Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000011.1 Length=36519 Score E Sequences producing significant alignments: (Bits) Value seq4931 233 4e-57 >seq4931 Length=27746 Score = 233 bits (258), Expect = 4e-57 Identities = 1206/1930 (62%), Gaps = 60/1930 (3%) Strand=Plus/Plus Query 19208 TCAGCAAGCCATGCCCAACAGACCTAACTACATTGGTTTCAGAGACAACTTTATCGGGCT 19267 ||||||| | ||| ||||| || || || || ||||| || || |||||||||||| | Sbjct 16132 TCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTT 16191 Query 19268 CATGTACTACAACAGCACTGGCAATATGGGGGTGCTGGCCGGTCAGGCTTCTCAGCTGAA 19327 |||| || ||||| | | ||||| |||| || | |||||||| | || ||||| || Sbjct 16192 AATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAA 16251 Query 19328 TGCTGTGGTTGACTTGCAAGACAGAAACACCGAGCTGTCCTACCAGCTCTTGCTTGACTC 19387 |||||| | ||| | ||||||||||| || || |||| || ||||| || | || Sbjct 16252 TGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAA 16311 Query 19388 TCTGGGTGACAGAACCCGGTATTTCAGTATGTGGAATCAGGCGGTGGACAGCTATGATCC 19447 | | || ||||| || |||| ||| |||||||||| || ||||| |||||||| Sbjct 16312 TTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCC 16371 Query 19448 TGATGTGCGCATTATTGAAAATCATGGTGTGGAGGATGAACTTCCCAACTATTG-TTTCC 19506 || || || || || || ||| ||| || || || |||||||| || ||||| ||||| Sbjct 16372 AGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Query 19507 ---CTCTGGATGCTGTTGGCAGAACAGATACTTATCAGGGAATTAAGGCTAATGGAACTG 19563 |||||||| | | | ||| |||| || || ||| Sbjct 16432 GTTATCTGGATGTTCT--------------CCTAT----TGATTA----TACTG---CTG 16466 Query 19564 ATCAAACCACATGGACCAAAGATGACAGTGTCAATGA---TGCTAA---TGAGATAGGCA 19617 | || | | |||||| ||| || | |||| | ||| | | ||||||| Sbjct 16467 -TTAATCAAAATGGAC--AAGCAATCAATAACAATAACCCTGCGCAGGTTCTTATAGGCA 16523 Query 19618 AGGGTAATCCATTCGCCATGGAAATCAACATCCAAGCCAACCTGTGGAGGAACTTCCTCT 19677 | || ||| ||||||||||||||| ||||||||||||| ||| || || | Sbjct 16524 AAGGAAATGTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGT 16583 Query 19678 ACGCCAACGTGGCCCTGTACCTGCCCG---ACTCTTACAAGTACACGCCGGCCAATGTTA 19734 | | || | || ||||| ||||||| ||| ||| || ||| || || ||||| Sbjct 16584 ATTCTAATATCGCGCTGTATCTGCCCGATAACT-TTAAAA--CCACTCCCGCAAATGTGG 16640 Query 19735 CCCTGCC-CACCAACANNNNNNNNTACGATTACATGAACGGCCGGGTGGTGGCGCCCTCG 19793 |||| || | || || | ||||||||| || | | ||| | Sbjct 16641 TATTGCCGCAGGATCA-GCGGCTATATGCTTACATGAATTCTCGCAT--TCCAGCCGGGG 16697 Query 19794 --CTGGTGGACTCCTACATCAACATCGGGGCGCGCTGGTCGCTGGATCCCATGGACAACG 19851 ||||| || || |||||||| || | | ||||| | ||| ||||||| | Sbjct 16698 GTCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGG 16757 Query 19852 TGAACCCCTTCAACCACCACCGCAATGCGGGGCTGCGCTACCGCTCCATGCTCCTGGGCA 19911 | || || || || || ||| | ||| | || || | ||| | || ||| | || | Sbjct 16758 TTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAA 16817 Query 19912 ACGGGCGCTACGTGCCCTTCCACATCCAGGTGCCCCAGAAATTTTTCGCCATCAAGAGCC 19971 | || ||||| | |||| || || ||||| || || || ||||| || | || || Sbjct 16818 ATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTT 16877 Query 19972 TCCTGCTCCTGCCCGGGTCCTACACCTACGAGTGGAACTTCCGCAAGGACGTCAACATGA 20031 | || || || || || || |||| ||||| ||| || | || || || ||||||| Sbjct 16878 TGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGA 16937 Query 20032 TCCTGCAGAGCTCCCTCGGCAACGACCTGCGCACGGACGGGGCCTCCATCTCCTTCACCA 20091 | ||||||| | || ||||| || ||| | |||||| || || | | || || Sbjct 16938 TTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACA 16997 Query 20092 GCATCAACCTCTACGCCACCTTCTTCCCCATGGCGCACAACACGGCCTCCACGCTCGAGG 20151 |||| | ||| | || || ||||| || ||| | || ||||| || || || || || Sbjct 16998 GCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAA 17057 Query 20152 CCATGCTGCGCAACGACACCAACGACCAGTCCTTCAACGACTACCTCTCGGNNNNNNNNN 20211 | ||||| ||||| || ||||| ||||||||| |||||| || || Sbjct 17058 CTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACA 17117 Query 20212 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCATCTCCATCCCCTCGCGCAACT 20271 |||| ||||| || || | | || | Sbjct 17118 TGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATT 17177 Query 20272 GGGCCGCCTTCCGCGGCTGGTCCTTCACGCGTCTCAAGACCA-AGGAGACGCCCTCGCTG 20330 |||| ||||| | || ||| | || || | || || || | |||| || || | | Sbjct 17178 GGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATT 17236 Query 20331 GGCTCCGGGTTCGACCCCTACTTCGTCTACTCGGGCTCCATCCCCTACCTCGACGGNNNN 20390 ||||| | || ||||| ||||| ||||||||||| ||||| || || | Sbjct 17237 GGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACC 17296 Query 20391 NNNNNNNNNNNNNNNNNNNNNAAGAAGGTCTCCATCACCTTCGACTCCTCCGTCAGCTGG 20450 | ||||| |||| || || || || || || ||| Sbjct 17297 TTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGG 17356 Query 20451 CCCGGCAACGACCGGCTCCTGACGCCCAACGAGTTCGAAATCAAGCGCACCGTCGACGGC 20510 || || || ||| | || | | || || || || | || || | || |||| Sbjct 17357 CCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCG 17416 Query 20511 GAGGGCTACAACGTGGCCCAGTGCAACATGACCAAGGACTGGTTCCTGGTCCAGATGCTG 20570 || ||||| ||| | ||| ||| || || ||||| |||| || | || ||||| Sbjct 17417 GAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTC 17476 Query 20571 GCCCACTACAACATCGGCTACCAGGGCTTCTACGTGCCCGAGGGCTACAAGGACCGCATG 20630 || |||||||| ||||| ||||| || || || | ||| | || || || | || Sbjct 17477 GCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTG 17536 Query 20631 TACTCCTTCTTCCGCAACTTCCAGCCCATGAGCCGCCAGGTGGTGGA-CGAGGTCA-ACT 20688 || ||||| || | || || | |||||| | | || || ||||| | ||| | || Sbjct 17537 TATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACG 17596 Query 20689 ACAAGGACTACCAGGCCGTCACCCTGGCCTACCAGCACAACAACTCGGGCTTCGTCGGCT 20748 || | || || |||| | || || ||||| || || || || || | Sbjct 17597 GAAA--AATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACC 17654 Query 20749 ACCTCGCGCCCACCATGCGCCAGGGCCAGCCCTACCCCGCCAACTACCCCTACCCGCTCA 20808 | | ||| ||| || ||||| || || ||| |||| || | |||||||| Sbjct 17655 ATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCA 17714 Query 20809 TCGG-CAAGAGCGCCGTCACCAGCGTCACCCAGAAAAAGTTCCTCTGCGACAGGGTCATG 20867 |||| || || || | | | | | || |||| ||| || | || ||||| || Sbjct 17715 TCGGAGAACAG-GCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTG 17773 Query 20868 TGGCGCATCCCCTTCTCCAGCAACTTCATGTCCATGGGCGCGCTCACCGACCTCGGCCAG 20927 ||| | || || |||||| |||||| ||||||||||| | || || || || || || Sbjct 17774 TGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAA 17833 Query 20928 AACATGCTCTATGCCAACTCCGCCCACGCGCTAGACATGAATTTCGAAGTCGACCCCATG 20987 || |||| ||||| || || || || || ||||||||| ||||||| || | ||| Sbjct 17834 AATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATG 17893 Query 20988 GATGAGTCCACCCTTCTCTATGTTG-TCTTCGANNNNNNNNNNNNNNNCCGAGTGCACCA 21046 || || | || |||| ||| || | || || | ||||||| || Sbjct 17894 GAGGAACCAACTTATCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCA 17952 Query 21047 GCCCCACCGCGGCGTCATCGAGGCCGTCTACCTGCGCACCCCCTTCTCGGCCGGTAACGC 21106 ||| || || || ||||| || | | || || | |||||||| ||||| |||||||| Sbjct 17953 GCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGC 18012 Query 21107 CACCACCTAA 21116 | | || ||| Sbjct 18013 CGCAACATAA 18022 Score = 86.0 bits (94), Expect = 1e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 6556 AGGGACTGAGGGGCGTGCCCCAGGGCATGGGATGGGTAAGCGCGGAGGCGTACATGCCGC 6615 ||||| | || || | ||| ||||||||||||| || | ||| ||| ||||| ||| Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096 Query 6616 AGATGTCGTAGACGTAGAGGGGCTCCTCGAGGATGCCGATGTAGGTGGGGTAGCAGCGCC 6675 | || || || || || | || ||||| | | || ||||| ||||||||||| || | Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156 Query 6676 CCCCGCGGATGCTGGCGCGCACGTAGTCATACAGCTCGTGCGAGGGGGCGAGGAG 6730 |||| | |||||| | | || | ||||| | ||||| || ||||| || || Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Score = 84.2 bits (92), Expect = 5e-12 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 18312 AAGATGGCCACCCCATCGATGCTGCCCCAGTGGGCGTACATGCACATCGCCGGACAGGAC 18371 ||||||||||| || |||||||| || || ||| | ||| | || ||||| ||||| || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18372 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTTGCCCGCGCCACAGACACCTACTTC 18431 ||||| || || | ||| | || || ||||| |||| || || || ||||| Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430 Query 18432 AGTCTGGGGAACAAGTTTAGGAACCCCACGGTGGCGCCCACGCACGATGTGACCACCGA 18490 || | | || ||||| || || ||||| ||||| || |||||||| || || || Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116648824378346