Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000017.1 Length=36001 Score E Sequences producing significant alignments: (Bits) Value seq4931 405 1e-108 >seq4931 Length=27746 Score = 405 bits (448), Expect = 1e-108 Identities = 1162/1773 (66%), Gaps = 53/1773 (3%) Strand=Plus/Plus Query 20292 GCCAACCTATGGAGAAATTTCCTCTACTCCAACATTGCACTGTACCTGCCTGACAAGCTA 20351 |||||||| |||| ||||| || || || || || || ||||| ||||| || || | Sbjct 16559 GCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGATAACTTT 16618 Query 20352 AAATACACTCCTACAAATGTGGAAATATCTCCCAACCCTAATTCATACGATTATATGAAC 20411 ||| |||||| ||||||||| | | | | | | ||| | ||| ||||| Sbjct 16619 AAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTATATGCTTACATGAAT 16678 Query 20412 AAGCGAGTGGTGGCTCCCGGGT-TGGTGGATTGCTACATTAACCTTGGAGCGCGTTGGTC 20470 || | || | |||| |||| || || || ||| | ||| | | ||||| Sbjct 16679 TCTCGCATTCCAGC-CGGGGGTCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTC 16737 Query 20471 ATTGGACTACATGGACAACGTCAACCCCTTTAACCATCACCGCAATGCGGGCCTACGCTA 20530 | | || ||||||| || || || ||||| |||||| | ||| | || | | || Sbjct 16738 AATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTA 16797 Query 20531 CCGCTCCATGTTGCTGGGCAACGGTCGCTACGTGCCCTTTCACATCCAGGTTCCTCAGAA 20590 | | || | | | || || |||||||| | ||||||| || |||||||| || || Sbjct 16798 CAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAA 16857 Query 20591 GTTTTTTGCCATTAAGAACCTCCTACTCTTGCCGGGCTCATACACCTACGAGTGGAACTT 20650 ||||||||| |||| | | || || | ||||| || |||| ||||| ||| || Sbjct 16858 GTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTT 16917 Query 20651 CAGGAAAGATGTTAACATGGTCCTGCAAAGCTCCCTAGGAAACGACCTAAGAGTTGACGG 20710 || |||||||| |||||| | |||| || | || || || || || || | ||||| Sbjct 16918 TAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGG 16977 Query 20711 AGCCAGCATTAA-GTTTGACAGCATTTGCCTCTACGCCACCTTTTTTCCGATGGCCCACA 20769 || | || ||| |||||||||||| |||| | || || || ||||||||| | || | Sbjct 16978 AG-CGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATA 17036 Query 20770 ACACCGCCTCAACGCTTGAAGCCATGCTTAGAAACGACACCAACGACCAGTCCTTTAACG 20829 |||| || || || || ||| | |||||| | || || ||||| |||||||| || Sbjct 17037 ACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCG 17096 Query 20830 ACTACCTATCCGCCGCCAACATGCTTTACCCCATACCCGCCAACGCCACCAAC-GTGCCC 20888 |||| || ||| || ||||||||||| | || || || | | |||| ||||| Sbjct 17097 ACTATCTTTCCAGCGTTAACATGCTTTATGCTAT-TCCTCCGCATCAAACAACAGTGCCT 17155 Query 20889 ATCTCTATCCCCTCGCGCAACTGGGCGGCTTTCCGAGGCTGGGCCTTTACGCGCCTTAAG 20948 |||||||| || | | || |||||||| || |||| ||||| ||||| | | ||| Sbjct 17156 ATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGAC-TAAA 17214 Query 20949 ACTA-AGGAAACCCCATCCCTGGGTTCCGGCTACGACCCTTACTATACCTACTCTGGCTC 21007 || | ||||||| ||| || | || || | | ||||| |||| || ||||| ||||| Sbjct 17215 ACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTC 17274 Query 21008 CATACCCTACCTAGACGGAACCTTTTACCTTAATCACACCTTCAAAAAGGTAGCCATCAC 21067 || || || || | |||||||| | |||||| ||| |||||| ||||| Sbjct 17275 AATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACA 17334 Query 21068 CTTTGACTCTTCTGTTAGCTGGCCTGGCAATGACCGTCTGCTTACCCCCAACGAGTTTGA 21127 ||||| ||||| || || |||||||| |||||| | || | | || || || ||| | Sbjct 17335 GTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCA 17394 Query 21128 GATCAAGCGTTCAGTTGACGGAGAGGGCTACAACGTTGCCCAATGCAACATGACCAAAGA 21187 || || | || |||| || ||||| ||| | || ||| || || || || Sbjct 17395 CATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGA 17454 Query 21188 CTGGTTCTTGGTACAGATGCTAGCCAACTACAACATAGGCTACCAGGGCTTTTATAT-CC 21246 |||| || | || ||||| || ||||||| || || ||||| || ||| | | || Sbjct 17455 TTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACC 17514 Query 21247 CAGAAAGCTATAAGGACCGCATGTACTCCTTCTTTAGAAACTTCCAGCCCATGAGCCGTC 21306 || | | ||||| || | |||| ||||| || ||||| || | |||||| | | | Sbjct 17515 CACAGA-TTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGAC 17573 Query 21307 AGGTGGTGGACGATACCAAATACAAGGACTACCAACAGGTGGGCATCCTCCACCAGCACA 21366 | || ||||| | || | | || |||| || | | | ||||| | Sbjct 17574 AAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATA 17633 Query 21367 ATAACTCTGGCTTTGTTGGTTACCTCGCTCCCACCATGCGAGAGGGACAGGCCTACCCCG 21426 |||| || || ||| | | ||| |||| | || || | || ||| Sbjct 17634 ATAATTCAGGTTTTAAAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCT 17693 Query 21427 CCAACTTCCCCTACCCGCTTATAGGCAAGACC--GCGGTTGACAGTATTACCCAGAAAAA 21484 |||| || | |||||| || || ||| | || | | | | ||||| |||| ||| Sbjct 17694 GTAACTGGCCTTTCCCGCTCATCGG--AGAACAGGCAGGTAAAACCATTACTCAGAGAAA 17751 Query 21485 GTTTCTTTGCGACCGCACCCTTTGGCGCATTCCATTCTCCAGTAACTTTATGTCCATGGG 21544 ||| | || ||| | || || ||| | ||||| |||||| ||||||||||||||||| Sbjct 17752 ATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGG 17811 Query 21545 TGCACTCACAGACCTGGGCCAAAACCTTCTCTATGCAAACTCCGCCCACGCGCTAGATAT 21604 |||| ||||| ||||| ||||| | || |||||||| || || || || |||| || Sbjct 17812 AACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACAT 17871 Query 21605 GACTTTTGAGGTGGATCCCATGGACGAGCCCACCCTTCTTTATG-TTTTGTTTGAAGTCT 21663 ||| | || || ||| | ||||| || || || || | ||| | | |||||||| | Sbjct 17872 GACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC-TCATGATGCTATTTGAAGTAT 17930 Query 21664 TTGACGTGGTCCGTGTGCACCAGCCGCACCGCGGCGTCATCGAGACCGTGTACCTGCGCA 21723 ||||| || | | ||||| ||||| || || || ||||| || | || || | | Sbjct 17931 TTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAA 17990 Query 21724 CGCCCTTCTCGGCTGGCAACGCCACAACATAAAGAAGCAAGCAACATCAACAACAGCTGC 21783 | ||||| ||||| || |||||| ||||||||| Sbjct 17991 CCCCCTTTTCGGCAGGTAACGCCGCAACATAAA--------------------------- 18023 Query 21784 CGCCATGGGCTCCAGTGAGCAGGAACTAAAAGCCATTGTCAAAGATCTTGGTTGTGGACC 21843 ||||| || ||| | ||| ||||| ||| || ||| ||| ||| ||| Sbjct 18024 ---TATGGGGACCTCAGAGGACGAAATAAAACGAATTATCTCCGAT-TTGAATGT--ACC 18077 Query 21844 ATATTTTTTGGGCACCTATGACAAGCGCTTCCCAGGCTTTGTTTCCCCA--CACAAGCTC 21901 | ||||||||| |||||||| || ||||| || || || | ||| | ||| | | Sbjct 18078 TTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTT--TATCCGAAAGGACAGGTTA 18135 Query 21902 GCCTGCGCCATAGTTAACACGGCCGGTCGCGAGACTGGGGGTGTACACTGGATGGCCTTT 21961 ||| ||||| || ||||| | |||||| || ||||| || ||||| || ||| Sbjct 18136 TGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTTT 18195 Query 21962 GCCTGGAACCCGCGCTCAAAAACATGCTACCTCTTTGAGCCCTTTGGCTTTTCTGACCAA 22021 || ||||| || ||||||| ||| | ||||| || || || || || || ||| Sbjct 18196 GCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGATCAA 18255 Query 22022 CGTCTCAAGCAGGTTTACCAGTTTGAGTACGAG 22054 | | || | |||||| | || || || ||| Sbjct 18256 GATTTGAAAAAAGTTTACAACTTCGAATATGAG 18288 Score = 168 bits (186), Expect = 2e-37 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 19856 GCCAAACAGACCCAATTACATCGCTTTTAGGGACAATTTTATTGGCCTTATGTATTACAA 19915 ||||||||| || ||||| || | ||||||||| || ||||| || | |||| ||| || Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 19916 CAGCACTGGTAACATGGGTGTCCTTGCTGGACAAGCATCACAGCTAAATGCCGTGGTAGA 19975 ||| | | | || ||||||| | || || ||| | |||||||| ||||| || | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 19976 CTTGCAGGACAGAAACACAGAGCTGTCATATCAACTTTTGCTTGATTCTATTGGCGATAG 20035 | | || |||||||| ||||| |||||||||| ||| || | ||| | | |||||| Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 20036 AACCAGATACTTTTCCATGTGGAATCAGGCTGTAGACAGCTATGATCCAGATGTCAGAAT 20095 ||| |||| | | |||||||||| || || || ||||||||||| ||| |||| Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 20096 CATTGAAAATCATGGAACTGAGGATGAGTTGCCAAATTACTGCTTCCC 20143 ||| || ||| |||| || || || | |||||||| ||||| || Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Score = 100 bits (110), Expect = 7e-17 Identities = 126/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 26934 CTTAGAAACAGGATTTTTCCCACTCTGTATGCTATATTTCAACAGAGCAGGGGCCAAGAA 26993 || ||||| | ||| ||||| ||| |||||||||| |||||||| || | || || || Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208 Query 26994 ---CAAGAGCTaaaaataaaaaaCAGGTCTCTGCGATCCCTCACCCGCAGCTGCCTGTAT 27050 ||| |||||| |||||| | | || | |||| || ||| ||||| || ||| Sbjct 22209 TGTCAAC--CTAAAATTAAAAATC-GCACTTTAAGATCACTTACCAAGAGCTGTCTTTAT 22265 Query 27051 CACAAAAGCGAAGATCAGCTTCGGCGCACGCTGGAAGACGCGGAGGCTCT 27100 ||||||| |||||| ||||| | | | || ||||||||||| ||||| || Sbjct 22266 CACAAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114992507637358