||| |||| |||| ||| |||||||| ||||||||||| |||| | | Sbjct 18075 ACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTATCCGAAAGGACAGGTT 18134 Query 21545 GGCCTGCGCCATTGTCAACACAGCCGGTCGCGAGACGGGGGGAGAGCACTGGTTGGCTTT 21604 ||| |||||||| ||||| | |||||| ||| || | || ||| | || || Sbjct 18135 ATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTT 18194 Query 21605 TGGTTGGAACCCGCGCTCCAACACATGCTACCTTTTTGATCCATTTGGATTCTCGGAT 21662 || |||||| || || |||| ||| | ||||||||||| |||||||||||| Sbjct 18195 TGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGAT 18252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113467289325676