Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000012.1 Length=30944 Score E Sequences producing significant alignments: (Bits) Value seq4931 423 4e-114 >seq4931 Length=27746 Score = 423 bits (468), Expect = 4e-114 Identities = 1418/2183 (65%), Gaps = 60/2183 (3%) Strand=Plus/Plus Query 17275 GCTCCCAACCGACCAAATTACATCGGTTTTAGAGATAATTTTATCGGCCTGATGTACTAT 17334 || || ||| | |||||||| || |||||||| ||||| |||||||| | |||| ||| Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201 Query 17335 AATAGCAATGGCAACCAGGGAGTGTTGGCGGGACAGGCTTCACAGCTCAATGCTGTTGTA 17394 || || ||| |||| ||| || || || || || | |||||||| |||||||| | Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261 Query 17395 GATTTACAGGACAGAAATACTGAGCTGAGTTACCAGTTTCTTTTGGATTCGCTCTATGAC 17454 || | || ||||||||||| || || || ||| || | || ||| | | || Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321 Query 17455 CGGAGTCGGTACTTTTCA--TTGTGGAACCAAGCAATAGATAGCTACGATCCCCGGGTAC 17512 | | ||| || || || |||||||| ||||| | ||| || ||||| ||| | Sbjct 16322 AGAACTCGATA--TTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCC 16379 Query 17513 GCATTATTGAAAATGACGGTGTAGAGGACGACATCACCTCTT-TTGCTTTTGACCTTCGG 17571 | || || || ||| || ||||| ||||| | | || ||||||| || | Sbjct 16380 GAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTG 16439 Query 17572 GGAATAGGCGATCTACCGTACAAACAGGTGCAAACTCACAATGGA-AACCAA-CAGTCGG 17629 | | | ||| | | || | || || ||| |||||| || ||| || | Sbjct 16440 GATGTTCTC---CTATTGATTATACTGCTGTTAA-TCAAAATGGACAAGCAATCAAT--- 16492 Query 17630 CCAACACTA--CCGACACTTGTTAC-ATTGGAAAGGGAAACATGGCTGCCATGGAGATAA 17686 |||| || || | | ||| || || || ||||| | | |||||| || | Sbjct 16493 --AACAATAACCCTGCGCAGGTTCTTATAGGCAAAGGAAATGTTGAATGCATGGAAATCA 16550 Query 17687 ACATTCCAGCCAACTTATGGCTCGGCTTTTTGTACGCCAATGTGGCTCAGTATATGCCGG 17746 |||| | |||||| | ||| ||| |||| | ||| | || | |||| |||| | Sbjct 16551 ACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCG 16610 Query 17747 ACGACTTTAAAGTGGACCCGTCGAACATTCAAATGCCACAGGACAAAACCACGTACGCTT 17806 | |||||||| || | || | | |||| ||||| | || |||| Sbjct 16611 ATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTATATGCTT 16670 Query 17807 ACATGAACCAAAGAATTGCTCCTGCCGGG---CTTATAGAAACCTACGTAAACGTAGGCG 17863 ||||||| | ||| || |||||| || |||| || | ||| |||| Sbjct 16671 ACATGAATTCTCGCATT---CCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAA 16727 Query 17864 GGCGTTGGTCAGTTGACTTCATGGACACGGTCAATCCCTTCAATCATCACCGAAATGAAG 17923 | |||||| | || | ||||||||||| ||||| || ||||||||| ||||| | Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787 Query 17924 GGCTAAAGTACCGGTCCCAGATATTAGGAAATGGGCGGTTTGTAGACTTTCACATTCAAG 17983 | | | |||| |||| ||| ||||||||||||| || | || |||||| ||||| | Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGG 16847 Query 17984 TGCCTCAAAAATTTTTTGCTATCAAAAGTTTGCTTTTGCTCCCCGGCAGTTACACCTATG 18043 | || ||||| |||||||| | |||||||||||| |||| || || |||| || | Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907 Query 18044 AGTGGAGCTTTCGCAAAGACGTAAACATGGTCTTGCAAAGCTCCTTAGGTAATGATCTCA 18103 | ||| ||| | ||||| ||||||||| | ||||| || | | || |||||||| | Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967 Query 18104 GAGCTGACGGCGCAAGGCTCGAGATTCACAGTGTGAATCTTTACGCCAGTTTTTTCCCCA 18163 | | ||||| || | || |||| | | || | || | ||| || || | Sbjct 16968 GGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGA 17027 Query 18164 TGGCGCACAATACAGCATCAACTCTTGAAGCGATGCTGCGTAATGAAACAAATGACCAGA 18223 || | || || || || || ||||| ||| | ||||| || ||||| || || ||| Sbjct 17028 TGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGT 17087 Query 18224 CTTTTTTGGACTACCTGAGCAGCGCAACGATGATGTTTCCCATTCCTGCAGGTCAAACCC 18283 | || ||||| || ||||| | ||| | | | | |||||| | |||||| Sbjct 17088 CCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAAACAA 17147 Query 18284 AAGTGCCAGTATCAATTCCAGCCAGAAACTGGGCAGCCTTTAGGGGTTGGAGCTTTACTC 18343 |||||| | || |||||||| || || ||||| |||||||| |||||| |||||| Sbjct 17148 CAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTA 17207 Query 18344 GTATTAAACAACAAGAAACGCCCAACATAGGCTCACCGTATGACCCGTACTTTAAGTACA 18403 | | |||||||| ||||| || | ||| ||||| | | |||||| ||||||| |||| Sbjct 17208 GACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACT 17267 Query 18404 GCGGAAGCATACCTTTCTTGGATGCTACTTTTTACCTAACACACACCTTTCAGCGA-GTT 18462 || || || | | |||||| || ||||| || | |||| || |||| | || Sbjct 17268 CGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACA-CTATCAGAAAGGTG 17326 Query 18463 TCAATTATGTTTGACTCTTCAGTAAGTTGGCCAGGAAACGACCGACTTCTAACTCCAAAC 18522 | || |||||| ||||||||||||||||| ||||| ||| ||||| ||| || || Sbjct 17327 GCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAAT 17386 Query 18523 GAGTTTGAAATAAAACGTCACATTGACGCTGAAGGACTAT-GTGTGGGTCAAAGTAACAT 18581 || ||| | |||||| | | | ||||| ||||| |||| ||| || | || Sbjct 17387 GAATTTCACATAAAAAGAGAGGTGGACGCGGAAGG-CTATAACACCTCTCAGAGCATAAT 17445 Query 18582 GACTAAGGACTGGTTTTTGGTGCAAATGCTGTCCAACTACAACATCGGATATCAGGGCTT 18641 |||||||| |||| | || | |||||||| | ||||||| |||||||| || || || Sbjct 17446 TACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTT 17505 Query 18642 TTATTTACCAGAAAACAACAAAGACAGAACATACTCTTTTGTTCGAAACTTTGAACCCCT 18701 | | |||| | | | ||||| ||| || || ||| | |||| ||||||||| | Sbjct 17506 TCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCAT 17565 Query 18702 GGCCCGGCAAGTGGNNNNNNNNNNNNNNNNNNCTAACTATCGAGACGTTCCTCTTTCCAA 18761 | | ||||| | || |||| | |||| ||||| | Sbjct 17566 GTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTT----A 17621 Query 18762 AAGAT----TTAACAATTCGGGTTGGAGAAGCGCCGGTCCTCCAATATTTGCTCGAGAGG 18817 || || ||| ||||| |||| | || | | | | |||| ||| | | Sbjct 17622 AATATCAGCATAATAATTCAGGTTTTAAAA---ACCATTATGGACCCTTTGGGCGACAAG 17678 Query 18818 GGGCGCCTTATCCTGCTAACTGGCCCTATCCACTGTGTGGAGAGGCGGCATGGGCTGCAA 18877 | |||||||| ||||||||| | || || ||||| |||| | | | Sbjct 17679 GCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACCA 17738 Query 18878 AAACCCAAAGAAAATTTCTAGTTGACCGGTACA-TGTACCGCATTCCCTTTTCTAGCAAC 18936 || || ||||||||| || ||| | | ||| ||| | ||||| || || |||| Sbjct 17739 TTACTCAGAGAAAATTTTTATGTGA-CAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797 Query 18937 TTTATGTCAATGGGCGCTTTAACGGACCTGGGACAGAATTTGCTATACGCAAATTCCGCC 18996 |||||||| ||||| | |||| || |||||||| ||||||||||| |||||||| || Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857 Query 18997 CATTCTTTGGAAATGACTTTTAATGTGGACCCCATGCAAGAAGCCACTTTTCTGTACATT 19056 ||| |||| || ||||| | | || || | ||| | ||| | |||| ||| || Sbjct 17858 CATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTCATGATG 17917 Query 19057 TTGTTTGAAGTCTTTGAC-TGTGTTCGCATCCACCAACCGCACAGGGGCATCATAGAGGC 19115 | |||||||| |||||| |||| | | || || || || | || ||||||| | Sbjct 17918 CTATTTGAAGTATTTGACATGTG-CAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGT 17976 Query 19116 AGTGTACCTGCGCTCCCCGTTTTCAGCCGGCAACGCAACCACCTAATCGTATGGGTTCGT 19175 | || || | |||| ||||| || || ||||| | || ||| |||||| | | Sbjct 17977 TATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA--ATATGGGGACCT 18034 Query 19176 CTGAAACAGAGCTCCGTCAACTGGTCGCTGACCTTGGAA--TAGGTTCTTTTTTAGGTAT 19233 | || || | | | | || | || || ||| || || |||||| |||| Sbjct 18035 CAGAGGACGAAATAAAACGAATTATCTCCGA--TTTGAATGTACCTTGTTTTTTGGGTAC 18092 Query 19234 TTTTGATAAACACTTCCCCGGCTTTATAAGTGTTAACAAACCGGCT----TGTGCTATCG 19289 | |||||||| ||| || || ||||| | || || || | ||||| || | Sbjct 18093 CTATGATAAACGCTTTCCGGGGTTTATCCG----AAAGGACAGGTTATGCTGTGCCATTG 18148 Query 19290 TTAATACAGCAAGTCGAGAAACTGGAGGGGTACACTGGCTAGCTATGGCTTGGTAT-CCT 19348 | || || | ||| ||| || || || || ||| | || | |||||| || ||| Sbjct 18149 TAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCT 18208 Query 19349 ACCTCTTCCACTTTTTACTTGTTTGATCCGTTTGGATTTTCGGATCGTAAACTGCAACAA 19408 | | | || |||||| |||||||||| || ||||| ||||||| | || || || Sbjct 18209 ATAT-TAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGATCAAGATTTGAAAAAA 18267 Query 19409 GTGTATAAGTTCGAGTACGAACG 19431 || || || ||||| || || || Sbjct 18268 GTTTACAACTTCGAATATGAGCG 18290 Score = 122 bits (134), Expect = 2e-23 Identities = 502/782 (64%), Gaps = 20/782 (3%) Strand=Plus/Plus Query 3355 TAGTTTGCACATTTAGGTACATAGGCATTAAACCGTTTTGGGGGTGAAGGTACATCCATT 3414 |||| || ||||||| |||||||| | || | ||| | | | |||||||||| Sbjct 3545 TAGTCTGAACATTTAAATACATAGGGGTCAATTCACATTGCGCGCTCATATACATCCATT 3604 Query 3415 GCATACATT--CATGTTCGGGGGAGGTGTTATAGATGATCCAGTCGTAATTTATGTGGTT 3472 | || || || || |||| |||| | || | |||||| || ||| | ||| | Sbjct 3605 GTTGACTTTGACACGTA--GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTG-TA 3661 Query 3473 AGCGTTATGATGAAAA-ATATCTTTTAGCAAAAGGGTAATAGCAGTAGGCATGGCTTTAG 3531 || | | | ||| |||||||||| || ||||| || || || | | |||||| Sbjct 3662 AGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAG 3721 Query 3532 TGTAGGTGTTAATGAAGCGAGCAACTTGGGAAGGTTGCATTTTGGGGCTAATGATGTGGC 3591 | || || ||||| || | | || | ||||||||||||||||| | || || Sbjct 3722 TATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGAT 3781 Query 3592 ATTTGCTTTGGATTTTTAAAGTAGCAATGTTGCCCGCCTGGTCTTTTCTGGGGTTCATGT 3651 |||| ||| ||||||| || | || || || ||||||| |||||||| | Sbjct 3782 ATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATAT 3841 Query 3652 TGTGCAGCACTACGAAAACAGAGTAACCGGTACACTGGGGAAAACGATCGTGTAGCTTTG 3711 | || | || || || | | |||| ||| | ||| |||| | || ||| |||| Sbjct 3842 TATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTG 3901 Query 3712 AAGGAAAGGCATGGAAAAATTTTGCAAT---GCTTTTATGTTTTCCCAATTCCTCCATAC 3768 ||||||| || || |||||||||||||| ||| || ||| || | ||||||| Sbjct 3902 AAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTT---CCCTCCTAAATTTTCCATAC 3958 Query 3769 ACTCATCCACAATAATACAAATGGGACCTCTTTGGGCCGCTTGGGCAAAAATGTTTTGGG 3828 ||||||| | ||||| ||||| || ||| |||||| || |||| | || | | Sbjct 3959 ACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATTATTTG 4018 Query 3829 GGTGTGTAACATCGTAGTTGTGGTCTGCTGTAAGGTCATCGTAGGTGAGTGTAATGAGTC 3888 | || | ||| || || | || | || || | ||| | ||| || || Sbjct 4019 GATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGCGAATC 4078 Query 3889 GAGGTTTTAAAGTTCCGCTTTTAGGAACAATGGTCTGTTGCGGACCGCATG-TATAGTTT 3947 |||| |||| || || | | ||| ||||| | | || |||| |||||||| Sbjct 4079 GAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCC-CATGTTATAGTTT 4137 Query 3948 CCTTCAACTAGTTGTGCATTCCACGCTGAC---ATTTCTTGCGGGGGTATCATGTCGATT 4004 || || | | |||||| ||||| |||| ||||| || ||||| |||||||| Sbjct 4138 CCCTCTATAATTTGTGCTTTCCA---TGACATAATTTCCTGTGGGGGGATCATGTCTGCA 4194 Query 4005 TGAGGAACCACaaaaaaaaCGGTTTCGGGTGAAGGATCTATTAAATGACAGGAAAGAAGG 4064 | ||| ||||| || | || || || | |||| || ||| | | || | ||| Sbjct 4195 TAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGACGACATAAGA 4254 Query 4065 TTGCGGAGCAATTGCGACTTTCCGCTTCCTGTGGGCCCGTACACAATTGCAATCAGGGGT 4124 || | | ||||| || ||||| || || || || || || | | |||||| ||| Sbjct 4255 TTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACCGGT 4314 Query 4125 TG 4126 || Sbjct 4315 TG 4316 Score = 96.9 bits (106), Expect = 7e-16 Identities = 248/378 (66%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 16432 ATGACGACGCCTTCAATGCAGCCCCAGTGGGCCTTCATGCACATCGCGGGACAGGACGCT 16491 ||| | || || || |||| || || ||| | | | | || ||||| ||||| || ||| Sbjct 15314 ATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGATGCT 15373 Query 16492 TCCCAATACCTGTCACCAGGGGTGGTGCAGTTTGCAGCGGCCACAGATACGTACTTTTCT 16551 || |||| | || || | | || || |||||| || || || ||||||||||| Sbjct 15374 TCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTTTCC 15433 Query 16552 CTCGGAAACAAGTTTCGCAATCCAACTGTGGCCCCCACCCATGACGTTACGACAGACCGG 16611 || | | || ||| | ||||| || || || || || || || || || || || | Sbjct 15434 CTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGAAAGA 15493 Query 16612 TCTCAAAGACTCACACTGCGTATAGTCCCGGTGGACAGAGAAGACAGCCAGTACACCTAC 16671 || || ||||| | | | | || || | ||| | |||||| | ||||| || | Sbjct 15494 TCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATACTTTT 15553 Query 16672 AAAACCAGGTTTCAACTTTCTGTTGGGGATAACCGAGTTCTGGACATGGCCAGCACTTAC 16731 ||| || | |||||||| | || || |||||| || | | || ||| || | ||| Sbjct 15554 AAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAGTTAT 15613 Query 16732 TTTGACATTCGCGGCCGCCTCGACAGAGGCCCCAGCTTTAAACCCTACTCAGGAACGGCG 16791 ||||| || || | |||||||| ||| |||||||| ||| || || || Sbjct 15614 TTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCACAGCA 15673 Query 16792 TATAACAGCCTGGCGCCG 16809 || || | ||| || ||| Sbjct 15674 TACAATAACCTTGCCCCG 15691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98822635515396