Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000189.1 Length=34094 Score E Sequences producing significant alignments: (Bits) Value seq4931 187 5e-43 >seq4931 Length=27746 Score = 187 bits (206), Expect = 5e-43 Identities = 535/808 (66%), Gaps = 15/808 (2%) Strand=Plus/Plus Query 20600 TCAACATCGGGGCGCGCTGGTCCCCGGATGTCATGGACAACGTCAACCCCTTCAACCACC 20659 ||||||| || | | ||||| ||||| ||||||| || || || || || || | Sbjct 16716 TCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATC 16775 Query 20660 ACCGCAACTAC-GGCCTGCGCTACCGCTCCCAGCTCCTGGGCAACGGCCGCTACTGCAAG 20718 || | || ||| || || | ||| | || ||||| | || || || ||||| ||| Sbjct 16776 ACAGAAA-TACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTA-TGCTTC 16833 Query 20719 -TTCCACATCCAGGTGCCGCAAAAGTTCTTTGCCCTCAAGAGCCTGCTGCTCCTGCCGGG 20777 || || || ||||| ||||||||||| ||||| || || || |||| || || ||||| Sbjct 16834 CTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGG 16893 Query 20778 GGCGACCTACACCTACGAGTGGTCCTTCCGCAAGGACGTCAACATGATCCTCCAGTCCAC 20837 || |||| ||||| ||||| || | || || || |||||||| | ||| || Sbjct 16894 ATCG---TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950 Query 20838 GCTGGGCAACGACCTCCGCGCGGACGGGGCCAAAATCAACATC-GAGAGCGTCAACCTCT 20896 || ||||| || || | | |||||| || | | ||||| || ||| | | ||| | Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGT-AACATTTGACAGCATTAGCCTAT 17009 Query 20897 ACGCCAGCTTCTTTCCCATGGCCCACAACACCGCCTCCACCCTGGAGGCCATGCTGCGCA 20956 || | |||||||| ||| | || ||||| || || || ||||| | ||||| |||| Sbjct 17010 TTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCA 17069 Query 20957 ACGACACCAACAACCAAACCTTTATTGACTTCCTCTCCTCCGCCAACATGCTCTACCCCA 21016 | || ||| | || |||| |||| || ||| || |||||||| || | | Sbjct 17070 ATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTA 17129 Query 21017 TCCCGGCCAACGTCAC-CAACC-TGCCCATCTCCATTCCCAGCC-GCAACTGGGCCGCCT 21073 | || | | ||| |||| |||| ||||| ||||| ||| | || ||||| |||| Sbjct 17130 TTCCTCCGCA--TCAAACAACAGTGCCTATCTCTATTCC-AGCAAGGAATTGGGCGGCCT 17186 Query 21074 TCCGCGGCTGGAGCTTCACGCGGCTGAAGCACAACGAGACCCCCGCCCTGGGCTCGCCCT 21133 | | || ||| || || | || || || | || || || || | ||||| | | Sbjct 17187 TTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCAT 17246 Query 21134 TCGACCCCTACTTTACCTACTCGGGCTCCATCCCCTACCTGGACGGGACCTTCTACCTGG 21193 | ||||| ||||||| ||||||||||| ||||| || ||| | |||||| || | Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTAT 17306 Query 21194 GCCACACCTTCCGCCGCATCAGCATCCAGTTCGACTCCTCCGTGGCCTGGCCGGGCAATG 21253 ||||| || | | ||| ||||| || || || || ||||| || |||| Sbjct 17307 CTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATG 17366 Query 21254 ACCGCCTGCTCACTCCCAACGAGTTCGAGGTCAAGCGCACCGTGGACGGGGAGGGCTACA 21313 || | || | | || || || || | | || | ||||||| ||| ||||| | Sbjct 17367 ACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATA 17426 Query 21314 CGGTGGCCCAGACCAACATGACCAAAGACTGGTTCCTGGTGCAGATGCTCGCCCACTACA 21373 | |||| || || || || || |||| || | || |||||||| ||||||| Sbjct 17427 ACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACA 17486 Query 21374 ACATCGGCTACCAGGGATACCACCTGCC 21401 | ||||| ||||| || | ||||| || Sbjct 17487 ATATCGGATACCAAGGTTTTCACCTACC 17514 Score = 156 bits (172), Expect = 9e-34 Identities = 245/348 (70%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 21571 GGGCACCCATACCCCGCCAACTGGCCCTACCCGCTCATCGGCGAAGACGCCGTGCAGACC 21630 || || || || ||| |||||||| | |||||||||||| ||| | || | | ||| Sbjct 17678 GGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACC 17737 Query 21631 GTGACCCAGCGCAAGTTCCTCTGCGACCGCACGCTCTGGCGCATCCCCTTCTCCTCCAAC 21690 | || ||| | || || | || ||| | || || ||| | || || |||||||||||| Sbjct 17738 ATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797 Query 21691 TTCATGTCCATGGGCACCCTCACCGACCTGGGCCAGAACCTCCTCTACGCCAACTCGGCC 21750 || ||||||||||| || || || || ||||| || || | || || || || || || Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857 Query 21751 CACGCCCTCGACATGACCTTCGAGGTCGACGCCATGGATGAACCCAC---CCTCTTGTAT 21807 || || | |||||||| |||| || || | ||||| ||||| || ||| || || Sbjct 17858 CATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTCATG-AT 17916 Query 21808 GTTCTGTTCGAGGTCTTTGACGTCTGCGGCGTGCACCAGCCGCACCGAGGCGTCATCGAG 21867 | || || || || |||||| | ||| | ||||| ||||| || ||||| ||||| || Sbjct 17917 G--CTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAA 17974 Query 21868 GCCGTCTACCTGCGCACGCCCTTCTCCGCCGGGAACGCCACCACCTAA 21915 | | || || | || ||||| || || || |||||| | || ||| Sbjct 17975 GTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 114 bits (126), Expect = 3e-21 Identities = 200/291 (69%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 19986 CGCTCCAAACAGGGCCAATTACATCGGCTTCAGGGACAACTTTATCGGGCTGTTGTACTA 20045 ||| ||||||||| | ||||| || || || ||||| |||||||||||| | ||| || Sbjct 16141 CGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTA 16200 Query 20046 CAACAGCAATGGCAACCAGGGCATGCTAGCCGGTCAGGCCTCTCAGCTCAACGCGGTGGT 20105 ||||| ||| |||| ||| | |||||||||| | || ||||| || || || | Sbjct 16201 TAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCAT 16260 Query 20106 CGACCTGCAGGACAGGAATACCGAACTCAGCTACCAGCTCTTCCTCGATAGCCTCTATGA 20165 |||||| || ||||| ||||| ||| | || ||||| | | |||| | | || Sbjct 16261 CGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGA 16320 Query 20166 CAGGTCGAGGTACTTTAGCCTGTGGAACCAGGCCATCGATTCTTATGACAAGGATGTGCG 20225 || | | || | ||| ||||||| || ||| | ||||| ||||| || || || Sbjct 16321 TAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCG 16380 Query 20226 TGTGCTGGAAAACAATGGCGTGGAGGACGAGATGCCCAACTTTTGCTTTCC 20276 | | || || | ||| || || ||||| | || || | ||||||||| Sbjct 16381 AATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108894831913296