Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000018.1
Length=35514
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 432 8e-117
>seq4931
Length=27746
Score = 432 bits (478), Expect = 8e-117
Identities = 906/1334 (68%), Gaps = 20/1334 (1%)
Strand=Plus/Plus
Query 20147 TCTGGTCGATTCATACATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGT 20206
|||||| || || |||||||| || |||||||||| | || ||||||| ||
Sbjct 16699 TCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGT 16758
Query 20207 GAATCCATTTAACCACCACCGCAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAA 20266
||||||||||| || ||| | ||| |||| | | ||| |||| ||| | || ||
Sbjct 16759 TAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAA 16818
Query 20267 TGGCCGTTATG-TGCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACC 20325
||| || |||| | |||||| | || || || || ||||| || ||||| | || |
Sbjct 16819 TGGTCGCTATGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTT 16877
Query 20326 TACTTCTTCTACCTGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGATGTGAACATGG 20385
| ||||| ||||| || || |||| || || ||| || ||||| ||||| ||||||
Sbjct 16878 TGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGA 16937
Query 20386 TCCTGCAAAGTTCCCTTGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCA 20445
| |||| ||| | ||||| ||||| || || || || || ||| || ||
Sbjct 16938 TTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACA 16997
Query 20446 GCATCAACCTCTATGCCACCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAG 20505
|||| | ||| | ||| || ||||| || ||| |||| ||||| ||||| ||||| |||
Sbjct 16998 GCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAA 17057
Query 20506 CCATGCTGCGCAACGATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGC--TAA 20563
| ||||| ||||| || || |||||||| ||| |||||| || || |||| |||
Sbjct 17058 CTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTTAA 17115
Query 20564 CATGCTTTACCCCATCCCTGCCAATGCAACCAACA-TTCCAATTTCCATCCCATCTCGCA 20622
||||||||| | || ||| | || ||| ||||| | || || || || ||| | | |
Sbjct 17116 CATGCTTTATGCTATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGA 17174
Query 20623 ACTGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGACTCAAAACCA-AGGAGACTCCATCT 20681
| ||||| ||||| || || ||| | || || ||||| ||||| | |||| || ||| |
Sbjct 17175 ATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACC 17233
Query 20682 CTTGGATCAGGGTTCGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGC 20741
|||| || | || || || ||||| || || || || || || || |||||
Sbjct 17234 ATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCG 17293
Query 20742 ACTTTTTACCTTAAC-CACACTTTCAAGAAGGTCTCCATCATGTTTGACTCCTCAGTCAG 20800
|| ||||| ||| | |||||| ||| ||||| |||| |||||| || ||||| ||
Sbjct 17294 ACCTTTTA-TTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAG 17352
Query 20801 CTGGCCTGGCAATGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTGGA 20860
|||||||| |||||||| || || || ||||| ||| | || || | |||||
Sbjct 17353 TTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGA 17412
Query 20861 TGGGGAAGGATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGAT 20920
| |||||| || || | || ||| || || || || |||| || |||| ||
Sbjct 17413 CGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAAT 17472
Query 20921 GCTTGCCAACTACAACATTGGCTACCAGGGCTTTTACATCCCTGAGGGATACAAGGATCG 20980
||| || ||||||| || || ||||| || ||| || | || | || || ||| |
Sbjct 17473 GCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAG 17532
Query 20981 CATGTACTCCTTTTTCAGAAACTTCCAGCCTATGAGCAGGCAGGTGGTTGATGAGGTTAA 21040
|||| |||||||| ||||| || | || ||| | || || || || ||| | ||
Sbjct 17533 ATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTA- 17591
Query 21041 TTACACTG---ACTACAAAGCCGTCAC-CTTACCATATCAACACAACAACTCTGGCTTTG 21096
| || | | || || |||| | |||| |||||| || || || || || |||
Sbjct 17592 --AGACGGAAAAATATCAACCCGTTGCTCTTA-AATATCAGCATAATAATTCAGGTTTTA 17648
Query 21097 TAGGATACCTTGCGCCTACTATGAGACAAGGGGAACCTTACCCAGCCAATTATCCATACC 21156
| | || || | | ||||||| | ||||| || || | || | ||
Sbjct 17649 AAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCC 17708
Query 21157 CGCTCATCGGAACTACTGCCGTTAAAAGTGTTACCCaaaaaaaGTTCCTGTGCGACAGGA 21216
||||||||||| || | ||||| |||| || | ||| || | || ||||| |
Sbjct 17709 CGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAA 17768
Query 21217 CCATGTGGCGCATACCGTTCTCCAGCAACTTCATGTCCATGGGAGCCCTTACGGACCTGG 21276
| ||||| | || ||||||||| |||||| |||||||||||| | || || || ||||
Sbjct 17769 CACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGG 17828
Query 21277 GACAGAACCTGCTCTATGCCAACTCGGCCCATGCGCTGGACATGACTTTTGAGGTGGATC 21336
|||| || |||| ||||| || || || ||||| | |||||||| | || || |||
Sbjct 17829 GACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATT 17888
Query 21337 CCATGGATGAGCCCACCCTGCTTTATCTTCTTTTCGAAGTCTTCGACGTGGTCAGAGTGC 21396
| ||||| || || || || | || || ||||| || ||| || ||||||||
Sbjct 17889 CAATGGAGGAACCAACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGC 17948
Query 21397 ACCAGCCACACCGCGGCGTCATCGAGGCCGTCTACCTGCGCACACCGTTCTCGGCCGGCA 21456
| ||||| || || || ||||| || | | || || | || || || ||||| || |
Sbjct 17949 ATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTA 18008
Query 21457 ACGCCACCACATAA 21470
||||| | ||||||
Sbjct 18009 ACGCCGCAACATAA 18022
Score = 176 bits (194), Expect = 1e-39
Identities = 219/300 (73%), Gaps = 4/300 (1%)
Strand=Plus/Plus
Query 19583 GCCTAACAGACCCAATTACATTGGCTTCAGGGATAACTTTGTAGGTCTTATGTACTACAA 19642
||| ||||| || ||||| || || || |||||||||||| | || | |||| || ||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 19643 CAGTACTGGAAATATGGGAGTTTTGGCCGGCCAAGCATCACAACTGAATGCAGTGGTTGA 19702
||||| | | ||| |||| || || ||||| ||| | ||||| || ||||| || | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 19703 CTTGCAGGACAGAAACACTGAACTGTCATATCAGCTTTTGCTTGATTCTCTGGGAGACAG 19762
| | || |||||||| || ||| |||||||||||||| || | ||| | | || ||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 19763 AAGCAGATACTTCAGCATGTGGAATCAGGCTGTGGACAGCTATGATCCCGATGTTCGTAT 19822
|| |||| | |||| |||||||||| || ||||| |||||||| || || || ||
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 19823 TATTGAAAATCATGGCGTCGAGGATGAACTGCCTAATTACTGTTTTCC----TCTGGATG 19878
|| || ||| ||| || || || ||||| || ||||| || ||||| ||||||||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443
Score = 118 bits (130), Expect = 2e-22
Identities = 214/311 (69%), Gaps = 4/311 (1%)
Strand=Plus/Plus
Query 4173 ATATCTTTTAGGAGCAGACTAATTGCAACGGGGAGGCCCTTAGTGTAGGTGTTTACAAAT 4232
|||||||||| | || | ||||| | ||| ||||| ||||| || || || | ||||
Sbjct 3679 ATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAAT 3738
Query 4233 CTATTGAGCTGGGACGGGTACATCCGGGGTGAAATTATATGCATTTTGGACTGGATCTTG 4292
|| || ||||| | || | ||| ||| | |||||| ||| | || || ||
Sbjct 3739 CTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTT 3798
Query 4293 AGGTTGGCAATGTTGCCGCCTAGATCCCGTCTCGGGTTCATATTGTGCAGGACCACTAAG 4352
|| ||| || || || | || ||| || |||||||||||| || | ||||| ||
Sbjct 3799 AGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAAC 3858
Query 4353 ACAGTGTATCCGGTGCACTTGGGAAATTTATCATGCAGCTTAGAGGGAAAAGCATGAAAA 4412
| | ||| ||| ||||| |||| |||| ||| || || || ||||| || ||||||
Sbjct 3859 AGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAA 3918
Query 4413 AATTTGG--AGACGCCTTTGTGACCCCCCAGATTCTCCATGCACTCATCCATAATGATAG 4470
||||| | | | | | ||| || || | ||| ||||| |||||||| || || || |
Sbjct 3919 AATTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGG 3976
Query 4471 CGATGGGGCCG 4481
| ||||| |||
Sbjct 3977 CTATGGGTCCG 3987
Score = 118 bits (130), Expect = 2e-22
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 6524 TCATAGGGGTTAAGAGGGGTGCCCCAGGGCATGGGGTGGGTGAGCGCGGAGGCATACATG 6583
||| |||| ||||| || | ||| |||||||||| || || | ||| |||||||||
Sbjct 6033 TCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATT 6092
Query 6584 CCACAGATATCGTATACATAGAGGGGCTCTTCGAGGATGCCGATGTAAGTGGGATAACAG 6643
|| | ||||| || ||||| | || || || | | || ||||||||||| || ||
Sbjct 6093 CCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCAC 6152
Query 6644 CGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGAGTTCATGTGAGGGGGCGAGAAGA 6703
|| ||||||||||||||| ||| ||| | ||||| | || ||||| ||||| ||||||
Sbjct 6153 CGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGA 6212
Score = 82.4 bits (90), Expect = 2e-11
Identities = 128/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 18663 AAGATGGCCACCCCATCGATGATGCCCCAATGGGCATACATGCACATCGCCGGACAGGAT 18722
||||||||||| || |||||| | || |||||| | ||| | || ||||| ||||| |||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 18723 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGTGCAACAGACACCTAC--T 18780
||||| || || | ||| | || || || || | ||||| || || ||| |
Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430
Query 18781 TCAGTATGGGGAACAAGTTTAGAAACCCCACAGTGGCGCCCACCCACGATGTGACCACCG 18840
|| || | | | || |||||||| || || || ||||| || |||||||| || || |
Sbjct 15431 TCCCTAAGCG--ATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGG 15488
Query 18841 A 18841
|
Sbjct 15489 A 15489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113435314099016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |