Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000012.1
Length=30944
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 423 4e-114
>seq4931
Length=27746
Score = 423 bits (468), Expect = 4e-114
Identities = 1418/2183 (65%), Gaps = 60/2183 (3%)
Strand=Plus/Plus
Query 17275 GCTCCCAACCGACCAAATTACATCGGTTTTAGAGATAATTTTATCGGCCTGATGTACTAT 17334
|| || ||| | |||||||| || |||||||| ||||| |||||||| | |||| |||
Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201
Query 17335 AATAGCAATGGCAACCAGGGAGTGTTGGCGGGACAGGCTTCACAGCTCAATGCTGTTGTA 17394
|| || ||| |||| ||| || || || || || | |||||||| |||||||| |
Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261
Query 17395 GATTTACAGGACAGAAATACTGAGCTGAGTTACCAGTTTCTTTTGGATTCGCTCTATGAC 17454
|| | || ||||||||||| || || || ||| || | || ||| | | ||
Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321
Query 17455 CGGAGTCGGTACTTTTCA--TTGTGGAACCAAGCAATAGATAGCTACGATCCCCGGGTAC 17512
| | ||| || || || |||||||| ||||| | ||| || ||||| ||| |
Sbjct 16322 AGAACTCGATA--TTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCC 16379
Query 17513 GCATTATTGAAAATGACGGTGTAGAGGACGACATCACCTCTT-TTGCTTTTGACCTTCGG 17571
| || || || ||| || ||||| ||||| | | || ||||||| || |
Sbjct 16380 GAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTG 16439
Query 17572 GGAATAGGCGATCTACCGTACAAACAGGTGCAAACTCACAATGGA-AACCAA-CAGTCGG 17629
| | | ||| | | || | || || ||| |||||| || ||| || |
Sbjct 16440 GATGTTCTC---CTATTGATTATACTGCTGTTAA-TCAAAATGGACAAGCAATCAAT--- 16492
Query 17630 CCAACACTA--CCGACACTTGTTAC-ATTGGAAAGGGAAACATGGCTGCCATGGAGATAA 17686
|||| || || | | ||| || || || ||||| | | |||||| || |
Sbjct 16493 --AACAATAACCCTGCGCAGGTTCTTATAGGCAAAGGAAATGTTGAATGCATGGAAATCA 16550
Query 17687 ACATTCCAGCCAACTTATGGCTCGGCTTTTTGTACGCCAATGTGGCTCAGTATATGCCGG 17746
|||| | |||||| | ||| ||| |||| | ||| | || | |||| |||| |
Sbjct 16551 ACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCG 16610
Query 17747 ACGACTTTAAAGTGGACCCGTCGAACATTCAAATGCCACAGGACAAAACCACGTACGCTT 17806
| |||||||| || | || | | |||| ||||| | || ||||
Sbjct 16611 ATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTATATGCTT 16670
Query 17807 ACATGAACCAAAGAATTGCTCCTGCCGGG---CTTATAGAAACCTACGTAAACGTAGGCG 17863
||||||| | ||| || |||||| || |||| || | ||| ||||
Sbjct 16671 ACATGAATTCTCGCATT---CCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAA 16727
Query 17864 GGCGTTGGTCAGTTGACTTCATGGACACGGTCAATCCCTTCAATCATCACCGAAATGAAG 17923
| |||||| | || | ||||||||||| ||||| || ||||||||| ||||| |
Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787
Query 17924 GGCTAAAGTACCGGTCCCAGATATTAGGAAATGGGCGGTTTGTAGACTTTCACATTCAAG 17983
| | | |||| |||| ||| ||||||||||||| || | || |||||| ||||| |
Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGG 16847
Query 17984 TGCCTCAAAAATTTTTTGCTATCAAAAGTTTGCTTTTGCTCCCCGGCAGTTACACCTATG 18043
| || ||||| |||||||| | |||||||||||| |||| || || |||| || |
Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907
Query 18044 AGTGGAGCTTTCGCAAAGACGTAAACATGGTCTTGCAAAGCTCCTTAGGTAATGATCTCA 18103
| ||| ||| | ||||| ||||||||| | ||||| || | | || |||||||| |
Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967
Query 18104 GAGCTGACGGCGCAAGGCTCGAGATTCACAGTGTGAATCTTTACGCCAGTTTTTTCCCCA 18163
| | ||||| || | || |||| | | || | || | ||| || || |
Sbjct 16968 GGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGA 17027
Query 18164 TGGCGCACAATACAGCATCAACTCTTGAAGCGATGCTGCGTAATGAAACAAATGACCAGA 18223
|| | || || || || || ||||| ||| | ||||| || ||||| || || |||
Sbjct 17028 TGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGT 17087
Query 18224 CTTTTTTGGACTACCTGAGCAGCGCAACGATGATGTTTCCCATTCCTGCAGGTCAAACCC 18283
| || ||||| || ||||| | ||| | | | | |||||| | ||||||
Sbjct 17088 CCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAAACAA 17147
Query 18284 AAGTGCCAGTATCAATTCCAGCCAGAAACTGGGCAGCCTTTAGGGGTTGGAGCTTTACTC 18343
|||||| | || |||||||| || || ||||| |||||||| |||||| ||||||
Sbjct 17148 CAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTA 17207
Query 18344 GTATTAAACAACAAGAAACGCCCAACATAGGCTCACCGTATGACCCGTACTTTAAGTACA 18403
| | |||||||| ||||| || | ||| ||||| | | |||||| ||||||| ||||
Sbjct 17208 GACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACT 17267
Query 18404 GCGGAAGCATACCTTTCTTGGATGCTACTTTTTACCTAACACACACCTTTCAGCGA-GTT 18462
|| || || | | |||||| || ||||| || | |||| || |||| | ||
Sbjct 17268 CGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACA-CTATCAGAAAGGTG 17326
Query 18463 TCAATTATGTTTGACTCTTCAGTAAGTTGGCCAGGAAACGACCGACTTCTAACTCCAAAC 18522
| || |||||| ||||||||||||||||| ||||| ||| ||||| ||| || ||
Sbjct 17327 GCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAAT 17386
Query 18523 GAGTTTGAAATAAAACGTCACATTGACGCTGAAGGACTAT-GTGTGGGTCAAAGTAACAT 18581
|| ||| | |||||| | | | ||||| ||||| |||| ||| || | ||
Sbjct 17387 GAATTTCACATAAAAAGAGAGGTGGACGCGGAAGG-CTATAACACCTCTCAGAGCATAAT 17445
Query 18582 GACTAAGGACTGGTTTTTGGTGCAAATGCTGTCCAACTACAACATCGGATATCAGGGCTT 18641
|||||||| |||| | || | |||||||| | ||||||| |||||||| || || ||
Sbjct 17446 TACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTT 17505
Query 18642 TTATTTACCAGAAAACAACAAAGACAGAACATACTCTTTTGTTCGAAACTTTGAACCCCT 18701
| | |||| | | | ||||| ||| || || ||| | |||| ||||||||| |
Sbjct 17506 TCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCAT 17565
Query 18702 GGCCCGGCAAGTGGNNNNNNNNNNNNNNNNNNCTAACTATCGAGACGTTCCTCTTTCCAA 18761
| | ||||| | || |||| | |||| ||||| |
Sbjct 17566 GTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTT----A 17621
Query 18762 AAGAT----TTAACAATTCGGGTTGGAGAAGCGCCGGTCCTCCAATATTTGCTCGAGAGG 18817
|| || ||| ||||| |||| | || | | | | |||| ||| | |
Sbjct 17622 AATATCAGCATAATAATTCAGGTTTTAAAA---ACCATTATGGACCCTTTGGGCGACAAG 17678
Query 18818 GGGCGCCTTATCCTGCTAACTGGCCCTATCCACTGTGTGGAGAGGCGGCATGGGCTGCAA 18877
| |||||||| ||||||||| | || || ||||| |||| | | |
Sbjct 17679 GCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACCA 17738
Query 18878 AAACCCAAAGAAAATTTCTAGTTGACCGGTACA-TGTACCGCATTCCCTTTTCTAGCAAC 18936
|| || ||||||||| || ||| | | ||| ||| | ||||| || || ||||
Sbjct 17739 TTACTCAGAGAAAATTTTTATGTGA-CAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797
Query 18937 TTTATGTCAATGGGCGCTTTAACGGACCTGGGACAGAATTTGCTATACGCAAATTCCGCC 18996
|||||||| ||||| | |||| || |||||||| ||||||||||| |||||||| ||
Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857
Query 18997 CATTCTTTGGAAATGACTTTTAATGTGGACCCCATGCAAGAAGCCACTTTTCTGTACATT 19056
||| |||| || ||||| | | || || | ||| | ||| | |||| ||| ||
Sbjct 17858 CATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTCATGATG 17917
Query 19057 TTGTTTGAAGTCTTTGAC-TGTGTTCGCATCCACCAACCGCACAGGGGCATCATAGAGGC 19115
| |||||||| |||||| |||| | | || || || || | || ||||||| |
Sbjct 17918 CTATTTGAAGTATTTGACATGTG-CAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGT 17976
Query 19116 AGTGTACCTGCGCTCCCCGTTTTCAGCCGGCAACGCAACCACCTAATCGTATGGGTTCGT 19175
| || || | |||| ||||| || || ||||| | || ||| |||||| | |
Sbjct 17977 TATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA--ATATGGGGACCT 18034
Query 19176 CTGAAACAGAGCTCCGTCAACTGGTCGCTGACCTTGGAA--TAGGTTCTTTTTTAGGTAT 19233
| || || | | | | || | || || ||| || || |||||| ||||
Sbjct 18035 CAGAGGACGAAATAAAACGAATTATCTCCGA--TTTGAATGTACCTTGTTTTTTGGGTAC 18092
Query 19234 TTTTGATAAACACTTCCCCGGCTTTATAAGTGTTAACAAACCGGCT----TGTGCTATCG 19289
| |||||||| ||| || || ||||| | || || || | ||||| || |
Sbjct 18093 CTATGATAAACGCTTTCCGGGGTTTATCCG----AAAGGACAGGTTATGCTGTGCCATTG 18148
Query 19290 TTAATACAGCAAGTCGAGAAACTGGAGGGGTACACTGGCTAGCTATGGCTTGGTAT-CCT 19348
| || || | ||| ||| || || || || ||| | || | |||||| || |||
Sbjct 18149 TAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCT 18208
Query 19349 ACCTCTTCCACTTTTTACTTGTTTGATCCGTTTGGATTTTCGGATCGTAAACTGCAACAA 19408
| | | || |||||| |||||||||| || ||||| ||||||| | || || ||
Sbjct 18209 ATAT-TAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGATCAAGATTTGAAAAAA 18267
Query 19409 GTGTATAAGTTCGAGTACGAACG 19431
|| || || ||||| || || ||
Sbjct 18268 GTTTACAACTTCGAATATGAGCG 18290
Score = 122 bits (134), Expect = 2e-23
Identities = 502/782 (64%), Gaps = 20/782 (3%)
Strand=Plus/Plus
Query 3355 TAGTTTGCACATTTAGGTACATAGGCATTAAACCGTTTTGGGGGTGAAGGTACATCCATT 3414
|||| || ||||||| |||||||| | || | ||| | | | ||||||||||
Sbjct 3545 TAGTCTGAACATTTAAATACATAGGGGTCAATTCACATTGCGCGCTCATATACATCCATT 3604
Query 3415 GCATACATT--CATGTTCGGGGGAGGTGTTATAGATGATCCAGTCGTAATTTATGTGGTT 3472
| || || || || |||| |||| | || | |||||| || ||| | ||| |
Sbjct 3605 GTTGACTTTGACACGTA--GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTG-TA 3661
Query 3473 AGCGTTATGATGAAAA-ATATCTTTTAGCAAAAGGGTAATAGCAGTAGGCATGGCTTTAG 3531
|| | | | ||| |||||||||| || ||||| || || || | | ||||||
Sbjct 3662 AGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAG 3721
Query 3532 TGTAGGTGTTAATGAAGCGAGCAACTTGGGAAGGTTGCATTTTGGGGCTAATGATGTGGC 3591
| || || ||||| || | | || | ||||||||||||||||| | || ||
Sbjct 3722 TATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGAT 3781
Query 3592 ATTTGCTTTGGATTTTTAAAGTAGCAATGTTGCCCGCCTGGTCTTTTCTGGGGTTCATGT 3651
|||| ||| ||||||| || | || || || ||||||| |||||||| |
Sbjct 3782 ATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATAT 3841
Query 3652 TGTGCAGCACTACGAAAACAGAGTAACCGGTACACTGGGGAAAACGATCGTGTAGCTTTG 3711
| || | || || || | | |||| ||| | ||| |||| | || ||| ||||
Sbjct 3842 TATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTG 3901
Query 3712 AAGGAAAGGCATGGAAAAATTTTGCAAT---GCTTTTATGTTTTCCCAATTCCTCCATAC 3768
||||||| || || |||||||||||||| ||| || ||| || | |||||||
Sbjct 3902 AAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTT---CCCTCCTAAATTTTCCATAC 3958
Query 3769 ACTCATCCACAATAATACAAATGGGACCTCTTTGGGCCGCTTGGGCAAAAATGTTTTGGG 3828
||||||| | ||||| ||||| || ||| |||||| || |||| | || | |
Sbjct 3959 ACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATTATTTG 4018
Query 3829 GGTGTGTAACATCGTAGTTGTGGTCTGCTGTAAGGTCATCGTAGGTGAGTGTAATGAGTC 3888
| || | ||| || || | || | || || | ||| | ||| || ||
Sbjct 4019 GATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGCGAATC 4078
Query 3889 GAGGTTTTAAAGTTCCGCTTTTAGGAACAATGGTCTGTTGCGGACCGCATG-TATAGTTT 3947
|||| |||| || || | | ||| ||||| | | || |||| ||||||||
Sbjct 4079 GAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCC-CATGTTATAGTTT 4137
Query 3948 CCTTCAACTAGTTGTGCATTCCACGCTGAC---ATTTCTTGCGGGGGTATCATGTCGATT 4004
|| || | | |||||| ||||| |||| ||||| || ||||| ||||||||
Sbjct 4138 CCCTCTATAATTTGTGCTTTCCA---TGACATAATTTCCTGTGGGGGGATCATGTCTGCA 4194
Query 4005 TGAGGAACCACaaaaaaaaCGGTTTCGGGTGAAGGATCTATTAAATGACAGGAAAGAAGG 4064
| ||| ||||| || | || || || | |||| || ||| | | || | |||
Sbjct 4195 TAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGACGACATAAGA 4254
Query 4065 TTGCGGAGCAATTGCGACTTTCCGCTTCCTGTGGGCCCGTACACAATTGCAATCAGGGGT 4124
|| | | ||||| || ||||| || || || || || || | | |||||| |||
Sbjct 4255 TTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACCGGT 4314
Query 4125 TG 4126
||
Sbjct 4315 TG 4316
Score = 96.9 bits (106), Expect = 7e-16
Identities = 248/378 (66%), Gaps = 0/378 (0%)
Strand=Plus/Plus
Query 16432 ATGACGACGCCTTCAATGCAGCCCCAGTGGGCCTTCATGCACATCGCGGGACAGGACGCT 16491
||| | || || || |||| || || ||| | | | | || ||||| ||||| || |||
Sbjct 15314 ATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGATGCT 15373
Query 16492 TCCCAATACCTGTCACCAGGGGTGGTGCAGTTTGCAGCGGCCACAGATACGTACTTTTCT 16551
|| |||| | || || | | || || |||||| || || || |||||||||||
Sbjct 15374 TCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTTTCC 15433
Query 16552 CTCGGAAACAAGTTTCGCAATCCAACTGTGGCCCCCACCCATGACGTTACGACAGACCGG 16611
|| | | || ||| | ||||| || || || || || || || || || || || |
Sbjct 15434 CTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGAAAGA 15493
Query 16612 TCTCAAAGACTCACACTGCGTATAGTCCCGGTGGACAGAGAAGACAGCCAGTACACCTAC 16671
|| || ||||| | | | | || || | ||| | |||||| | ||||| || |
Sbjct 15494 TCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATACTTTT 15553
Query 16672 AAAACCAGGTTTCAACTTTCTGTTGGGGATAACCGAGTTCTGGACATGGCCAGCACTTAC 16731
||| || | |||||||| | || || |||||| || | | || ||| || | |||
Sbjct 15554 AAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAGTTAT 15613
Query 16732 TTTGACATTCGCGGCCGCCTCGACAGAGGCCCCAGCTTTAAACCCTACTCAGGAACGGCG 16791
||||| || || | |||||||| ||| |||||||| ||| || || ||
Sbjct 15614 TTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCACAGCA 15673
Query 16792 TATAACAGCCTGGCGCCG 16809
|| || | ||| || |||
Sbjct 15674 TACAATAACCTTGCCCCG 15691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 98822635515396
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