Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000018.1 Length=35514 Score E Sequences producing significant alignments: (Bits) Value seq4931 432 8e-117 >seq4931 Length=27746 Score = 432 bits (478), Expect = 8e-117 Identities = 906/1334 (68%), Gaps = 20/1334 (1%) Strand=Plus/Plus Query 20147 TCTGGTCGATTCATACATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGT 20206 |||||| || || |||||||| || |||||||||| | || ||||||| || Sbjct 16699 TCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGT 16758 Query 20207 GAATCCATTTAACCACCACCGCAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAA 20266 ||||||||||| || ||| | ||| |||| | | ||| |||| ||| | || || Sbjct 16759 TAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAA 16818 Query 20267 TGGCCGTTATG-TGCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACC 20325 ||| || |||| | |||||| | || || || || ||||| || ||||| | || | Sbjct 16819 TGGTCGCTATGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTT 16877 Query 20326 TACTTCTTCTACCTGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGATGTGAACATGG 20385 | ||||| ||||| || || |||| || || ||| || ||||| ||||| |||||| Sbjct 16878 TGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGA 16937 Query 20386 TCCTGCAAAGTTCCCTTGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCA 20445 | |||| ||| | ||||| ||||| || || || || || ||| || || Sbjct 16938 TTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACA 16997 Query 20446 GCATCAACCTCTATGCCACCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAG 20505 |||| | ||| | ||| || ||||| || ||| |||| ||||| ||||| ||||| ||| Sbjct 16998 GCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAA 17057 Query 20506 CCATGCTGCGCAACGATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGC--TAA 20563 | ||||| ||||| || || |||||||| ||| |||||| || || |||| ||| Sbjct 17058 CTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTTAA 17115 Query 20564 CATGCTTTACCCCATCCCTGCCAATGCAACCAACA-TTCCAATTTCCATCCCATCTCGCA 20622 ||||||||| | || ||| | || ||| ||||| | || || || || ||| | | | Sbjct 17116 CATGCTTTATGCTATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGA 17174 Query 20623 ACTGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGACTCAAAACCA-AGGAGACTCCATCT 20681 | ||||| ||||| || || ||| | || || ||||| ||||| | |||| || ||| | Sbjct 17175 ATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACC 17233 Query 20682 CTTGGATCAGGGTTCGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGC 20741 |||| || | || || || ||||| || || || || || || || ||||| Sbjct 17234 ATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCG 17293 Query 20742 ACTTTTTACCTTAAC-CACACTTTCAAGAAGGTCTCCATCATGTTTGACTCCTCAGTCAG 20800 || ||||| ||| | |||||| ||| ||||| |||| |||||| || ||||| || Sbjct 17294 ACCTTTTA-TTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAG 17352 Query 20801 CTGGCCTGGCAATGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTGGA 20860 |||||||| |||||||| || || || ||||| ||| | || || | ||||| Sbjct 17353 TTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGA 17412 Query 20861 TGGGGAAGGATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGAT 20920 | |||||| || || | || ||| || || || || |||| || |||| || Sbjct 17413 CGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAAT 17472 Query 20921 GCTTGCCAACTACAACATTGGCTACCAGGGCTTTTACATCCCTGAGGGATACAAGGATCG 20980 ||| || ||||||| || || ||||| || ||| || | || | || || ||| | Sbjct 17473 GCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAG 17532 Query 20981 CATGTACTCCTTTTTCAGAAACTTCCAGCCTATGAGCAGGCAGGTGGTTGATGAGGTTAA 21040 |||| |||||||| ||||| || | || ||| | || || || || ||| | || Sbjct 17533 ATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTA- 17591 Query 21041 TTACACTG---ACTACAAAGCCGTCAC-CTTACCATATCAACACAACAACTCTGGCTTTG 21096 | || | | || || |||| | |||| |||||| || || || || || ||| Sbjct 17592 --AGACGGAAAAATATCAACCCGTTGCTCTTA-AATATCAGCATAATAATTCAGGTTTTA 17648 Query 21097 TAGGATACCTTGCGCCTACTATGAGACAAGGGGAACCTTACCCAGCCAATTATCCATACC 21156 | | || || | | ||||||| | ||||| || || | || | || Sbjct 17649 AAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCC 17708 Query 21157 CGCTCATCGGAACTACTGCCGTTAAAAGTGTTACCCaaaaaaaGTTCCTGTGCGACAGGA 21216 ||||||||||| || | ||||| |||| || | ||| || | || ||||| | Sbjct 17709 CGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAA 17768 Query 21217 CCATGTGGCGCATACCGTTCTCCAGCAACTTCATGTCCATGGGAGCCCTTACGGACCTGG 21276 | ||||| | || ||||||||| |||||| |||||||||||| | || || || |||| Sbjct 17769 CACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGG 17828 Query 21277 GACAGAACCTGCTCTATGCCAACTCGGCCCATGCGCTGGACATGACTTTTGAGGTGGATC 21336 |||| || |||| ||||| || || || ||||| | |||||||| | || || ||| Sbjct 17829 GACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATT 17888 Query 21337 CCATGGATGAGCCCACCCTGCTTTATCTTCTTTTCGAAGTCTTCGACGTGGTCAGAGTGC 21396 | ||||| || || || || | || || ||||| || ||| || |||||||| Sbjct 17889 CAATGGAGGAACCAACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGC 17948 Query 21397 ACCAGCCACACCGCGGCGTCATCGAGGCCGTCTACCTGCGCACACCGTTCTCGGCCGGCA 21456 | ||||| || || || ||||| || | | || || | || || || ||||| || | Sbjct 17949 ATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTA 18008 Query 21457 ACGCCACCACATAA 21470 ||||| | |||||| Sbjct 18009 ACGCCGCAACATAA 18022 Score = 176 bits (194), Expect = 1e-39 Identities = 219/300 (73%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 19583 GCCTAACAGACCCAATTACATTGGCTTCAGGGATAACTTTGTAGGTCTTATGTACTACAA 19642 ||| ||||| || ||||| || || || |||||||||||| | || | |||| || || Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 19643 CAGTACTGGAAATATGGGAGTTTTGGCCGGCCAAGCATCACAACTGAATGCAGTGGTTGA 19702 ||||| | | ||| |||| || || ||||| ||| | ||||| || ||||| || | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 19703 CTTGCAGGACAGAAACACTGAACTGTCATATCAGCTTTTGCTTGATTCTCTGGGAGACAG 19762 | | || |||||||| || ||| |||||||||||||| || | ||| | | || || Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 19763 AAGCAGATACTTCAGCATGTGGAATCAGGCTGTGGACAGCTATGATCCCGATGTTCGTAT 19822 || |||| | |||| |||||||||| || ||||| |||||||| || || || || Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 19823 TATTGAAAATCATGGCGTCGAGGATGAACTGCCTAATTACTGTTTTCC----TCTGGATG 19878 || || ||| ||| || || || ||||| || ||||| || ||||| |||||||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443 Score = 118 bits (130), Expect = 2e-22 Identities = 214/311 (69%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 4173 ATATCTTTTAGGAGCAGACTAATTGCAACGGGGAGGCCCTTAGTGTAGGTGTTTACAAAT 4232 |||||||||| | || | ||||| | ||| ||||| ||||| || || || | |||| Sbjct 3679 ATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAAT 3738 Query 4233 CTATTGAGCTGGGACGGGTACATCCGGGGTGAAATTATATGCATTTTGGACTGGATCTTG 4292 || || ||||| | || | ||| ||| | |||||| ||| | || || || Sbjct 3739 CTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTT 3798 Query 4293 AGGTTGGCAATGTTGCCGCCTAGATCCCGTCTCGGGTTCATATTGTGCAGGACCACTAAG 4352 || ||| || || || | || ||| || |||||||||||| || | ||||| || Sbjct 3799 AGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAAC 3858 Query 4353 ACAGTGTATCCGGTGCACTTGGGAAATTTATCATGCAGCTTAGAGGGAAAAGCATGAAAA 4412 | | ||| ||| ||||| |||| |||| ||| || || || ||||| || |||||| Sbjct 3859 AGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAA 3918 Query 4413 AATTTGG--AGACGCCTTTGTGACCCCCCAGATTCTCCATGCACTCATCCATAATGATAG 4470 ||||| | | | | | ||| || || | ||| ||||| |||||||| || || || | Sbjct 3919 AATTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGG 3976 Query 4471 CGATGGGGCCG 4481 | ||||| ||| Sbjct 3977 CTATGGGTCCG 3987 Score = 118 bits (130), Expect = 2e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 6524 TCATAGGGGTTAAGAGGGGTGCCCCAGGGCATGGGGTGGGTGAGCGCGGAGGCATACATG 6583 ||| |||| ||||| || | ||| |||||||||| || || | ||| ||||||||| Sbjct 6033 TCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATT 6092 Query 6584 CCACAGATATCGTATACATAGAGGGGCTCTTCGAGGATGCCGATGTAAGTGGGATAACAG 6643 || | ||||| || ||||| | || || || | | || ||||||||||| || || Sbjct 6093 CCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCAC 6152 Query 6644 CGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGAGTTCATGTGAGGGGGCGAGAAGA 6703 || ||||||||||||||| ||| ||| | ||||| | || ||||| ||||| |||||| Sbjct 6153 CGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGA 6212 Score = 82.4 bits (90), Expect = 2e-11 Identities = 128/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 18663 AAGATGGCCACCCCATCGATGATGCCCCAATGGGCATACATGCACATCGCCGGACAGGAT 18722 ||||||||||| || |||||| | || |||||| | ||| | || ||||| ||||| ||| Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18723 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGTGCAACAGACACCTAC--T 18780 ||||| || || | ||| | || || || || | ||||| || || ||| | Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430 Query 18781 TCAGTATGGGGAACAAGTTTAGAAACCCCACAGTGGCGCCCACCCACGATGTGACCACCG 18840 || || | | | || |||||||| || || || ||||| || |||||||| || || | Sbjct 15431 TCCCTAAGCG--ATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGG 15488 Query 18841 A 18841 | Sbjct 15489 A 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113435314099016