Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AC_000190.1 Length=33501 Score E Sequences producing significant alignments: (Bits) Value seq4931 572 4e-159 >seq4931 Length=27746 Score = 572 bits (634), Expect = 4e-159 Identities = 1388/2087 (67%), Gaps = 42/2087 (2%) Strand=Plus/Plus Query 16828 CTCGGTCAGCAATCTGCCCCAAATCGACCCAACTACATTGGTTTCCGAGACAACTTTATC 16887 |||| ||||||| || ||||| | || || || || ||||| | || ||||||||| Sbjct 16127 CTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATC 16186 Query 16888 GGTCTCATGTACTACAACAGTAACGGCAATCTGGGCGTGTTGGCCGGGCAAGCTTCTCAG 16947 || | |||| || |||||||| ||||| |||| || || ||||| ||| | || ||| Sbjct 16187 GGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAG 16246 Query 16948 CTCAATGCGGTCGTCGACCTGCAAGACCGCAATACCGAGTTGTCTTACCAACTGATGCTG 17007 || ||||| ||| ||||||| |||||| | ||||| || ||||| || || || ||| | Sbjct 16247 CTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTA 16306 Query 17008 GACAGTTTGGTGGACCGGTCGCGCTACTTTAGCATGTGGAACCAAGCCGTCGATAGTTAT 17067 || | ||| || | | || || | ||| ||||||| |||||||| ||| ||| Sbjct 16307 GATAATTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATAT 16366 Query 17068 GACCCAGACGTGCGTGTTCTGGAGAACAACGGAGTGGAAGACGAACTGCCAAATTATTGC 17127 || ||||| || || | | || || | ||||| ||||||||||| |||||||||||| Sbjct 16367 GATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGC 16426 Query 17128 TTTCCGCTAAGCGGCGTCGGTCTGACCGAATTG--TACACCGGGGTGGCCAGAAACGG-- 17183 |||||| || | | | ||| | |||| || || | || ||| || Sbjct 16427 TTTCCGTTATCTG--GATGTTCT---CCTATTGATTATACTGCTGTTAATCAAAATGGAC 16481 Query 17184 GGGCAATTGGGCCGCCGACAATGACGCCGCAGCCAG-CCAAATCGCCGTCGGCAATGTGC 17242 ||||| | ||||| || | || || | | || | | || ||||| Sbjct 16482 AAGCAAT-----CAATAACAATAACCCTGC-GCAGGTTCTTATAGGCAAAGGAAATGTTG 16535 Query 17243 ACGCCATGGAAATTAACATCGCCGCCAACCTGTGGCGCGGTTTCCTGTATTCTAACGTGG 17302 | ||||||||| ||||| || |||||||||||| ||| ||||||||||| | | Sbjct 16536 AATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCG 16595 Query 17303 CGCTCTACCTTCCCGACGAGTACAAATATACTCCGATTAACGTGACCTTGCCGGA-AAAC 17361 |||| || || ||||| | | ||| ||||| || ||| |||||| | | | Sbjct 16596 CGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATC 16655 Query 17362 A----CTAACACTTACGCCTACATGAACGGCCGTGTTCCGGCCAATAATCTGGTAGATTC 17417 | ||| || || |||||||| || |||| ||| ||||||||| Sbjct 16656 AGCGGCTA-----TATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGA 16710 Query 17418 CTTTGTCAATGTGGGCGCCAGGTGGTCTCCGGACGTCATGGATAACGTGAATCCCTTTAA 17477 | | |||| | || |||||||||| || || ||||| | || ||||| ||||| Sbjct 16711 TTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAA 16770 Query 17478 CCATCACCGAAACGCCGGACTGCGTTACCGGTCTCAGCTGTTAGGCAACGGGCGTTACTG 17537 |||||| |||| | || || | ||| |||||||||| ||||| || || || || Sbjct 16771 TCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGC 16830 Query 17538 TCGCTTCCACATCCAAGTGCCCCAGAAATTCTTCGCCATCAAAAACCTGCTACTCTTGCC 17597 | ||| || || || || || || || || || || | |||| |||| || | || Sbjct 16831 TTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACC 16890 Query 17598 CGGCACGTACACGTACGAGTGGTCTTTCAGAAAAGACGTCAACATGATTCTGCAGAGCAC 17657 || |||||| ||||| |||||||| |||||||| || ||||||||| ||||||| || Sbjct 16891 GGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950 Query 17658 GCTCGGCAACGACTTGCGCGTTGACGGCGCCTCCATTAACA-TCGAAAGCGTAAACCTGT 17716 || ||||| || || | | ||||| || | || ||||| | || ||| | | ||| | Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGT-CAGTAACATTTGACAGCATTAGCCTAT 17009 Query 17717 ACGCCAGCTTTTTCCCCATGTCCCACAATACGGCCTCCACTTTGGAGGCCATGCTCCGTA 17776 || | || || || ||||| || || || || || ||| |||| | ||||| || | Sbjct 17010 TTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCA 17069 Query 17777 ACGACACCAACGACCAGTGTTTCACCGACTA-CTTGTCGGCGGCCAACATGCTCTACCCC 17835 | || ||||| |||| ||| |||||| ||| | || | |||||||| || | Sbjct 17070 ATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCT 17128 Query 17836 AT--CGCCGNNNNNNNNNNNNNNNTGCCCATTTCCATTCCCTCGCGTAACTGGGCGGCGT 17893 || | ||| |||| || || ||||| | | || |||||||| | Sbjct 17129 ATTCCTCCG--CATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCT 17186 Query 17894 TTAGAGGCTGGAGTTTTACTCGCCTCAAGCAAAAGGAAACCCCGGCCCTGGGATCGCCAT 17953 ||||||| ||| |||||| | || || ||| ||||||| || || | || || ||| Sbjct 17187 TTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCAT 17246 Query 17954 ACGATCCCTATTTCACCTACTCGGGGTCTATTCCCTATCTCGACGGCACTTTTTACCTCA 18013 || || || || | |||||||| || || || ||| || | || ||||| | Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTAT 17306 Query 18014 ATCACACTTTCCGCCGCGTCGCCATTCAGTTCGATTCGTCGGTCAGCTGGCCCGGTAACG 18073 ||||||| || | || ||||| ||||| ||||| || || || ||||| || || | Sbjct 17307 CTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATG 17366 Query 18074 ACCGCCTGCTGACTCCCAACGAATTTGAGATTAAGCGCGCAGTGGACGGGGAAGGCTACT 18133 || | || | | || || |||||| | || || | | ||||||| ||||||||| Sbjct 17367 ACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATA 17426 Query 18134 CTACGGCCCAGAGCACCATCACTAAAGATTGGTTTTTGACGCAAATGCTGGCCAACTATA 18193 || | ||||||| || ||||| ||||||| | ||| |||||||| || |||| | Sbjct 17427 ACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACA 17486 Query 18194 ATATCGGCTACCAAGGGTACTATCTGCCCGACGGCTACAAAGACCGGCTGTATTCGTTCT 18253 ||||||| |||||||| | | || ||| | || ||||| | ||||||| || | Sbjct 17487 ATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTT 17546 Query 18254 TGCGAAACTTCCAGCCGATGTGCCGCCAGGTGGTAGACGAGGCTAATTACGCCAACTATA 18313 | |||| || | || ||||| | || || || || | ||| | || ||| Sbjct 17547 TAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATC 17606 Query 18314 AGGCGGTCTCCATTACTCATCAACACAATAACTCTGGGTTTACCGGCTTTGCTTCCGCCG 18373 | | || | ||| |||| || ||||| || || |||| | || | Sbjct 17607 AACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAAC---CATTATGGAC 17663 Query 18374 CCGTGCCCCGAGAAGGCCATCCCTACCCGGCCAATTGGCCCTATCCCCTCATCGGCGATA 18433 || | ||| |||||||||| || || || ||||| | || |||||||| || Sbjct 17664 CCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAAC 17723 Query 18434 CGGCCGTGCCCTCCGTCACCCAGCGTAAATTTTTGTGCGACCGCACGCTGTGGCGCATTC 18493 ||| | || | || ||| | |||||||| || ||| | || |||||| | |||| Sbjct 17724 AGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTC 17783 Query 18494 CCTTTTCCTCTAACTTTATGTCTATGGGCACTCTGAGCGACTTGGGTCAGAACCTGCTGT 18553 | || ||||| ||||||||||| ||||| || || | || |||| || || |||| | Sbjct 17784 CGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTAT 17843 Query 18554 ACGCCAACTCGGCTCATGCTTTAGATATGATTTTTGAAGTGGACCCCATGCCAGAACCCA 18613 | || || || |||||||||||||| |||| | ||||| || | ||| ||||| | Sbjct 17844 ATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAA 17903 Query 18614 CCCTCCTCTATG-TTTTGTTTGAAGTCTTCGACGTCGCTCGAGTGCATCAGCCGCATAGA 18672 | ||| ||| | | |||||||| || ||| | ||||||||||||| || || Sbjct 17904 CTTATCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGA 17962 Query 18673 GGTGTCATTGAGGTGGTGTACTTGAGGACCCCCTTCTCCGCCGGCAACGCCACCACATAA 18732 |||||||| || || | || | || |||||||| || || || |||||| | |||||| Sbjct 17963 GGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Query 18733 AAATGGGCAGCAGCGAGGAAGAGCTGCGGGCTTTGGTACGCGACTTAAATATAGAGCCCT 18792 | ||||| | | ||||| || | | | ||| || ||| || || | Sbjct 18023 ATATGGGGACCTCAGAGGACGAAATAAAACGAATTATCTCCGATTTGAATGTA---CCTT 18079 Query 18793 ATTTTTTGGGCACCTTTGATAAAAGGTTTCCGGGGTTCATTCGCGCCGAACAAATGTGTT 18852 ||||||||| |||| ||||||| | ||||||||||| || || || | || | Sbjct 18080 GTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTATCCGAAAGGACAGGTTATGCT 18139 Query 18853 GTGCCATCGTGAACACGGCCGGTCGTGAAACCGGCGGAGTGCACTGG 18899 ||||||| || ||||| | ||| ||| ||||| || || ||| Sbjct 18140 GTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGG 18186 Score = 187 bits (206), Expect = 5e-43 Identities = 478/718 (67%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 12026 CTGAGGGGAGAAATAGTATTCGTTATTCTCAGCTTCCTCCTTTATACGATCTGACCAAGA 12085 ||||||| |||||||| || |||||| | | ||| | ||| ||||| || || | Sbjct 12044 CTGAGGGAAGAAATAGCATAGTTTATTCACCTTTACCTACGTTACACGATACAACGAAAA 12103 Query 12086 TTTACTTGATCGACAACAAGTCGGCCGACATCGCTTCTCTAAACTACCAAAACGATCACA 12145 ||||||| ||||| ||||| | |||||||| |||| ||||| || || |||||||| | Sbjct 12104 TTTACTTTATCGATAACAAAGCATCCGACATCTCTTCCCTAAATTATCAGAACGATCATA 12163 Query 12146 GCAACTTTCTGACCAGCGTAGTCCAAAATAGCGACTTTACGCCTCAAGAGGCCA--GCAC 12203 | | | | || ||| | |||||| || |||| || | || | || | || Sbjct 12164 GTTTATATTTAACATCCGTCATTCAAAATCCGGATTTTAATCCCCTGGAAGGCACGGGAC 12223 Query 12204 -TCAGACCATTAACTTTGACGATCGATCCAGATGGGGTGGGGATTTTAAGACGATCTTGC 12262 ||||| | || || || || |||| ||||||||||| |||| || || || ||| Sbjct 12224 ATCAGA---TAAAATTAGATGAAAGATCTAGATGGGGTGGTAATTTAAAAACCATTCTGC 12280 Query 12263 ACATGAACATTCCCAACGTGACCGAGTTTATGTTTAGTAATTCTTTTGGGGCTCGTCTCA 12322 | ||||| || || | ||||||| |||||||||||||||||| | | | | Sbjct 12281 ATTCAAACATACCAAATATAACCGAGTACATGTTTAGTAATTCTTTTAGAGTTAAGATAC 12340 Query 12323 TGACATCAAAAGTCAATGGTGTGCCT---ACTTACGAATGGGTGACTTTGACCATTCCCG 12379 || |||||| || | || | | || |||||||||||| | ||||| |||| Sbjct 12341 CCACTCAAAAAGT---TGACGGGCATTTAAGATATGAATGGGTGACTCTAACCATACCCG 12397 Query 12380 AGGGAAACTATTCGGACATCATGGTCATGGATCTCATGAACAATGCCGTGCTGGAACACT 12439 | ||||| | |||||| || ||||| || ||| | |||||| ||||| | | || | Sbjct 12398 AAGGAAATTTTTCGGAGATTATGGTTATAGATTTGATGAACGATGCCATTATCTCTCATT 12457 Query 12440 ATTTG-CGAGTAGGCAGAAACAACGGGGTGCCGGAAGAGGACATCGGGGTCAAATTTGAT 12498 ||||| | | | ||||| ||| || ||||| || || || || || | || Sbjct 12458 ATTTGTCTAAT-GGCAGGTTACGCGGTGTTAATGAAGATGAAATAGGTGTTAAGCTGGAC 12516 Query 12499 ACGCGCAACTTTCGCTTAGGTTGGGACCCAGAAACTAAGCTAGTGATGCCCGGCTCGTAC 12558 || | || ||| | |||| || || | |||| || | ||||||||| ||| Sbjct 12517 ACTAGAAATTTTAAAATGGGTTATGATCCCTATTATAAGTTAATCATGCCCGGCATGTAT 12576 Query 12559 ACGTACGAGGCGTTCCATCCCGACATTGTCTTGCTGCCCGGCTGCGGCGTTGATTTTACC 12618 || || || || ||||||||| | |||| || ||| | ||||||||| | Sbjct 12577 CTATATGAAGCATTTCATCCCGACGTGATCTTAAGTCCACACTGTGCTATTGATTTTAGC 12636 Query 12619 TACAGCCGCCTGAATAATTTGCTGGGAATACGCAAGAGACAGCCGTTCCAAGAAGG-CTT 12677 | || | | |||||| | |||| ||| | || ||| || | | |||||| || Sbjct 12637 AAAAGTAGATTAAATAATCTATTGGGTATAAGAAAAAGATTACCATATC-AGAAGGATTT 12695 Query 12678 TCGCATTACTTATGATGATTTAAAGGGCGGCAACATTCCCGCGCTGCTAGACTTGGAA 12735 | || ||||||||||||||| || || || |||||||| || ||||||| ||| Sbjct 12696 TATTATCACTTATGATGATTTAGTAGGGGGAAATATTCCCGCTCTATTAGACTTAGAA 12753 Score = 172 bits (190), Expect = 1e-38 Identities = 450/683 (66%), Gaps = 10/683 (1%) Strand=Plus/Plus Query 3167 CCAGTCATAGTTAGAGTGTGTGCTATGATAAGAAAAAATATCTTTTAACAGCAGCGTCAT 3226 ||| ||||| |||||| | ||| || | ||| ||||||||||| | || || || Sbjct 3642 CCAATCATAAGATGAGTGTAAGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGAT 3701 Query 3227 GGCCGTAGGAAGTCCCTTAGTATAGATGTTAATGAATCTAGTTAGTTGGCTGGGGTGCAT 3286 || || || || |||||||| | ||||| ||||| |||| || ||| ||||| Sbjct 3702 TGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCAT 3761 Query 3287 TTTTGGGCTAATAATGTGCAGCTTAGATTGTATCTTTAAATTGCTGATATTTCCACCCTG 3346 ||| ||||| | || || |||| ||| || |||| || |||||||||| Sbjct 3762 TTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAA 3821 Query 3347 ATCTTTTCTAGGGTTCATGTTATGCAAAACCACTAGAACCGCATAG---CCGGTACACTG 3403 |||||||| |||||||| ||||| || ||||| || | |||| ||| | ||| Sbjct 3822 ATCTTTTCGCGGGTTCATATTATGTAATACCAC---AAACAGATAGTACCCGCTGCACGA 3878 Query 3404 AGGATATTTATCGTGAAGTTTTGACGGAAAAGCATGGAAAAATTTGGCAATGCCTTTGTG 3463 |||||||| || |||||||| ||||| || || |||||||| ||||| ||| Sbjct 3879 GGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTT 3938 Query 3464 TTTGCCTAATTCTTCCATACACTCGTCCATGATAATAGCAATGGGCCCCTTTGAAGCCGC 3523 ||||| | |||||||||||| || |||||||| || ||||| || || ||||| Sbjct 3939 CCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGC 3998 Query 3524 CTTGGCAAAAACATTCAGCGGGTTAGTGACATCGTAGTTGTGGTCGGCCAACAGTTCGTC 3583 || |||| ||| || | | ||| || || | ||| || || || | Sbjct 3999 CTGTACAAATTTATTATTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTT 4058 Query 3584 GTAAGACAATTTAATAAAATTTGGTTTTAAAGTGCCCGTCAGTGGCACAATAGTGCCCTC 3643 ||| || | || || || |||| || || ||| | |||||||| || | Sbjct 4059 GTACGATAGTTGCGCGAATCGAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATT 4118 Query 3644 CGGCCCTGGGGTGTAGTTTCCCTCACAAATCTGGGTTTCCCAGGCGGTCATTTCTTGTGG 3703 | || | | ||||||||||| ||| || | || ||| | | ||||| ||||| Sbjct 4119 CTTTCCCATGTTATAGTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGG 4178 Query 3704 GGGAATCATGTCAGTTTGTGGGGCGATGAAAAAGACAGTTTCTGGCGCGGGCGAAAGCAA 3763 ||| |||||||| | | |||| | || || | ||| || || ||||| | || Sbjct 4179 GGGGATCATGTCTGCATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAA 4238 Query 3764 GT--GACTAGAAATTAAATTACGTAGTAGTTGAGACTTGCCACACCCAGTGGGGCCGTAG 3821 | ||| || || | ||| | | || ||| || || |||| ||||| || || || Sbjct 4239 TTTGGAC--GACATAAGATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATAT 4296 Query 3822 ATGACTCCTATCACTGGTTGGGT 3844 ||||| || ||||| ||||| || Sbjct 4297 ATGACCCCAATCACCGGTTGAGT 4319 Score = 161 bits (178), Expect = 2e-35 Identities = 269/386 (70%), Gaps = 2/386 (1%) Strand=Plus/Plus Query 15992 CGAAGATGGCGACCCCATCGATGTTGCCGCAATGGTCCTTCATGCACATCGCCGGCCAAG 16051 |||||||||| || || |||||| | ||||||||||| | | | || ||||| || |||| Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368 Query 16052 ATGCGTCTGAGTATCTGTCGCCCGGCTTAGTG-CAGTTCGCGCGGGCCACAGAATCTTAC 16110 |||| || || ||| | || || || | ||| || || || | || || ||| | ||| Sbjct 15369 ATGCTTCAGAATATTTATC-TCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 16111 TTTAATATCGGAAACAAGTTTAGAAACCCCACCGTGGCGCCCACCCATGACGTCACTACA 16170 ||| | | | || |||||||| || || || ||||| || || || || ||||| Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 16171 GAGCGGTCTCAGCGGCTGCAGTTGCGCTTCGTGCCGGTGGACAAAGAAGACACCCAGTAC 16230 || | || ||| | || || || | || || || | ||| |||||||| || ||||| Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547 Query 16231 ACCTATAAGACCCGTTTTCAGTTGGCCGTGGGCGACAACCGCGTGCTGGACATGGGAAGC 16290 || | ||| |||| ||||| | |||| || || ||| | | | || |||| || Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 16291 ACGTACTTTGACATTAGAGGAACCCTGGACAGAGGACCCAGTTTTAAGCCGTACAGCGGC 16350 | || ||||| || | |||| | |||||||| ||| |||||| || ||||| ||| Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667 Query 16351 ACGGCGTACAACTCCCTGGCCCCCAA 16376 || || ||||| ||| ||||| || Sbjct 15668 ACAGCATACAATAACCTTGCCCCGAA 15693 Score = 154 bits (170), Expect = 3e-33 Identities = 273/393 (69%), Gaps = 4/393 (1%) Strand=Plus/Plus Query 4495 TTCGCATTGGGTTTCGCATTCGACTAACCATGTTAAATCTGGGTT-TGCTGGATCAAAAA 4553 ||||||| || || ||||| |||||||||||||| || | |||| |||||| | Sbjct 4967 TTCGCATCTTGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTC-ATCAAAGA 5025 Query 4554 CTAGTTTTCCTCCAttttttttAATTCTATGTTTACCTTTGGTTTCCATGAGACGGCGCC 4613 || || | |||| ||||| |||||| ||||||||||| ||||| || | ||| Sbjct 5026 TTAAATTATTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCC 5085 Query 4614 CTTCTTCGGTGAGAAAGAGGCTGTCGGTGTCTCCGTAGACCGACTTTAGACAACGGCGCT 4673 || ||| || | || | ||||| || |||||||| | ||| |||| | | ||| | Sbjct 5086 CTGTTTCTGTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGT 5145 Query 4674 CCATAGG-CGTTCCAAGATCTTCAGAATACAAGAACGATGCCCATTCCGAGACAAAAGCG 4732 || ||| ||| || | |||||||||||| || || |||||||| || |||||| Sbjct 5146 CCCAAGGTCGTCCCCA-ATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCG 5204 Query 4733 CGAGTCCAAGCTAATACAAACGAAGCAATGTGAGATGGGTATCTGTCGTTGGGTATAAGA 4792 || ||||| || | ||||| || || || || |||||||| | || || ||| | Sbjct 5205 CGGGTCCAGGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGT 5264 Query 4793 GGGGAAtttttttCAATGGTCTGTAAACAAATTTCATCTTCTTCGGCTTCTAGAAAAGTG 4852 |||||| | ||||| || | || | || | | | || || | || | |||||| Sbjct 5265 GGGGAAGTATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTG 5324 Query 4853 ATTGGCTTGTATGTGTAGGTCACGTGATCTGTG 4885 |||||||| | | || ||||||||||||||| Sbjct 5325 ATTGGCTTAAACTTATATGTCACGTGATCTGTG 5357 Score = 145 bits (160), Expect = 2e-30 Identities = 490/755 (65%), Gaps = 20/755 (3%) Strand=Plus/Plus Query 5080 AAGTTGATCGGCGAAAACGGt--ttttttGTTGTCTAGTTTGGTGGCAAACGAGCCGTAC 5137 || |||||| || |||| || |||||| || |||| |||||||||| || |||||| Sbjct 5573 AATTTGATC--CGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTAC 5630 Query 5138 AGAGCGTTGGACAAGAGTTTAGCGATGCTGCG------GATGGTTTGAtttttttCCTTG 5191 || ||||| ||||| |||||||||||||| || | || | || ||||||||| Sbjct 5631 AGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCC--- 5687 Query 5192 TCTGCCTTTTCCTTGGCCGCAATGTTTAGT-TTGACATACTCTTGAGCGATGCATTTCCA 5250 | ||| || || ||||| || ||||| || || ||| || | ||| ||||| Sbjct 5688 GCGGCC---TCTTTTGCCGCTAT-ATTAGTGGCTACGTATTCTCTTGCCACGCAATTCCA 5743 Query 5251 TTCGGGAAAAACGGTGGTGCGCTCATCTGTTACAATGCGTACTTTCCAGCCTCTGTTGTG 5310 | ||| || || |||||||||| || | | | ||||| |||| || || Sbjct 5744 CTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATG 5803 Query 5311 CAGTGTAATTATGTCGACAGAGGTAGCTACTTCTCCTCGCAGTGATTCGTTAGTCCAACA 5370 || ||||| |||| || || |||||| |||| | ||| || ||||| || Sbjct 5804 CAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCA 5863 Query 5371 CAGCCGCCCTCCCTTTCGGCTGCAGAAAGGAGGCAAAACATCTAAATATGTCTCCGATGG 5430 || ||||| || |||| || || || || ||||||||||| ||| || | || Sbjct 5864 AAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGG 5923 Query 5431 TGGGTCGGCGTCAATAGTAAAAATTCCAGGAAGTAAGTGTGGTGTGAAATAATCAATAGT 5490 | ||| || ||||| || ||| | || | | | || ||||| ||| | Sbjct 5924 GGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTT 5983 Query 5491 TTGAGAGTTTTTTAAGCGCATTTCCCAATTTTTGACGGCTAAAGCTCGATCAAATGGGTT 5550 | | | || ||||| || | | | || || || || ||||| || || Sbjct 5984 GTCACCGGTTGCAAAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATT 6043 Query 5551 GAGCGGTCTTCCGCTGGGAAAGGGGTGAGTGAGGGCGCTGGCGTACATGCCGCAGATGTC 5610 || ||| || ||| | ||| || || | |||||||| ||||| ||| | || || Sbjct 6044 AAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATC 6103 Query 5611 GTAGACGTAAATAGGTTCCGACAGGAGTCCGATGTAAGATGGGTAGCAGCGCCCGCCACG 5670 || || |||||||||||| | | || ||||||| |||||||| || || || | Sbjct 6104 ATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCT 6163 Query 5671 AATGCTACTTCTGACGTAGTCGTACATTTCGTTGGATGGAGCCAAGAGA-CATTGGCCCA 5729 ||||| ||| || | || || || |||| || || |||| ||| ||| | || Sbjct 6164 GATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGAGTATTCG-ACA 6222 Query 5730 GGTGAGTTTTTTGTGGTTTTTCGGCTCGATACACAATCTGTCTAAAAATGGCATGGGAAT 5789 ||| ||||| | |||| | | |||| | || ||||||| ||| |||| Sbjct 6223 AATGATGTTTTTCTAACTTTTGAGTCTTAAACACCAGTTGCTTAAAAATTGCAAAAGAAT 6282 Query 5790 TGGAGCTGATAGTTGGCCGTTGGAAAACGTTAAAA 5824 | ||||| || ||||| || || ||||| |||||| Sbjct 6283 TTGAGCTAATTGTTGGACGCTGAAAAACATTAAAA 6317 Score = 98.7 bits (108), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 8980 TAGATGTATCTGGACATCCAACTAATGCCGGCGGCGGAGATGGAGGCGCGCGACCAGTCG 9039 ||||| || | |||||||| | | || ||| | ||||| || || | ||||| Sbjct 9446 TAGATATACGTAGACATCCATTTTAAACCAGCGCTAGTTATGGATGCCCGTGTCCAGTTT 9505 Query 9040 GCAGCCCGGTTCCAAATGTTGCGCAGCGGGCGAAACACTTCTAGAGTGTACGGGGTTTGG 9099 ||| ||||||||| || ||| |||| ||||| | ||| | ||| | |||||| Sbjct 9506 TGAGCATTGTTCCAAATATTTCGCTGCGGTCGAAAAAGTTCCATAGTATGAACGGTTTGT 9565 Query 9100 CCGGTGAGTCGGGCGCAATCGAGAGCATTCTG-AAAGAA-AAATATAACCTTTCAGATGC 9157 || || ||||| || || || | |||||||| |||||| | |||| ||||||||||||| Sbjct 9566 CCAGTAAGTCGCGCACACTCCAATGCATTCTGAAAAGAAGACATATGACCTTTCAGATGC 9625 Query 9158 ATCCGGTGCTGCGTCAGCTGAAA 9180 |||| || || || || ||||| Sbjct 9626 ATCCTGTACTTCGACATATGAAA 9648 Score = 96.9 bits (106), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 24278 AGAGATAGAATCTTTCCTACCCTCTATGCCATTTTTCAACAAAGCAGGGGGCGGACGAG- 24336 ||| ||| || ||||| || | ||||| || ||||||||| || | || | | Sbjct 22152 AGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAATGT 22211 Query 24337 CACTTTAAAAATTAAAAACCGCACGCTTAGATCACTCACCCGCAGCTGTCTCTACCACAA 24396 || ||||| ||||||| ||||| | |||||||| ||| |||||||| || ||||| Sbjct 22212 CAACCTAAAA-TTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCACAA 22270 Query 24397 GCGCGAAGATCAGCTGCAGCGAACACTTGAAGACGCAGAAGCGCTGTTCTCCAAGTACTG 24456 |||||| ||||||||| | || || ||||||||||| ||||| | ||||| ||| Sbjct 22271 AAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGCTG 22330 Query 24457 TG 24458 || Sbjct 22331 TG 22332 Score = 91.5 bits (100), Expect = 3e-14 Identities = 445/701 (63%), Gaps = 18/701 (3%) Strand=Plus/Plus Query 20571 GTGGGCAAAATGGTATTCTGATACTGATAGGCCGCAGACCACTTAAACTCTGGAATCCTA 20630 || || ||||||| | ||| | | ||||| | || ||| ||||| ||| | | | Sbjct 18707 GTAGGTAAAATGGAAGTCTTAAATTGATAAAATGGAGTCCATTTAAATTCTTGTACAAGA 18766 Query 20631 ACCACGGGGGGCTCTTTAAAGACATGCTGCCACATCTGTTTGGCCAACTGCAGCGCCGTC 20690 | || ||| |||| | || || ||||| || || |||||||| || || | Sbjct 18767 ATGGGGGCGGGTTCTTCCATTACTTGAAACCACAGTTGCTTCGCCAACTGTAGAGCGCTA 18826 Query 20691 ATGACGTCGGGCGCGGATATTTTCCAGTCGCAGTTCTTTTGCGGGTTGGCCCGACTGTTG 20750 || || || || || || ||||| | || || ||||| | ||||||| || |||| Sbjct 18827 ATAACATCCGGAGCTGAAATTTTAAAATCACAATTCTTATTGGGGTTGGAACGGGTGTTT 18886 Query 20751 CGGTATACCGGATTGCAGCATTGAAACACCAGCACGGCCGGGTTGTGGACCGTGGCTAGA 20810 | ||||||||| || |||||||||||||| || | | ||||| | || | || || Sbjct 18887 CTGTATACCGGGTTACAGCATTGAAACACAAGTAAGTACGGGTAATTGATGCTAGCCAGT 18946 Query 20811 ATCTTGGGGTCTTG--CACCAGCTCGCGGTCGATGCTTTCGGTGGCGCTGATGGTAAACG 20868 || || | || || | ||||| | || | || | ||| | | ||||| | Sbjct 18947 ATTTTCTGATCCTGAATAGCAGCT--CCATCTAAACTGGTTGCGGCAGTTAAAGTAAATG 19004 Query 20869 GCGTCACCTTGCACACCTGACGACCTAACAGAGGCGTGGTAGAGGCCCAGTTGCAATCGC 20928 | || ||||| || ||| | ||| | || | || || |||| ||||| || | Sbjct 19005 GTGTTACCTTACAGGTCTGCCTACCGAGTAGTACATTAGTGGAACCCCAATTGCATTCAC 19064 Query 20929 ACTTGATGGGAATGACGA--TCTGCT----CGCCGTCCATCTTGGGATAACAGGCTCGC- 20981 |||| ||||| || | | | || | || |||| |||||||||||||| ||| Sbjct 19065 ACTTAATGGGCATCAACAAGTGTGTTTTTGCGTTCCCCATTTTGGGATAACAGGC-CGCT 19123 Query 20982 TGCAAGGCCATAATCTGCTTAAAAGCGGTCTTGGCCTTTTCTCCCTCGCTATAAAACATG 21041 || || | |||||| || | ||| || | || |||| ||| ||| | || |||| Sbjct 19124 TGAAAAGTCATAATTTGATAAAACGCCTGCAAAGCTTTTTTTCCATCGGTGTATGACATT 19183 Query 21042 CCGCAAGATTTCGTGGAAAAGTTGTTGGCCGGCAAAGGGGCGTCAAACTGACAACACA-- 21099 || || || || ||||| | || |||| | || || ||||| || | Sbjct 19184 CCACAGGACTTTTCAGAAAAAGTATTAGCCGACGCTTTAGCATC---GTGACAGCAAAAA 19240 Query 21100 -TGGCGTCTTCGTTGCGCACTTGAACCACGTTCCTCCCCCAACGGTTGGTGGTGATTTTA 21158 || || ||||| | |||||| | | || | ||||| || || | || Sbjct 19241 GCAGCATCGTCGTTCTTTAATTGAACGATGCTCTTTCCCCACTTATTTGTCACCACCTTG 19300 Query 21159 GTTTTTTCCGGAGTCTCCTTGAGCGCTCTCTGCCCGTTCTCGCTGGACACATCCATTTCT 21218 ||| | ||||| | |||||| | || |||||||| || ||| | || |||||| || Sbjct 19301 GTTCTATCCGGGGACTCCTTTAAAGCCCTCTGCCCATTTTCGGATGTCATATCCATCTCA 19360 Query 21219 ACGATCTGCTCCTTGTTGAGCATCGTCAGGCCGTGCAAACA 21259 || || || || | || ||||| |||||||| ||| Sbjct 19361 ACTATGGATTCTTTATAGATCATCGGTCTGCCGTGCAGACA 19401 Score = 87.8 bits (96), Expect = 4e-13 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 7366 GGAAGAGGCTGGCGTTGCTGCCTCGCTTGAGACGCGAAGGCGACGACTCTCCGGTTGATG 7425 ||||||||||| | | | ||| | |||| || || | |||||||| || ||| Sbjct 7844 GGAAGAGGCTGTCCAAACCGTCTCAATCGAGAAGCATGAGCTATCACTCTCCGATTTATG 7903 Query 7426 TTTTGAATTTCCCGATTCTGGCTGAAGGCTACGGGGCCGGTCACTCTGAACCTGAAAGAT 7485 || |||||||| | |||||| ||| ||| || || |||||| |||| ||||||||| Sbjct 7904 TTCTGAATTTCTCTGTTCTGGGAGAATATTACCGGACCCGTCACTTTGAATCTGAAAGAT 7963 Query 7486 ATTTCCATAGATTCAATGTCGGCATCGTTAATAGCCACCTGCCGCAAAATTTCTTGAACA 7545 | ||| | ||| ||||| || ||| ||||| ||||| | || ||||||| Sbjct 7964 AATTCAACAGAATCAATTTCCATATCATTAATGTTAACCTGTTCTAGTATATCTTGAATG 8023 Query 7546 TCTCCAGAATTATCATGATACGCGATGTCTGTCATAAACTGCTCTA 7591 |||| ||| || ||| | | || || |||||| ||| |||| Sbjct 8024 CCTCCGCTATTTTCTTGAAATGATATATCACTCATAAGCTGATCTA 8069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106998700972358