Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000019.1
Length=34794
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 489 3e-134
>seq4931
Length=27746
Score = 489 bits (542), Expect = 3e-134
Identities = 919/1329 (69%), Gaps = 30/1329 (2%)
Strand=Plus/Plus
Query 19792 TCTAGTAGACACCTATGTGAACATTGGTGCCAGGTGGTCTCTGGATGCCATGGACAATGT 19851
||| ||||| ||| | ||||| || |||||||||| | |||| ||||||| ||
Sbjct 16699 TCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGT 16758
Query 19852 CAACCCATTCAACCACCACCGTAACGCTGGCTTGCGTTACCGATCTATGCTTCTGGGTAA 19911
|| ||||| || || ||| | || |||| ||| | ||| | ||| ||| | || ||
Sbjct 16759 TAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAA 16818
Query 19912 CGGACGTTATG-TGCCTTTCCACATACAAGTGCCTCAAAAATTCTTCGCTGTTAAAAACC 19970
|| || |||| | |||||| | || || || || ||||| || || || ||||||
Sbjct 16819 TGGTCGCTATGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTT 16877
Query 19971 TGCTGCTTCTCCCAGGCTCCTACACTTATGAGTGGAACTTTAGGAAGGATGTGAACATGG 20030
|||| || || || || || |||| ||| || ||| ||||| || ||||| ||||||
Sbjct 16878 TGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGA 16937
Query 20031 TTCTACAGAGTTCCCTCGGTAACGACCTGCGGGTAGATGGCGC--CAGCATCAGTTTCAC 20088
|| | |||||| | || || || || ||| ||| || || || ||| | || ||| ||
Sbjct 16938 TTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACA-TTTGAC 16996
Query 20089 GAGCATCAACCTCTATGCTACTTTTTTCCCCATGGCTCACAACACCGCTTCCACCCTTGA 20148
||||| | ||| | ||||||||| || || ||| |||| ||||| ||||| || || ||
Sbjct 16997 -AGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGA 17055
Query 20149 AGCCATGCTGCGGAATGACACCAATGATCAGTCATTCAACGACTACCTATCTGCAGC--T 20206
| | ||||| || ||||| || |||||||| ||| |||||| || || |||| |
Sbjct 17056 AACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTT 17113
Query 20207 AACATGCTCTACCCCATTCCTGCCAATGCAACCAATATTCCC-ATTTCCATTCCTTCTCG 20265
|||||||| || | |||||| | || ||| ||| | | || || || ||||| | |
Sbjct 17114 AACATGCTTTATGCTATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAG 17172
Query 20266 CAACTGGGCGGCTTTCAGAGGCTGGTCATTTACCAGACTGAAAACCAAAG-AAACTCCCT 20324
|| |||||||| || ||||| ||| ||||||| ||||| ||||| | || |||| ||
Sbjct 17173 GAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAA 17231
Query 20325 CTTTGGGGTCTGGATTTGACCCCTACTTTGTCTATTCTGGTTCTATTCCCTACCTGGATG 20384
| | || |||| ||||||||| |||||| || || || || || || || |||||
Sbjct 17232 CCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATG 17291
Query 20385 GTACCTTCTACCTGAACCACACTTTTAAGAAGGTTTCCATCATGTTTGACTCTTCAGTGA 20444
||||| || | |||||| | | ||||| |||| |||||| |||||||| |
Sbjct 17292 CGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAA 17351
Query 20445 GCTGGCCTGGAAATGACAGGTTACTATCTCCTAACGAATTTGAAATAAAGCGCACTGTGG 20504
| ||||||||||||||||| | || ||||| |||||| | ||||| | ||||
Sbjct 17352 GTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGG 17411
Query 20505 ATGGCGAAGGCTACAACGTAGCCCAATGCAACATGACCAAAGACTGGTTCTTGGTACAGA 20564
| | |||||||| ||| | || ||| || || || || |||| || | || |
Sbjct 17412 ACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAA 17471
Query 20565 TGCTCGCCAACTACAACATCGGCTATCAGGGCTTCTACATTCCAGAAGGATACAAAGATC 20624
||||||| ||||||| ||||| || || || || || | || || || ||||||
Sbjct 17472 TGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATA 17531
Query 20625 GCATGTATTCATTTTTCAGAAACTTCCAGCCCATGAGCAGGCAGGTGGTTGAT-GAGGTC 20683
| ||||||| ||||| ||||| || | |||||| | || || || || ||| |||
Sbjct 17532 GATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTA 17591
Query 20684 AATTACAAAGACTTCAAGGCCGTCGCCATACCCTACCAACACAACAACTCTGGCTTTGTG 20743
| ||| | |||| |||| || | || || || || || || || |||
Sbjct 17592 AGACGGAAAAATATCAA-CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAA 17650
Query 20744 GGTTA-CATGGCTCCGACCAT----GCGCCAAGGTCAACCCTATCCCGCTAACTATCCCT 20798
| ||| |||| | ||| ||||| || || |||||| ||||| || |
Sbjct 17651 AACCATTATG-----GACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTT 17705
Query 20799 ATCCACTCATTGGAACAACTGCC--GTAAATAGTGTTACGCAGAAAAAGTTCTTGTGTGA 20856
|| ||||| || | ||| | | ||||| | |||| |||| ||| || || |||||
Sbjct 17706 TCCCGCTCATCGG-AGAACAGGCAGGTAAA-ACCATTACTCAGAGAAAATTTTTATGTGA 17763
Query 20857 CAGAACCATGTGGCGCATACCGTTCTCGAGCAACTTCATGTCTATGGGGGCCCTTACAGA 20916
|||||| ||||| | || |||||||| |||||| ||||| ||||| | || |||||
Sbjct 17764 CAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGA 17823
Query 20917 CTTGGGACAGAATATGCTCTATGCCAACTCAGCTCATGCTCTGGACATGACCTTTGAGGT 20976
||||||| ||| |||| ||||| || |||||||||||| | |||||||| | || ||
Sbjct 17824 TCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGT 17883
Query 20977 GGATCCCATGGATGAGCCCACCCTGCTTTATCTTCTCTTCGAAGTTTTCGACGTGGTCAG 21036
||| | ||||| || || || || | || || ||||| || ||| || |||
Sbjct 17884 AGATTCAATGGAGGAACCAACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAG 17943
Query 21037 AGTGCATCAGCCACACCGCGGCATCATCGAGGCAGTCTACCTGCGTACACCGTTCTCGGC 21096
|||||||||||| || || || |||| || | | || || | || || || |||||
Sbjct 17944 AGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGC 18003
Query 21097 CGGTAACGC 21105
||||||||
Sbjct 18004 AGGTAACGC 18012
Score = 150 bits (166), Expect = 4e-32
Identities = 206/288 (72%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 19219 GCCCAACAGACCCAACTACATTGGCTTCAGAGATAACTTTATTGGACTCATGTACTATAA 19278
||| ||||| || || || || || || || ||||||||||| || | |||| |||||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 19279 CAGTACTGGTAACATGGGGGTGCTGGCTGGTCAAGCGTCTCAGTTAAATGCAGTGGTTGA 19338
||||| | | || |||| || | || |||||| |||| ||| | ||||| || | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 19339 CTTGCAGGACAGAAACACAGAACTTTCTTACCAACTCTTGCTTGACTCTCTGGGCGACAG 19398
| | || |||||||| |||||| | || || || || || | || | | ||| ||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 19399 AACCAGATACTTTAGCATGTGGAATCAGGCTGTGGACAGTTATGATCCTGATGTACGTGT 19458
||| |||| | ||| |||||||||| || ||||| |||||||| || || || |
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 19459 TATTGAAAATCATGGTGTGGAAGATGAACTTCCCAACTATTGTTTTCC 19506
|| || ||| ||| || ||||| |||||||| || ||||| |||||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Score = 138 bits (152), Expect = 3e-28
Identities = 446/678 (66%), Gaps = 32/678 (5%)
Strand=Plus/Plus
Query 6057 ATGCCTTTCATGAGGTTT-TCGTCCATTTGGTCAGAAAACACAAtttttttATTGTCAAG 6115
||| ||||||||| || | || ||||| || | ||||| ||||||||||| || |
Sbjct 5550 ATGTCTTTCATGATGTCACTTGTA-ATTTGATCCGGAAACAGTATTTTTTTATTATCTAA 5608
Query 6116 TTTGGTGGCAAATGATCCATACAGGGCGTTGGATAAAAGTTTGGCAATGGATCGCATGGT 6175
|||||||||| || || ||||| ||||| || || ||||| || ||| |||| ||
Sbjct 5609 CCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGT 5668
Query 6176 TTGGTTCTTTTCCTTGTCCGCGCGCTCTTTGGCGGCGATGTTGAGTTGG-ACATACTCGC 6234
||| | | || |||||| |||||| || || || || ||| | || || || |
Sbjct 5669 GCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTATATT-AGTGGCTACGTATTCTC 5727
Query 6235 GTGCCAGGCACTTCCATTCGGGGAAGATAGTTGTTAAT---TCATCTGGCACGATTCTCA 6291
||||| ||| ||||| | | | ||| | || | | |||||||| || | || |
Sbjct 5728 TTGCCACGCAATTCCACT--GCTCAAATACT-GTAACTCGCTCATCTGGGACCAACCTAA 5784
Query 6292 CTTGCCACCCTCGATTATGCAAGGTAATTAAATCCACACTGGTGGCCACCTCGCCTCGAA 6351
| ||| |||||||||||||| ||||| ||| | ||| || ||||||| |
Sbjct 5785 TCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTA 5844
Query 6352 GGGGTTCATTGGTCCAACAGAGCCTACCTCCTTTCCTAGAACAGAAAGGGGGAAGTGGGT 6411
|||||| ||||| || || | || ||||| || ||||| || || || | |
Sbjct 5845 AATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACAT 5904
Query 6412 CTAGCATAAGTTCATCGGGAGG---GTCTGCATCCATGGTAAAGATTCCCGGAAGTAAAT 6468
||| || ||| |||| ||| ||| ||||| || || || |||| | |
Sbjct 5905 CTA-AGTA--TTCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGG 5961
Query 6469 CCTTATCAAAATAGCTGATGGGAGTGGGGTCA-----TCTAAGGCCATTTGCCATTC--- 6520
| |||||||| || | | |||| | || || |||| || |
Sbjct 5962 CAGGGTCAAAATA------GGAAATTTTGTCACCGGTTGCAAAGCGTTTTG-AATACTGA 6014
Query 6521 TCGAGCTGCCAGTGCGCGCTCATATGGGTTAAGGGGACTGCCCCAGGGCATGGGATGGGT 6580
| ||| |||| | ||| | || ||||| || ||| ||||||||||||| ||
Sbjct 6015 TAGAG-AGCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGT 6073
Query 6581 GAGAGCAGAGGCATACATGCCACAGATGTCATAGACGTAGATGGGATCCTCAAAGATGCC 6640
| || ||||||||| || | || ||||| || || || || |||||||| | ||
Sbjct 6074 TAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACC 6133
Query 6641 TATGTAGGTTGGATAGCATCGCCCCCCTCTGATACTTGCTCGCACATAGTCATATAGTTC 6700
|||||| || || ||||| || ||||||||||| ||| ||| ||| | ||||| | ||
Sbjct 6134 TATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTC 6193
Query 6701 ATGTGATGGCGCTAGCAG 6718
||||| || || || ||
Sbjct 6194 GTGTGACGGGGCCAGAAG 6211
Score = 102 bits (112), Expect = 2e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 18254 AAGATGGCCACCCCATCGATGCTGCCCCAATGGGCATACATGCACATCGCCGGACAGGAT 18313
||||||||||| || |||||||| || |||||| | ||| | || ||||| ||||| |||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 18314 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGCGCCACAGACACCTACTTC 18373
||||| || || | ||| | || || || || |||| || || || |||||
Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430
Query 18374 AATCTGGGAAATAAGTTTAGAAATCCCACCGTAGCGCCGACCCACGATGTGACCACCGA 18432
|| | |||| ||||||||||| || || |||||||| |||||||| || || ||
Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Score = 87.8 bits (96), Expect = 4e-13
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 15082 TTCTACAACGAACAAGCTGTGTACTCCCAGCAGCTCCGCCAGTCCACCTCGCTTACGCAC 15141
|||| |||| || |||||||| || ||| | | | || || |||| || ||
Sbjct 13072 TTCTTTAACGCCCAGGCTGTGTATTCGCAGATGTTAGCGGATTCAACTTCGCAAACACAT 13131
Query 15142 GTCTTCAACCGCTTTCCTGAGAACCAGATTTTAATCCGTCCGCCGGCGCCCACCATTACC 15201
|||||||| | |||||||| || || || ||||||||||| || || ||||| ||| |
Sbjct 13132 GTCTTCAATAGATTTCCTGATAATCAAATCTTAATCCGTCCACCAGCTCCCACAATTTGC 13191
Query 15202 ACCGTCAGTGAAAACGTTCCTGCTCTCACAGATCACGGGAC 15242
|| |||| |||||||| || || | || |||||||| ||
Sbjct 13192 TCCATCAGCGAAAACGTGCCATCTTTGACGGATCACGGAAC 13232
Score = 84.2 bits (92), Expect = 5e-12
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 21223 ACCCTATTTTTTGGGAACCTACGATAAGCGCTTCCCGGGGTTCATGGCCCCCGATAAGCT 21282
||| | ||||||||| ||||| ||||| ||||| |||||||| || || | | |
Sbjct 18075 ACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTATCCGAAAGGACAGGTT 18134
Query 21283 CGCCTGTGCCATTGTAAATACGGCCGGACGTGAGACGGGGGGAGAGCACTGGTTGGCTTT 21342
||||||||||||||| || | || || ||| || | || ||| | || ||
Sbjct 18135 ATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTT 18194
Query 21343 CGGTTGGAACCCACGTTCTAACACCTGCTACCTTTTTGATCCTTTTGGATTCTCGGATGA 21402
| |||||| || | ||| || | ||| | |||||||| || |||||||||||| |
Sbjct 18195 TGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGATCA 18254
Query 21403 TCGTCTCAAACAGATTTACCAGTTTGAATATGAG 21436
| | ||| | ||||| | || |||||||||
Sbjct 18255 AGATTTGAAAAAAGTTTACAACTTCGAATATGAG 18288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 111133097779496
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