Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000189.1
Length=34094
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 187 5e-43
>seq4931
Length=27746
Score = 187 bits (206), Expect = 5e-43
Identities = 535/808 (66%), Gaps = 15/808 (2%)
Strand=Plus/Plus
Query 20600 TCAACATCGGGGCGCGCTGGTCCCCGGATGTCATGGACAACGTCAACCCCTTCAACCACC 20659
||||||| || | | ||||| ||||| ||||||| || || || || || || |
Sbjct 16716 TCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATC 16775
Query 20660 ACCGCAACTAC-GGCCTGCGCTACCGCTCCCAGCTCCTGGGCAACGGCCGCTACTGCAAG 20718
|| | || ||| || || | ||| | || ||||| | || || || ||||| |||
Sbjct 16776 ACAGAAA-TACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTA-TGCTTC 16833
Query 20719 -TTCCACATCCAGGTGCCGCAAAAGTTCTTTGCCCTCAAGAGCCTGCTGCTCCTGCCGGG 20777
|| || || ||||| ||||||||||| ||||| || || || |||| || || |||||
Sbjct 16834 CTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGG 16893
Query 20778 GGCGACCTACACCTACGAGTGGTCCTTCCGCAAGGACGTCAACATGATCCTCCAGTCCAC 20837
|| |||| ||||| ||||| || | || || || |||||||| | ||| ||
Sbjct 16894 ATCG---TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950
Query 20838 GCTGGGCAACGACCTCCGCGCGGACGGGGCCAAAATCAACATC-GAGAGCGTCAACCTCT 20896
|| ||||| || || | | |||||| || | | ||||| || ||| | | ||| |
Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGT-AACATTTGACAGCATTAGCCTAT 17009
Query 20897 ACGCCAGCTTCTTTCCCATGGCCCACAACACCGCCTCCACCCTGGAGGCCATGCTGCGCA 20956
|| | |||||||| ||| | || ||||| || || || ||||| | ||||| ||||
Sbjct 17010 TTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCA 17069
Query 20957 ACGACACCAACAACCAAACCTTTATTGACTTCCTCTCCTCCGCCAACATGCTCTACCCCA 21016
| || ||| | || |||| |||| || ||| || |||||||| || | |
Sbjct 17070 ATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTA 17129
Query 21017 TCCCGGCCAACGTCAC-CAACC-TGCCCATCTCCATTCCCAGCC-GCAACTGGGCCGCCT 21073
| || | | ||| |||| |||| ||||| ||||| ||| | || ||||| ||||
Sbjct 17130 TTCCTCCGCA--TCAAACAACAGTGCCTATCTCTATTCC-AGCAAGGAATTGGGCGGCCT 17186
Query 21074 TCCGCGGCTGGAGCTTCACGCGGCTGAAGCACAACGAGACCCCCGCCCTGGGCTCGCCCT 21133
| | || ||| || || | || || || | || || || || | ||||| | |
Sbjct 17187 TTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCAT 17246
Query 21134 TCGACCCCTACTTTACCTACTCGGGCTCCATCCCCTACCTGGACGGGACCTTCTACCTGG 21193
| ||||| ||||||| ||||||||||| ||||| || ||| | |||||| || |
Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTAT 17306
Query 21194 GCCACACCTTCCGCCGCATCAGCATCCAGTTCGACTCCTCCGTGGCCTGGCCGGGCAATG 21253
||||| || | | ||| ||||| || || || || ||||| || ||||
Sbjct 17307 CTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATG 17366
Query 21254 ACCGCCTGCTCACTCCCAACGAGTTCGAGGTCAAGCGCACCGTGGACGGGGAGGGCTACA 21313
|| | || | | || || || || | | || | ||||||| ||| ||||| |
Sbjct 17367 ACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATA 17426
Query 21314 CGGTGGCCCAGACCAACATGACCAAAGACTGGTTCCTGGTGCAGATGCTCGCCCACTACA 21373
| |||| || || || || || |||| || | || |||||||| |||||||
Sbjct 17427 ACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACA 17486
Query 21374 ACATCGGCTACCAGGGATACCACCTGCC 21401
| ||||| ||||| || | ||||| ||
Sbjct 17487 ATATCGGATACCAAGGTTTTCACCTACC 17514
Score = 156 bits (172), Expect = 9e-34
Identities = 245/348 (70%), Gaps = 6/348 (2%)
Strand=Plus/Plus
Query 21571 GGGCACCCATACCCCGCCAACTGGCCCTACCCGCTCATCGGCGAAGACGCCGTGCAGACC 21630
|| || || || ||| |||||||| | |||||||||||| ||| | || | | |||
Sbjct 17678 GGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACC 17737
Query 21631 GTGACCCAGCGCAAGTTCCTCTGCGACCGCACGCTCTGGCGCATCCCCTTCTCCTCCAAC 21690
| || ||| | || || | || ||| | || || ||| | || || ||||||||||||
Sbjct 17738 ATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797
Query 21691 TTCATGTCCATGGGCACCCTCACCGACCTGGGCCAGAACCTCCTCTACGCCAACTCGGCC 21750
|| ||||||||||| || || || || ||||| || || | || || || || || ||
Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857
Query 21751 CACGCCCTCGACATGACCTTCGAGGTCGACGCCATGGATGAACCCAC---CCTCTTGTAT 21807
|| || | |||||||| |||| || || | ||||| ||||| || ||| || ||
Sbjct 17858 CATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTCATG-AT 17916
Query 21808 GTTCTGTTCGAGGTCTTTGACGTCTGCGGCGTGCACCAGCCGCACCGAGGCGTCATCGAG 21867
| || || || || |||||| | ||| | ||||| ||||| || ||||| ||||| ||
Sbjct 17917 G--CTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAA 17974
Query 21868 GCCGTCTACCTGCGCACGCCCTTCTCCGCCGGGAACGCCACCACCTAA 21915
| | || || | || ||||| || || || |||||| | || |||
Sbjct 17975 GTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Score = 114 bits (126), Expect = 3e-21
Identities = 200/291 (69%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 19986 CGCTCCAAACAGGGCCAATTACATCGGCTTCAGGGACAACTTTATCGGGCTGTTGTACTA 20045
||| ||||||||| | ||||| || || || ||||| |||||||||||| | ||| ||
Sbjct 16141 CGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTA 16200
Query 20046 CAACAGCAATGGCAACCAGGGCATGCTAGCCGGTCAGGCCTCTCAGCTCAACGCGGTGGT 20105
||||| ||| |||| ||| | |||||||||| | || ||||| || || || |
Sbjct 16201 TAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCAT 16260
Query 20106 CGACCTGCAGGACAGGAATACCGAACTCAGCTACCAGCTCTTCCTCGATAGCCTCTATGA 20165
|||||| || ||||| ||||| ||| | || ||||| | | |||| | | ||
Sbjct 16261 CGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGA 16320
Query 20166 CAGGTCGAGGTACTTTAGCCTGTGGAACCAGGCCATCGATTCTTATGACAAGGATGTGCG 20225
|| | | || | ||| ||||||| || ||| | ||||| ||||| || || ||
Sbjct 16321 TAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCG 16380
Query 20226 TGTGCTGGAAAACAATGGCGTGGAGGACGAGATGCCCAACTTTTGCTTTCC 20276
| | || || | ||| || || ||||| | || || | |||||||||
Sbjct 16381 AATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 108894831913296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |