Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000016.1 Length=26263 Score E Sequences producing significant alignments: (Bits) Value seq4931 154 2e-33 >seq4931 Length=27746 Score = 154 bits (170), Expect = 2e-33 Identities = 485/741 (65%), Gaps = 18/741 (2%) Strand=Plus/Plus Query 15043 GATGTAATGGATAATGTTAATCCTTTTAATCATCATAGAAATAGAGGTTTGCAATATAGA 15102 ||||| ||||| | |||||||| ||||||||||| ||||||| |||||| || || Sbjct 16742 GATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGG 16801 Query 15103 AGTCAAATTTTGGGTAATGGTAGAAATG--TCCGTTTTCATATTCAGGTACCTCAGAAAT 15160 ||| | || || |||||| | ||| ||| |||||||||||||| || || || | Sbjct 16802 TCTCAGCTATTAGGAAATGGTCGCTATGCTTCC--TTTCATATTCAGGTTCCGCAAAAGT 16859 Query 15161 TTTTTGCTATTAAGAATCTATTGTTACTTCCTGGAACTTATAGTTATGAATGGTGGTTCA 15220 ||||||| |||| | | | | | || || ||| | || ||||| ||||||| || | Sbjct 16860 TTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTA 16919 Query 15221 GGAAAGATCCAAACTTAGTACTACAGTCTACGTTGGGAAATGATTTAAGAAAAGATGGAG 15280 | |||||| |||| | | | ||| ||| | || |||||| | || | || |||| Sbjct 16920 GAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAG 16979 Query 15281 CAAGCATTCA-GTTTAGCAGTATTAGTCTTTATGCGAGtttttttCCTATG---GATCAC 15336 | || | | ||| ||| ||||| || | ||| | ||| ||||| ||| || || Sbjct 16980 C-GTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAAC 17038 Query 15337 GCTACTTGTAGTGAGCTTATTTTAATGCTTAGAAACGATCAAAATGATCAAACTTTTATG 15396 || ||| || | | | | |||||| | || || || ||||| | || Sbjct 17039 ACTGCTTCTACTCTGGAAACT---ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGC 17095 Query 15397 GATTATATGGGTGCAAAG--AATAATTTGTATTTAGTTCCTGCTAATCAAACTAATGTTC 15454 || ||| | | || | || | | ||| ||||| | ||||||| | || | Sbjct 17096 GACTATCT--TTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGC 17153 Query 15455 AGATTGAAATACCTTCTAGAGCTTGGACAGCATTTAGAGGCTGGAGTTTTAACCGAATTA 15514 || || || | || |||| | || |||||||| ||| | || || | || Sbjct 17154 CTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGG-GCATTTACTAGACTA 17212 Query 15515 AAACTGC-TGAGACACCAGCTGTGTGGTCTACTTATGATCTTAATTTTAAATATTCTGGC 15573 |||| | || |||||| | | | ||| | | ||| | | |||| || || ||| Sbjct 17213 AAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGC 17272 Query 15574 TCAATACCTTATCTAGATGGTACATTTTATCTTTCTCACACTTTTAACTCTATGTCTATT 15633 ||||| || ||| |||| || |||||| | ||||||||| | | || | || Sbjct 17273 TCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATA 17332 Query 15634 TTGTTTGATTCAGCAATAACATGGCCAGGTAATGATAGAATGTTAGTTCCGAAttttttt 15693 ||||||||| || ||| ||||| || ||||| ||| | ||| | || ||| ||| Sbjct 17333 CAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTT 17392 Query 15694 GAAATAAAAAGAGAGATAGATACGGAGGGATACACTACTAGTCAGTCTAATATGACTAAA 15753 | |||||||||||| | || |||| || || | || |||| | || ||||| Sbjct 17393 CACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAG 17452 Query 15754 GATTGGTATTTGATTCAAATG 15774 ||||||||| ||||||||||| Sbjct 17453 GATTGGTATATGATTCAAATG 17473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83859939190134