Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000020.1 Length=31323 Score E Sequences producing significant alignments: (Bits) Value seq4931 558 7e-155 >seq4931 Length=27746 Score = 558 bits (618), Expect = 7e-155 Identities = 1215/1797 (68%), Gaps = 49/1797 (3%) Strand=Plus/Plus Query 18154 GGAAATGTTGAGGCCATGGAAATCAACCTCAATGCCAACCTCTTCAAAAGCTTCCTTTAC 18213 ||||||||||| ||||||||||||| | |||||||| | || | || || || Sbjct 16526 GGAAATGTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTAT 16585 Query 18214 TCCAATGTGGCCTTATACTTGCCTGATGCCTTTAAATACACACCTGAAAACATTGTG--G 18271 || ||| | || | || |||| ||| ||||||| ||| || | ||| | || | Sbjct 16586 TCTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTG 16645 Query 18272 CCCCTGCCAATGTGAATACCTATGCTTACATGAATGTTAGATTACCCGCCGCCAACCTTA 18331 || | | | | || ||||||||||||||| | | | || |||| || Sbjct 16646 CCGCAGGATCAGCGGCTA--TATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGG 16703 Query 18332 TAGATACCTTTGTAAATATTGGCGCCAGATGGTCACCAGATGTAATGGACACTGTTAATC 18391 |||| | | | || || || |||| |||||| |||||| |||||||| ||||||| Sbjct 16704 TAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATC 16763 Query 18392 CTTTCAACCACCACAGGAATGCAGGACTCCGCTACCGTTCACAACTGCTTGGCAATGGCC 18451 | || || || ||||| ||| | || | | ||| | || || || | || ||||| | Sbjct 16764 CATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTC 16823 Query 18452 GCTATTGCTCGTTCCATATTCAGGTCCCTCAAAAATTTTTTGCAATCAAAAATCTCCTCC 18511 ||||| || || ||||||||||| || ||||| ||||||||| | |||| | | || | Sbjct 16824 GCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTC 16883 Query 18512 TACTGCCTGGAACGTACACGTACGAGTGGTCTTTCAGAAAGGATGTAAACATGATCCTTC 18571 | || || ||| |||||| ||||| |||||||| ||||| |||||||||||||| | | Sbjct 16884 TGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGC 16943 Query 18572 AAAGCAGCTTGGGCAATGACCTCCGAGTGGATGGGGCCACCATCAACA-TTCAGAGCATC 18630 | || | | |||||||| || | | ||| || | | || |||| || | ||||| Sbjct 16944 AGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAG-CGTCAGTAACATTTGACAGCATT 17002 Query 18631 AACCTATATGCAAGCTTTTTCCCAATGGCACACAACACTGCCTCCACTCTGGAAGCCATG 18690 | ||||| ||| | || || || ||| | || |||||||| || ||||||||| | ||| Sbjct 17003 AGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATG 17062 Query 18691 CTGCGCAACGATGTAAATGACCAGTCCTTTGCAGACTACCTGTCTTCTGCCAACATGCTT 18750 || ||||| || || || || |||||||| | ||||| || || | ||||||||| Sbjct 17063 CTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTT 17122 Query 18751 TATCCCATCCCTGC-CAACACTACTAACCTGCCAATCTCCATTCCCGCCAGAAACTGGGC 18809 ||| | || ||| | || || || | |||| ||||| ||||| || || || ||||| Sbjct 17123 TATGCTATTCCTCCGCATCA-AACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGC 17181 Query 18810 GGGATTTAGAGGGTGGAGCTTTACCAGAATTAAGCAACGAGAAACTCCTGCCCTGGGCTC 18869 || |||||||| ||| ||||| ||| | || |||| ||||| || || | ||||| Sbjct 17182 GGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTC 17241 Query 18870 GCCTTATGATCCCTACTTCACTTATTCGGGCAGTATTCCATATCTGGATGCAACTTTTTA 18929 | | ||| || ||||| | || |||||| || || ||| |||||| || ||||| Sbjct 17242 TGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA 17301 Query 18930 CCTCAGCCACACCTTTAGAAGAGTTTCCATCATGTTTGACTCTTCCGTGTCTTGGCCTGG 18989 | ||||| | |||| || |||| |||||| ||||| || ||||||||| Sbjct 17302 TTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGG 17361 Query 18990 CAATGACAGGCTGCTTACCCCCAATGAGTTTGAGATTAAAAGGTATGTAGACGGTGAAGG 19049 |||||||| || | | || ||||| ||| | || ||||| | || |||| ||||| Sbjct 17362 AAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGG 17421 Query 19050 TTACAATGTGGCCCAGTCCAACATGACAAAAGACTGGTTCATGGTTCAAATGCTAGCCCA 19109 || || | ||| || || || || || |||| ||| |||||||||| || || Sbjct 17422 CTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCA 17481 Query 19110 CTACAACATCGGCTACCAAGGCTACCACCTGCCAGAAAGCTACAAGGACAGAATGTACTC 19169 |||||| ||||| |||||||| | ||||| || | || || || ||| |||| || Sbjct 17482 CTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTC 17541 Query 19170 CTTCCTAAGAAACTTTGAGCCCATGTGCAGACAGTTGGTGGA-CGTGGCCAACTATGCTG 19228 ||| ||||||| ||||| |||||||| ||||| | ||||| | ||| || | Sbjct 17542 CTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGG-TAAGACGGAAA 17600 Query 19229 CCTACCAGCCGGTTACCGTGGGCCACCAGCATAACAATTCTGGTTATGCTAGCGCCCTTT 19288 || || || ||| | | | |||||||| ||||| |||| | | || || Sbjct 17601 AATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTT--AAAAACCATTA 17658 Query 19289 CGG--CCTTTAACCCGCGTGAGGGGCACCCATACCCAGCAAACTGGCCTTACCCACTCAT 19346 || ||||| ||| | || || || || || |||||||||| ||| ||||| Sbjct 17659 TGGACCCTTT---GGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCAT 17715 Query 19347 TGGAGCCAATGCAGTACCCACTGTCACCCAGAAAAAGTTCCTCTGCGACAGGTCCCTGTG 19406 |||| | |||| || | || |||| ||| || | || ||||| | ||||| Sbjct 17716 CGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTG 17775 Query 19407 GCGCATCCCATTCTCCTCCAACTTTATGTCTATGGGAACCCTCACTGACCTGGGCCAAAA 19466 | | || || |||||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 17776 GAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAA 17835 Query 19467 CCTGCTGTACTCTAACTCCGCCCACGCCCTTGACATGACTTTTGAGGTTGATGCCATGAA 19526 |||| || | || || || || || | |||||||| | || || ||| | ||| | Sbjct 17836 TTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGA 17895 Query 19527 TGAGCCCACTCTGTTGTACG-TTTTGTTTGAAGTGTTCGACGTG-GCACGCGTCCATCAG 19584 || || ||| | | | | | | |||||||| || ||| || ||| | || |||||| Sbjct 17896 GGAACCAACT-TATCTCATGATGCTATTTGAAGTATTTGACATGTGCA-GAGTGCATCAG 17953 Query 19585 CCCCACCGGGGGGTTATTGAGGTAGGGTACCTCAGAACTCCCTTCTCCGCCGGCAACGCC 19644 || || || || || || || || || || ||||| ||||| || || || |||||| Sbjct 17954 CCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCC 18013 Query 19645 ACCACCTAAGCTAATATGGCGGAAGGAGGGTCCTCAGAAGAAGAGCTGCGAGCCATAGTA 19704 | || || |||||| ||| ||||||| || || | | | | || Sbjct 18014 GCAACATA----AATATG---------GGGACCTCAGAGGACGAAAT--AAAACGAATTA 18058 Query 19705 CATAACTTAGGCGTGTCTCCATTTTTCTTGGGCACCTTTGACAAGAGGTTTCCGGGTTTC 19764 | | | ||| || | ||| ||||| |||| ||| || | |||||||| || Sbjct 18059 TCTCCGATTTGAATGT-ACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTT 18117 Query 19765 ATCTCTTCACAAAGAATGG----CCTGCGCCATAGTAAACACCGCAGGC--CGAGAAACG 19818 ||| | || || || ||| ||||| |||||||||| ||| || ||| | Sbjct 18118 ATC----CGAAAGGACAGGTTATGCTGTGCCATTGTAAACACCG--GGCTTCGCGAAGAG 18171 Query 19819 GGGGGCGTGCACTGGCTGGCCATGGCCTGGAACCCCCGCTCAAAAACGTTTTACATGTTT 19878 || || || || ||| | || | || ||||| ||| ||||| |||||||||||| Sbjct 18172 GGCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACATGTTT 18231 Query 19879 GACCCCTTTGGATTTTCAGACAGTAAGCTCAAGCAAGTGTACAGCTTTGAGTATGAG 19935 || || || ||||| || || | | || |||| |||| ||| || |||||| Sbjct 18232 GATCCATTCGGATTCTCGGATCAAGATTTGAAAAAAGTTTACAACTTCGAATATGAG 18288 Score = 233 bits (258), Expect = 4e-57 Identities = 1736/2752 (63%), Gaps = 134/2752 (5%) Strand=Plus/Plus Query 3724 TGTATACAATCCAATCA-AAGTT-AGTATTGAGGCGGTGGTAGTTAAAAATATCCTTAAG 3781 |||| || ||||||||| ||| | ||| | ||| |||||| ||| ||||| || | Sbjct 3632 TGTACACGATCCAATCATAAGATGAGTGTA-AGGAA-TGGTAGGCAAAGATATCTTTTAA 3689 Query 3782 CAGGAGGGAAATAGCAGTGGGTTGTCCCTTAGTGTAGATGTTAATAAACCTATTAAGTTG 3841 | |||| || || |||| | || ||||| || | |||||||| || || || || Sbjct 3690 TAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTG 3749 Query 3842 GGAAGGATGCACCTTAGGACTGATGATATGCATTTTTGCTTGGATTTTTAAGTTGGCAAT 3901 | || |||| || || || | ||||| ||| ||||| ||||||| ||| || Sbjct 3750 AGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGGATAT 3809 Query 3902 GTTTCCCCCCTGGTCTCGTCTGGGATTCATGTTGTGCAAGACCACTATAACAGAGTAGCC 3961 ||||| | ||| || || ||||| || || || ||||| | | | |||| || Sbjct 3810 ATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAGATAGTACCC 3869 Query 3962 TGTGCACTTGGGAAACCTGTCTAGCAGTTTAGAGGGAAAGGCGTGAAAGAACTTGGCTAT 4021 ||||| |||| | | || | ||||| || ||||| |||||||| || || || || Sbjct 3870 GCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAAT 3929 Query 4022 GCCCCTGTTGCCCCCTAAGTCTTCCATGCACTCATCCATTACAATAGCTAGTGGCCC--T 4079 ||||| || ||||| | |||||| |||||||| || | ||| |||| || || | Sbjct 3930 AGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATGGGTCCGGT 3989 Query 4080 TTAGAAGCGGCCCTTGCAAAAACATTGGTAGGGTTGGTAACATCATAGTTGGCCTCATTG 4139 || | || ||| | |||| ||| | || | | |||||| || | || || Sbjct 3990 TTTG--GCCGCCTGTACAAATTTATTATTTGGATGCCCTAAATCATAATTTTCTTCGTTT 4047 Query 4140 GTGAGTTCTGCATAAGACATTTGCACAAA-CTTGGGCATGATGCTGCCACTCTGAGGAAC 4198 ||| || || || | |||| | || | || | ||| | ||| ||||||| || Sbjct 4048 AAGAGATCCTTGTACGATAGTTGCGCGAATCGAGGAGTTAATG-TACCAGTCTGAGGCAC 4106 Query 4199 -----CACCGTGTTTTCGGGGCCTGCAAGGAAGTTTCCCTCACATATTTGGGTTTCCCAT 4253 |||| | |||| | || | |||||||||| ||||| | || |||| Sbjct 4107 AATTTCACCATTCTTTCC---CATGTTAT--AGTTTCCCTCTATAATTTGTGCTTTCCAT 4161 Query 4254 GCTGCAATTTCCTGGGGAGGAATCATGTCCACCTGGGGGGTGATAAAAAAGACTGTTTCT 4313 | ||||||||| || || |||||||| | | ||||| | ||| || | || || Sbjct 4162 GACATAATTTCCTGTGGGGGGATCATGTCTGCATAAGGGGTTACAAAGAATATAGTCTCC 4221 Query 4314 GGGGCGGGGACTA-TAAGCTGGGCAGACATGAGGTTCCTAAGAAGCTGGGACTTGCCACA 4372 |||||||| || ||| ||| | ||||| || || || | | ||||| || |||| Sbjct 4222 GGGGCGGGATTTAATAATTTGGAC-GACATAAGATTTCTCAATAATTGGGATTTTCCACT 4280 Query 4373 CCCTGTGGGCCCATACACTGCAGCAATAAAGGGTTGCTTGT-AGTAGTTAAGGGAT-GCA 4430 || || || ||||| | | |||| | ||||| | | | | |||| | ||| Sbjct 4281 ACCAGTTGGACCATATATGACCCCAATCACCGGTTGAGTATCACCATTTAAACTACCGCA 4340 Query 4431 CAGCTTCCATCTTT-----ATTAAGGTAC--TTACTGACCTTCATGCAACACTGGGTTAT 4483 || ||||| ||| ||| | | | ||| | | || | |||| || Sbjct 4341 CAA--TCCATATTTCAAACATTTATTTTCATTTAATATCATTTTTTCAAC-------TAG 4391 Query 4484 GCTATCTTGAATATCTAGTAGGTCATTTAACAGACTGTCTCCCCCCATAGAAAGCAGTTC 4543 | || || | || || || ||||| | | ||||| | | |||||| ||||| Sbjct 4392 GGCATTTTCA---TCGGCTAAATCTTTTAATAAGTTTTCTCCAGCGAGAGAAAGAAGTTC 4448 Query 4544 CTCAAAAGAGGCAAAGTTTTTGAGGGGCTTAAGTCCCTC-TGCATATGGCATGTTTGTTA 4602 | | | | | ||| ||| || || || || ||||| || | || ||| ||| ||| Sbjct 4449 GTTTAGACATGAAAAAGATTTTAGTGGTTTTAGACCCTCATGGAAATT-CATATTTTTTA 4507 Query 4603 AGCTTTGCTGAAGAGTTTGCAACCTGTCCCAGAGGCTTTTTAAGTCATCCACTGCAGCTC 4662 | || || | || || ||| ||||||| || | ||| | ||||| | ||||| Sbjct 4508 AACTGGTTTGTAAAGCTTCCAATTTGTCCCATAGATTAGTTACATGTTCCACGGTAGCTC 4567 Query 4663 CATCCAGGTAGTTTCTGTGTTTCTTGGGTTTGGATGCTTGCGGCTGTATGGAATGAGACG 4722 ||||||| || || || || || || |||||||| || || || || |||| Sbjct 4568 CATCCAGCAAGGGTCGGTATTCCTGGGATTTGGATGGTTTTTGCAATAAGGTCTGAGCTC 4627 Query 4723 ATGCATGTCTAG--AGCATGCAG--GGTTTTGTCCTTCCATGGCCTCAGCTTCCTTGTTA 4778 | ||| | || || || || | ||||| |||| |||| | | || || | Sbjct 4628 CACCTCGTCCACCCAGTATAAAGTGGGATCTGTCC----ATGGTCTCACCGTTCTGGTGA 4683 Query 4779 GGGTGGTTTCTGTCACTGTGAAAGGTTGCACGTGGGCCTGCACGCTGGTGAGGGTCCTGC 4838 |||||| ||||||||| ||||| || || ||| ||| | | || || | Sbjct 4684 GGGTGGCTTCTGTCACAGTGAACGGATGAGTTCCGGCTTGCTTGGAAGCAAGTGTTTTCT 4743 Query 4839 GCAGGCTCATCCTGCTGGTTTTGAAGA---CGTCCGAGCCCTGCTGCATGTCAGCATAGT 4895 || |||| ||| || | || | |||| |||||| ||||||| Sbjct 4744 TTAGAGTCATTCTGGACGTCGTAAATCTCTCTTCCGT---CTGCTGGCGAGATGCATAGT 4800 Query 4896 AGCAAGCTTTTAGCACATCATAAGAGAGGGTGGAGGTGGCATGACCTTTGGCCCTGAGCT 4955 | |||||| ||| | |||||||| ||| | | ||| | |||||||||||||| | | Sbjct 4801 AACAAGCTCTTAAAATATCATAAGTGAGAGCTGTAGTGTCGTGACCTTTGGCCCTTAATT 4860 Query 4956 TGCCCT----TGCCCACGTGATGGCACTTAGGGCAGGTGGTGTCCTTGAGAGCATACAAC 5011 | || ||| | | || || ||| ||| | || || |||||||||| | Sbjct 4861 TTCCGGAGGATGCTCTC----TGACAGTTATCGCACCATATTTCTTTTAGAGCATACATC 4916 Query 5012 TTGGGCGCCAGGTACACTGATTCTGAGCTGTAAGCATCC-GATCCACACTTCTCACACTG 5070 || || || | |||| || | || | || || | ||| ||| || || Sbjct 4917 TTTGGAGCTAAAAACACAGACTTTGGGGCATATGCGGGCTGATT-ACAGCGTTCGCATCT 4975 Query 5071 TGTTTCACACTCTACTAGCCAAGTGAGCTCTGGGT--TGCTGGGATCAAAGACTAGCTTG 5128 ||| ||||| ||||||| ||| || | || | |||| |||||||| || || Sbjct 4976 TGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTC--ATCAAAGATTAAATTA 5033 Query 5129 CCTCCAttttttttGAGTCGTTTCTTACCTTTTTCTTCCATCAATTTGTAACCCTCCATG 5188 | |||| ||| |||| | ||||||||| ||||||| | | | |||| | Sbjct 5034 TTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATG-CCCTGTTTC 5092 Query 5189 -GTGGTGAAGAGGCTGTCAGTGTCTCCGTAGACAGATTTTAGGACCCTGTTTTCAAGTGG 5247 || ||| | |||||||| |||||||| | ||||||| | ||| || || Sbjct 5093 TGTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGG 5152 Query 5248 GGTTCCCGCGTCGTTTTCGTAGAGAAACTGAGACCACTCTGAGACAAATGCCCGGGTCCA 5307 |||| || | || | ||| | | ||| || || || || |||||||| Sbjct 5153 TCGTCCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCA 5212 Query 5308 TGCTAGAACAAAGGAGGCAATTTGTGAGGGATATCTGTTATTGGCTATTAGGGGGGTGGA 5367 || |||||||| || || ||||| || || || | |||||| ||||| | |||| | Sbjct 5213 GGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGT 5272 Query 5368 CTTTTCTAAAGTGTGTAAACAAAAGTCATCATCTTCAGCAT-CAATAAACATGATTGGCT 5426 ||||||| | || | || | || | ||| |||| | ||| ||| ||||||||| Sbjct 5273 ATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAG-TGATTGGCT 5331 Query 5427 TATAATGGTATG--ACGTCAT----GCTAAAATTATGCATAAAAGGCG-CTTCGGCGAGG 5479 || | | |||| |||| || | | |||| |||||| || | | || |||| | Sbjct 5332 TAAACTTATATGTCACGTGATCTGTGTCAGAATT-TGCATATAAAGTGTCTATGGCGGGA 5390 Query 5480 GGGTC---TTTAGTTGGATCTTCTTCGCTGCAA--GAAGGCGGTGCCAACTGGCGAACGT 5534 ||| | ||||||||| ||| ||| || || ||||| | | ||||| Sbjct 5391 GGGGCCTTTTTAGTTGGCGGTTC--CGCATCATCGGAGCGCGGTACGTCATCGCGAAGCG 5448 Query 5535 CAGAATTGACAGGTGGGTACGCTACGACAAATTCTGGCATGATTTCTGCACACAAATTGT 5594 || | |||| ||| || |||||||| || | || | | ||| | Sbjct 5449 AAG------CCGGTGAGTAACAGGCGGTGAATTCTGGGATAACACGGGCGCTTAGATTAT 5502 Query 5595 CTGTTTCTATGTATGAGGATGATTTGACTACATAGGC---ACCAGAAGCAATTTCTTTAG 5651 |||| |||||||| ||| | | |||| | || |||| || || ||||| Sbjct 5503 CTGTCTCTATGTAACAGGTGGCGCT---TACAAAAGCTTTACCACTGGCTATGTCTTTCA 5559 Query 5652 CAATGTTTGACTCT--ATTTGATCTGAAAAAACTGtttttttGTTGTCTAGCTTGGTAGC 5709 |||| ||| |||||||| | ||| | | ||||||| || |||| | |||| || Sbjct 5560 TGATGTC--ACTTGTAATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGC 5617 Query 5710 AAAAGACCCATAGAGGGCATTTGACAGCAGCTTAGCAATGCTGCGCATGGTTTGATTTTT 5769 ||| || || || || || ||||||| ||| ||||| ||||| ||| || || | Sbjct 5618 AAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTG 5677 Query 5770 GCTTTTGTCTGCTTCTTCTTTGGCACTGATGTTGAGCTGC-ACATACTCTCTGGCGAGAC 5828 | |||| || || | ||||| || || || || || || || ||||| || | | Sbjct 5678 GTTTTTTTCCGCGGCCTCTTTTGCCGCTATATT-AGTGGCTACGTATTCTCTTGCCACGC 5736 Query 5829 ATTTCCACTCTGGAAACACGGTGGTTCTGGTATCAGGGATGAGGGTAACCTTCCACCCGC 5888 | ||||||| ||| || || || ||| |||| | ||| |||||| || | Sbjct 5737 AATTCCACTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTC 5796 Query 5889 GGTTGTGCAGGGTAATAACATCTATGGAGGTTGCAATCTCC-CCGCGTAGGGGCTCGTTG 5947 | || |||| ||||| |||| ||||| || ||| || | || | || || || Sbjct 5797 GATTATGCAAAGTAATGGCATCGATGGACGT-GCATACTTCGCCTCTTAAATTTTCATTT 5855 Query 5948 GTCCAGCAAAGCCTGCCCCCCTTGCGTGAGCAAAATGGGGGCAGCACGTCCAAAAACTCT 6007 ||||||||||| | || || || | || |||||||| || | || || || | ||| Sbjct 5856 GTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCT 5915 Query 6008 TCTGCTGGTGGGTCAGCATCAATGGTGAAGATGCCCGGAAGAAGGTCCTTATCAAAGTAG 6067 || || || | |||||||||||| | ||| |||| | ||| | ||||| ||| Sbjct 5916 TCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAG 5975 Query 6068 CTAATAGTTTTGT----GATT---TAGCATTTT--TTGCTCATAAGCCTTTATGGCCAGC 6118 || |||||| | || ||| |||| | || ||| | |||| Sbjct 5976 GAAA---TTTTGTCACCGGTTGCAAAGCGTTTTGAATACTGATA------GAGAGCCAAG 6026 Query 6119 GCCCGCTCATAGGGGTTTAGCGGTGAACCGGCGGGAAAAGGGTGTGTAAGGGCACTTGCA 6178 | ||| |||| || || |||| || ||| | || || || | || || ||| Sbjct 6027 TTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCA 6086 Query 6179 TACATGCCACATATGTCATAGACAAACACTGGCTCTTGCAACACTCCAATGTAAGTGGGG 6238 ||||| || | || ||||| ||| | | || || | || || || |||||||||||| Sbjct 6087 TACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGG 6146 Query 6239 TAGCACCTGCCTCCTCTGATGCTAAGCCTTACATACTCATACATTTCATTGGAGGGCGCC 6298 ||||||| || ||||||||||| |||||| | ||||| || || | || || ||| Sbjct 6147 TAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCC 6206 Query 6299 --ATGAGGATGGTACTTAGGTGGTGTGTGTTAGGCTTTTCTGCTTTATACAAGATTTGTT 6356 | ||| || || | || ||| | | ||||| | ||| ||| | ||| | Sbjct 6207 AGAAGAGTATTCGAC--AAATGATGTTTTTCTAACTTTTGAGTCTTAAACACCAGTTGCT 6264 Query 6357 TAAAAATGGCATGGGAGTTGGAGCTGATGGTTGGACGCTGGAAGACGTTAAA 6408 ||||||| ||| || || ||||| || ||||||||||| || || ||||| Sbjct 6265 TAAAAATTGCAAAAGAATTTGAGCTAATTGTTGGACGCTGAAAAACATTAAA 6316 Score = 161 bits (178), Expect = 2e-35 Identities = 266/384 (69%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 16932 GAAGATGGCAACCCCGTCGATGCTGCCACAATGGTCTTACATGCACATTGCTGGCCAGGA 16991 ||||||||| || || |||||||| || |||||||||||| | || || || || || || Sbjct 15310 GAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGA 15369 Query 16992 CGCCGCCGAATACTTGTCTCCCGCCCTGGTTCAGTTTGCCCAAGCAACCAGTTCTTACTT 17051 || | ||||| || ||||| || || ||| ||||| |||||| | ||||| Sbjct 15370 TGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 17052 TAAGTTGGACAACAAGTTCAGAAACCCCACTGTGGCCCCCACCCACGATGTGACCACTGA 17111 | | | | || || ||||| || || || || || || |||||||| || || || Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 17112 GAGGTCGCAGCGCTTGCAGCTGCGCTTTGTGCCAGTCATGCAAGAGGATGGCCAGTACAC 17171 || |||||| | | || | | ||||| |||| |||| ||| ||||| || Sbjct 15490 AAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATAC 15549 Query 17172 TTACAAAACCCGCTTCCAGCTTGCGGTGGGAGACAACAGGGTGCTGGACATGGCCAGTAC 17231 || ||| |||| || || || | || || || ||||| | | || ||| |||| Sbjct 15550 TTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAG 15609 Query 17232 TTACTTCGATATCAGGGGTACCCTAGACAGAGGCCCCTCCTTCAAGCCTTACAGCGGCAC 17291 ||| || ||||| | ||| | |||||||||| ||||| || || |||||||| ||||| Sbjct 15610 TTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCAC 15669 Query 17292 CGCCTACAATGCCCTCGCCCCCAA 17315 || |||||| ||| ||||| || Sbjct 15670 AGCATACAATAACCTTGCCCCGAA 15693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100034496605810