Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000017.1
Length=36001
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 405 1e-108
>seq4931
Length=27746
Score = 405 bits (448), Expect = 1e-108
Identities = 1162/1773 (66%), Gaps = 53/1773 (3%)
Strand=Plus/Plus
Query 20292 GCCAACCTATGGAGAAATTTCCTCTACTCCAACATTGCACTGTACCTGCCTGACAAGCTA 20351
|||||||| |||| ||||| || || || || || || ||||| ||||| || || |
Sbjct 16559 GCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGATAACTTT 16618
Query 20352 AAATACACTCCTACAAATGTGGAAATATCTCCCAACCCTAATTCATACGATTATATGAAC 20411
||| |||||| ||||||||| | | | | | | ||| | ||| |||||
Sbjct 16619 AAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTATATGCTTACATGAAT 16678
Query 20412 AAGCGAGTGGTGGCTCCCGGGT-TGGTGGATTGCTACATTAACCTTGGAGCGCGTTGGTC 20470
|| | || | |||| |||| || || || ||| | ||| | | |||||
Sbjct 16679 TCTCGCATTCCAGC-CGGGGGTCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTC 16737
Query 20471 ATTGGACTACATGGACAACGTCAACCCCTTTAACCATCACCGCAATGCGGGCCTACGCTA 20530
| | || ||||||| || || || ||||| |||||| | ||| | || | | ||
Sbjct 16738 AATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTA 16797
Query 20531 CCGCTCCATGTTGCTGGGCAACGGTCGCTACGTGCCCTTTCACATCCAGGTTCCTCAGAA 20590
| | || | | | || || |||||||| | ||||||| || |||||||| || ||
Sbjct 16798 CAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAA 16857
Query 20591 GTTTTTTGCCATTAAGAACCTCCTACTCTTGCCGGGCTCATACACCTACGAGTGGAACTT 20650
||||||||| |||| | | || || | ||||| || |||| ||||| ||| ||
Sbjct 16858 GTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTT 16917
Query 20651 CAGGAAAGATGTTAACATGGTCCTGCAAAGCTCCCTAGGAAACGACCTAAGAGTTGACGG 20710
|| |||||||| |||||| | |||| || | || || || || || || | |||||
Sbjct 16918 TAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGG 16977
Query 20711 AGCCAGCATTAA-GTTTGACAGCATTTGCCTCTACGCCACCTTTTTTCCGATGGCCCACA 20769
|| | || ||| |||||||||||| |||| | || || || ||||||||| | || |
Sbjct 16978 AG-CGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATA 17036
Query 20770 ACACCGCCTCAACGCTTGAAGCCATGCTTAGAAACGACACCAACGACCAGTCCTTTAACG 20829
|||| || || || || ||| | |||||| | || || ||||| |||||||| ||
Sbjct 17037 ACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCG 17096
Query 20830 ACTACCTATCCGCCGCCAACATGCTTTACCCCATACCCGCCAACGCCACCAAC-GTGCCC 20888
|||| || ||| || ||||||||||| | || || || | | |||| |||||
Sbjct 17097 ACTATCTTTCCAGCGTTAACATGCTTTATGCTAT-TCCTCCGCATCAAACAACAGTGCCT 17155
Query 20889 ATCTCTATCCCCTCGCGCAACTGGGCGGCTTTCCGAGGCTGGGCCTTTACGCGCCTTAAG 20948
|||||||| || | | || |||||||| || |||| ||||| ||||| | | |||
Sbjct 17156 ATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGAC-TAAA 17214
Query 20949 ACTA-AGGAAACCCCATCCCTGGGTTCCGGCTACGACCCTTACTATACCTACTCTGGCTC 21007
|| | ||||||| ||| || | || || | | ||||| |||| || ||||| |||||
Sbjct 17215 ACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTC 17274
Query 21008 CATACCCTACCTAGACGGAACCTTTTACCTTAATCACACCTTCAAAAAGGTAGCCATCAC 21067
|| || || || | |||||||| | |||||| ||| |||||| |||||
Sbjct 17275 AATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACA 17334
Query 21068 CTTTGACTCTTCTGTTAGCTGGCCTGGCAATGACCGTCTGCTTACCCCCAACGAGTTTGA 21127
||||| ||||| || || |||||||| |||||| | || | | || || || ||| |
Sbjct 17335 GTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCA 17394
Query 21128 GATCAAGCGTTCAGTTGACGGAGAGGGCTACAACGTTGCCCAATGCAACATGACCAAAGA 21187
|| || | || |||| || ||||| ||| | || ||| || || || ||
Sbjct 17395 CATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGA 17454
Query 21188 CTGGTTCTTGGTACAGATGCTAGCCAACTACAACATAGGCTACCAGGGCTTTTATAT-CC 21246
|||| || | || ||||| || ||||||| || || ||||| || ||| | | ||
Sbjct 17455 TTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACC 17514
Query 21247 CAGAAAGCTATAAGGACCGCATGTACTCCTTCTTTAGAAACTTCCAGCCCATGAGCCGTC 21306
|| | | ||||| || | |||| ||||| || ||||| || | |||||| | | |
Sbjct 17515 CACAGA-TTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGAC 17573
Query 21307 AGGTGGTGGACGATACCAAATACAAGGACTACCAACAGGTGGGCATCCTCCACCAGCACA 21366
| || ||||| | || | | || |||| || | | | ||||| |
Sbjct 17574 AAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATA 17633
Query 21367 ATAACTCTGGCTTTGTTGGTTACCTCGCTCCCACCATGCGAGAGGGACAGGCCTACCCCG 21426
|||| || || ||| | | ||| |||| | || || | || |||
Sbjct 17634 ATAATTCAGGTTTTAAAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCT 17693
Query 21427 CCAACTTCCCCTACCCGCTTATAGGCAAGACC--GCGGTTGACAGTATTACCCAGAAAAA 21484
|||| || | |||||| || || ||| | || | | | | ||||| |||| |||
Sbjct 17694 GTAACTGGCCTTTCCCGCTCATCGG--AGAACAGGCAGGTAAAACCATTACTCAGAGAAA 17751
Query 21485 GTTTCTTTGCGACCGCACCCTTTGGCGCATTCCATTCTCCAGTAACTTTATGTCCATGGG 21544
||| | || ||| | || || ||| | ||||| |||||| |||||||||||||||||
Sbjct 17752 ATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGG 17811
Query 21545 TGCACTCACAGACCTGGGCCAAAACCTTCTCTATGCAAACTCCGCCCACGCGCTAGATAT 21604
|||| ||||| ||||| ||||| | || |||||||| || || || || |||| ||
Sbjct 17812 AACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACAT 17871
Query 21605 GACTTTTGAGGTGGATCCCATGGACGAGCCCACCCTTCTTTATG-TTTTGTTTGAAGTCT 21663
||| | || || ||| | ||||| || || || || | ||| | | |||||||| |
Sbjct 17872 GACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC-TCATGATGCTATTTGAAGTAT 17930
Query 21664 TTGACGTGGTCCGTGTGCACCAGCCGCACCGCGGCGTCATCGAGACCGTGTACCTGCGCA 21723
||||| || | | ||||| ||||| || || || ||||| || | || || | |
Sbjct 17931 TTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAA 17990
Query 21724 CGCCCTTCTCGGCTGGCAACGCCACAACATAAAGAAGCAAGCAACATCAACAACAGCTGC 21783
| ||||| ||||| || |||||| |||||||||
Sbjct 17991 CCCCCTTTTCGGCAGGTAACGCCGCAACATAAA--------------------------- 18023
Query 21784 CGCCATGGGCTCCAGTGAGCAGGAACTAAAAGCCATTGTCAAAGATCTTGGTTGTGGACC 21843
||||| || ||| | ||| ||||| ||| || ||| ||| ||| |||
Sbjct 18024 ---TATGGGGACCTCAGAGGACGAAATAAAACGAATTATCTCCGAT-TTGAATGT--ACC 18077
Query 21844 ATATTTTTTGGGCACCTATGACAAGCGCTTCCCAGGCTTTGTTTCCCCA--CACAAGCTC 21901
| ||||||||| |||||||| || ||||| || || || | ||| | ||| | |
Sbjct 18078 TTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTT--TATCCGAAAGGACAGGTTA 18135
Query 21902 GCCTGCGCCATAGTTAACACGGCCGGTCGCGAGACTGGGGGTGTACACTGGATGGCCTTT 21961
||| ||||| || ||||| | |||||| || ||||| || ||||| || |||
Sbjct 18136 TGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTTT 18195
Query 21962 GCCTGGAACCCGCGCTCAAAAACATGCTACCTCTTTGAGCCCTTTGGCTTTTCTGACCAA 22021
|| ||||| || ||||||| ||| | ||||| || || || || || || |||
Sbjct 18196 GCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGATCAA 18255
Query 22022 CGTCTCAAGCAGGTTTACCAGTTTGAGTACGAG 22054
| | || | |||||| | || || || |||
Sbjct 18256 GATTTGAAAAAAGTTTACAACTTCGAATATGAG 18288
Score = 168 bits (186), Expect = 2e-37
Identities = 210/288 (73%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 19856 GCCAAACAGACCCAATTACATCGCTTTTAGGGACAATTTTATTGGCCTTATGTATTACAA 19915
||||||||| || ||||| || | ||||||||| || ||||| || | |||| ||| ||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 19916 CAGCACTGGTAACATGGGTGTCCTTGCTGGACAAGCATCACAGCTAAATGCCGTGGTAGA 19975
||| | | | || ||||||| | || || ||| | |||||||| ||||| || | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 19976 CTTGCAGGACAGAAACACAGAGCTGTCATATCAACTTTTGCTTGATTCTATTGGCGATAG 20035
| | || |||||||| ||||| |||||||||| ||| || | ||| | | ||||||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 20036 AACCAGATACTTTTCCATGTGGAATCAGGCTGTAGACAGCTATGATCCAGATGTCAGAAT 20095
||| |||| | | |||||||||| || || || ||||||||||| ||| ||||
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 20096 CATTGAAAATCATGGAACTGAGGATGAGTTGCCAAATTACTGCTTCCC 20143
||| || ||| |||| || || || | |||||||| ||||| ||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Score = 100 bits (110), Expect = 7e-17
Identities = 126/170 (74%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 26934 CTTAGAAACAGGATTTTTCCCACTCTGTATGCTATATTTCAACAGAGCAGGGGCCAAGAA 26993
|| ||||| | ||| ||||| ||| |||||||||| |||||||| || | || || ||
Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208
Query 26994 ---CAAGAGCTaaaaataaaaaaCAGGTCTCTGCGATCCCTCACCCGCAGCTGCCTGTAT 27050
||| |||||| |||||| | | || | |||| || ||| ||||| || |||
Sbjct 22209 TGTCAAC--CTAAAATTAAAAATC-GCACTTTAAGATCACTTACCAAGAGCTGTCTTTAT 22265
Query 27051 CACAAAAGCGAAGATCAGCTTCGGCGCACGCTGGAAGACGCGGAGGCTCT 27100
||||||| |||||| ||||| | | | || ||||||||||| ||||| ||
Sbjct 22266 CACAAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114992507637358
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