Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000010.1
Length=35524
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 435 7e-118
>seq4931
Length=27746
Score = 435 bits (482), Expect = 7e-118
Identities = 900/1318 (68%), Gaps = 26/1318 (2%)
Strand=Plus/Plus
Query 20082 AACATTGGCGCCAGATGGTCTTTGGATGCCATGGACAACGTCAACCCCTTCAACCATCAC 20141
||||| || |||| ||||| | |||| ||||||| || || || || || ||||||
Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777
Query 20142 CGCAACGCTGGCCTGCGATACCGGTCCATGCTTCTGGGCAATGGTCGCTACG-TGCCTTT 20200
| || |||| || | ||| |||| ||| | || ||||||||||| | | |||||
Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837
Query 20201 CCACATTCAAGTGCCTCAGAAATTCTTTGCTGTGAAAAACCTGCTGCTTCTACCTGGTTC 20260
|| ||||| || || || || || ||||| | |||| |||| || ||||| || ||
Sbjct 16838 -CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATC 16896
Query 20261 TTACACCTACGAGTGGAACTTCAGAAAGGATGTGAACATGGTCCTGCAGAGTTCCCTTGG 20320
|||| ||||| ||| || ||||| ||||| |||||| | |||||||| | |||||
Sbjct 16897 GTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGG 16956
Query 20321 CAATGATCTCCGAGTTGATG--GCGCCAGCATCAGTTTTACCAGCATCAATCTCTATGCC 20378
||||||||| | | || | ||| ||| | || ||| |||||| | || | |||
Sbjct 16957 CAATGATCTGAGGGAGGACGGAGCGTCAGTAACA--TTTGACAGCATTAGCCTATTTGCT 17014
Query 20379 ACCTTCTTCCCCATGGCCCACAACACTGCCTCCACCCTTGAAGCCATGCTGCGCAACGAC 20438
|| ||||| || ||| | || |||||||| || || || ||| | ||||| ||||| ||
Sbjct 17015 ACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAG 17074
Query 20439 ACCAATGATCAATCATTCAATGACTACCTTTCTGCAGC--TAACATGCTCTACCCCATCC 20496
|| ||||| || ||| ||||| ||||| |||| ||||||||| || | || |
Sbjct 17075 GTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTTAACATGCTTTATGCTATTC 17132
Query 20497 CTGCCAATGCTACCAAC-GTTCCCATCTCCATTCCCTCTCGCAACTGGGCCGCCTTCAGG 20555
|| | || | | |||| || || ||||| ||||| | | || ||||| ||||| ||
Sbjct 17133 CTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191
Query 20556 GGCTGGTCCTTTACCAGACTGAAAACCA-AGGAGACTCCCTCTTTGGGATCAGGGTTCGA 20614
|| ||| | ||||| ||||| ||||| | |||| || || | | || || | || ||
Sbjct 17192 GGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGA 17250
Query 20615 TCCCTACTTTGTTTACTCTGGTTCTATACCCTACCTGGATGGTACCTTCTACCTCAACCA 20674
|| |||||| ||||| || || || || || ||||| ||||| || | ||
Sbjct 17251 CCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCA 17310
Query 20675 CACTTTCAAGAAAGTCTCTATCATGTTTGACTCTTCAGTCAGCTGGCCTGGTAATGACAG 20734
|||| ||| || || | || |||||| |||||||| || |||||||| ||||||||
Sbjct 17311 CACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAG 17370
Query 20735 ATTGCTAACTCCAAACGAGTTCGAAATCAAGCGCACAGTTGATGGGGAAGGCTACAATGT 20794
| | ||| || || || || | || || | || || | ||||||||| ||
Sbjct 17371 ACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACAC 17430
Query 20795 GGCCCAATGTAACATGACCAAAGACTGGTTTCTGGTCCAGATGCTTGCCAACTACAACAT 20854
| || | | || || || || |||| | || | || ||||| || ||||||| ||
Sbjct 17431 CTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATAT 17490
Query 20855 TGGATACCAGGGTTTCTATGTTCCTGAGGGTTACAAGGATCGCATGTATTCCTTCTTCAG 20914
|||||||| ||||| | | || | ||| || ||| | |||||||||| || ||
Sbjct 17491 CGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAG 17550
Query 20915 AAACTTCCAGCCCATGAGTAGACAGGTGGTTGATGAGATTAACTACAAAGACTATAAAGC 20974
||| || | |||||| ||||||| || || ||| ||| || | ||| || |
Sbjct 17551 AAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACC 17610
Query 20975 TGTCGCCGTACCCTACCAGCATAATAACTCTGGCTTTGTGGGTTA-CATGGCTCCTACCA 21033
|| || | || ||||||||||| || || ||| | |||| |||
Sbjct 17611 CGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCT-TTG 17669
Query 21034 TGCGTCAGGGTCAAGCGTA-CCCTGCTAACTACCCATACCCCCTAATTGGA-ACCACTGC 21091
||| || || || | || ||||| ||||| || | ||| || || ||| | || ||
Sbjct 17670 GGCGACAAGGCCATCCTTATCCCTG-TAACTGGCCTTTCCCGCTCATCGGAGAACA-GGC 17727
Query 21092 AG---TAACCAGTGTCACCCAGAAAAAATTCCTGTGTGACAGGACCATGTGGCGCATCCC 21148
|| ||||| | || |||| |||||| | |||||||| || ||||| | || ||
Sbjct 17728 AGGTAAAACCA---TTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCC 17784
Query 21149 ATTCTCTAGCAACTTCATGTCCATGGGTGCCCTTACAGACCTGGGACAGAACTTGCTGTA 21208
||||| |||||| ||||||||||| | || ||||| |||||||| || ||||| ||
Sbjct 17785 GTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATA 17844
Query 21209 CGCCAACTCAGCCCATGCGCTGGACATGACTTTTGAGGTGGATCCCATGGATGAGCCCAC 21268
|| || ||||| ||||| | |||||||| | || || ||| | ||||| || || ||
Sbjct 17845 TGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAAC 17904
Query 21269 CCTGCTTTATCTTCTTTTCGAAGTATTCGACGTGGTCAGAGTGCACCAACCACATCGCGG 21328
|| | || || |||||||| ||| || ||||||||| || || || || ||
Sbjct 17905 TTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGG 17964
Query 21329 CGTCATCGAGGCCGTCTACCTGCGCACACCGTTCTCGGCTGGTAACGCCACCACATAA 21386
||||| || | | || || | || || || ||||| ||||||||| | ||||||
Sbjct 17965 TGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Score = 206 bits (228), Expect = 6e-49
Identities = 286/398 (72%), Gaps = 12/398 (3%)
Strand=Plus/Plus
Query 19389 TATGCAGAAAATGTGGATCTAGAAACTCCAGACACTCATGTGGTGTACAAACCTGGAGCT 19448
||||||||| || ||||| || || ||||||| ||||| | ||||||||| | | ||
Sbjct 16043 TATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGC---ATCT 16099
Query 19449 TCAG---ATGCTAGT---TCTCATGCAAACCTTGGTCAACAGTCCATGCCCAATAGACCT 19502
| | ||| | |||| ||| ||| | ||| || | ||| || || ||
Sbjct 16100 CCCGGGCATGAAAAAGACTCTCTTGC---CCTCGCTCAGCAAAGCGCGCCAAACAGGCCA 16156
Query 19503 AACTATATTGGCTTCAGGGACAACTTCATCGGACTCATGTACTATAACAGTACTGGCAAC 19562
|| ||||| || || ||||| ||||| ||||| | |||| |||||||||| | ||||
Sbjct 16157 AATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAATAGCAAT 16216
Query 19563 ATGGGAGTGCTGGCTGGACAAGCGTCTCAGCTAAATGCAGTGGTTGACTTGCAAGACAGA 19622
|||| || | || || ||| |||| ||||| ||||| || | ||| | |||||||||
Sbjct 16217 TTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCAAGACAGA 16276
Query 19623 AACACAGAATTGTCATATCAACTCTTGCTTGATTCTCTGGGAGACAGAACCAGATATTTC 19682
|| ||||||||||||||||| || || | ||| | | || ||||| |||||| |
Sbjct 16277 AATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCGATATTAC 16336
Query 19683 AGCATGTGGAATCAAGCAGTGGATAGCTATGACCCAGATGTGCGTGTTATTGAAAACCAT 19742
||| ||||||||||||| |||||| ||||| ||||| || || | || || || |
Sbjct 16337 AGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGACAATATT 16396
Query 19743 GGTGTGGAAGATGAACTTCCCAACTATTGTTTTCCATT 19780
|| || ||||| |||||||| || ||||| ||||| ||
Sbjct 16397 GGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTT 16434
Score = 141 bits (156), Expect = 2e-29
Identities = 442/672 (66%), Gaps = 18/672 (3%)
Strand=Plus/Plus
Query 6063 ATGCCTTTCATGA-GACTCTCGTCCATTTGGTCAGAAAAGACAATTTTCTTGTTGTCAAG 6121
||| ||||||||| | | || || ||||| || | ||| | ||||| || || || |
Sbjct 5550 ATGTCTTTCATGATGTCACTTGTA-ATTTGATCCGGAAACAGTATTTTTTTATTATCTAA 5608
Query 6122 CTTGGTGGCAAAGGATCCGTATAGGGCATTGGATAAAAGCTTGGCGATGGAGCGCATGGT 6181
| ||||||||||||| ||||| || || || || || || || |||||| ||| ||
Sbjct 5609 CCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGT 5668
Query 6182 TTGGTTCTTATCCTTGTCCGCACGCTCCTTGGCAGCAATGTTGAGTTGG-ACGTACTCGC 6240
||| | | || ||||| ||| || || || || || ||| | ||||| || |
Sbjct 5669 GCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTATATT-AGTGGCTACGTATTCTC 5727
Query 6241 GCGCCAGGCACTTCCATTCAGGAAAGATGGTCGTCAGTTCATCTGGCACGATTCTGACTC 6300
|||| ||| ||||| | ||| | || | |||||||| || | || |
Sbjct 5728 TTGCCACGCAATTCCACTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCT 5787
Query 6301 GCCAGCCCCGATTATGCAGGGTGATTAGATCCACACTGGTGGCCACCTCGCCTCGGAGGG 6360
||| || |||||||||| || || ||| | ||| || ||||||| |
Sbjct 5788 TCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAAT 5847
Query 6361 GCTCGTTGGTCCAGCAGAGTCGACCCCCTTTTCTTGAACAGAAAggggggagggggTCTA 6420
|| || |||||||| || || || |||||||| ||||| || || || | ||||
Sbjct 5848 TTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTA 5907
Query 6421 -GCATGAGTTCATCAGGGGGGTCTGCATCCATGGTGAATATTCCTGGGAGCAGATCTTTG 6479
| || ||| |||||| ||| ||||| || | || | || | ||| | |
Sbjct 5908 AGTATTC-TTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGG 5966
Query 6480 TCAAAATAGCTAAT---GTGAGCGGGGTCATCCAAAGCCATCTGCCATTCTC---GAGCT 6533
||||||||| ||| || | ||| | |||||| | || || || |||
Sbjct 5967 TCAAAATAGGAAATTTTGTCACCGGT----TGCAAAGCGTTTTGA-ATACTGATAGAGA- 6020
Query 6534 GCCAGCGCGCGTTCATAGGGATTGAGTGGGGTGCCCCATGGCATGGGGTGGGTGAGTGCA 6593
|||| | ||| ||||||| ||||| | ||| | |||||||| || || | |||
Sbjct 6021 GCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCG 6080
Query 6594 GAGGCATACATGCCACAGATGTCATAGACATACAGTGGTTCTTCGAGGATGCCGATGTAG 6653
||||||||| || | || ||||| ||||| | ||||| || | | || |||||
Sbjct 6081 CTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAA 6140
Query 6654 GTGGGATAACAGCGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGAGTTCATGCGAG 6713
||||| || || || ||||||||||||||| ||| ||| | ||||| | || || ||
Sbjct 6141 GTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGAC 6200
Query 6714 GGGGCGAGAAGA 6725
||||| ||||||
Sbjct 6201 GGGGCCAGAAGA 6212
Score = 127 bits (140), Expect = 5e-25
Identities = 216/311 (69%), Gaps = 4/311 (1%)
Strand=Plus/Plus
Query 4198 ATATCTTTAAGGAGCAGGCTGATTGCAACTGGGAGCCCCTTGGTGTATGTGTTTACAAAT 4257
|||||||| | | ||| ||||||| | || || || || || || || || | ||||
Sbjct 3679 ATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAAT 3738
Query 4258 CTGTTAAGCTGAGATGGATGCATTCTGGGTGAAATTATATGCATTTTTGACTGTATCTTG 4317
||||| ||||||| || |||||| |||| | |||||| ||| | || || ||
Sbjct 3739 CTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTT 3798
Query 4318 AGGTTGGCAATGTTGCCGCCCAGATCCCGTCTCGGGTTCATGTTATGCAGGACCACCAAG 4377
|| ||| || || || | | ||| || ||||||||| ||||| | ||||| ||
Sbjct 3799 AGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAAC 3858
Query 4378 ACGGTGTATCCGCTGCACTTAGGAAATTTATCATGCAGCTTAGATGGAAAAGCATGAAAA 4437
| ||| ||||||||| ||| |||| ||| || || || ||||| || ||||||
Sbjct 3859 AGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAA 3918
Query 4438 AATTTGG--AGACGCCTTTGTGTCCGCCCAGATTCTCCATGCACTCATCCATGATGATAG 4495
||||| | | | | | ||| || || | ||| ||||| |||||||| ||||| || |
Sbjct 3919 AATTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGG 3976
Query 4496 CGATGGGGCCG 4506
| ||||| |||
Sbjct 3977 CTATGGGTCCG 3987
Score = 87.8 bits (96), Expect = 4e-13
Identities = 126/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 21485 ACCCTATTTTCTGGGAACCTTTGACAAACGCTTCCCGGGGTTTATGGCTCCAGACAAGCT 21544
||| | |||| |||| |||| ||| |||||||| ||||||||||| |||| | |
Sbjct 18075 ACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTATCCGAAAGGACAGGTT 18134
Query 21545 GGCCTGCGCCATTGTCAACACAGCCGGTCGCGAGACGGGGGGAGAGCACTGGTTGGCTTT 21604
||| |||||||| ||||| | |||||| ||| || | || ||| | || ||
Sbjct 18135 ATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTT 18194
Query 21605 TGGTTGGAACCCGCGCTCCAACACATGCTACCTTTTTGATCCATTTGGATTCTCGGAT 21662
|| |||||| || || |||| ||| | ||||||||||| ||||||||||||
Sbjct 18195 TGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGAT 18252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113467289325676
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