Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000190.1
Length=33501
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 572 4e-159
>seq4931
Length=27746
Score = 572 bits (634), Expect = 4e-159
Identities = 1388/2087 (67%), Gaps = 42/2087 (2%)
Strand=Plus/Plus
Query 16828 CTCGGTCAGCAATCTGCCCCAAATCGACCCAACTACATTGGTTTCCGAGACAACTTTATC 16887
|||| ||||||| || ||||| | || || || || ||||| | || |||||||||
Sbjct 16127 CTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATC 16186
Query 16888 GGTCTCATGTACTACAACAGTAACGGCAATCTGGGCGTGTTGGCCGGGCAAGCTTCTCAG 16947
|| | |||| || |||||||| ||||| |||| || || ||||| ||| | || |||
Sbjct 16187 GGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAG 16246
Query 16948 CTCAATGCGGTCGTCGACCTGCAAGACCGCAATACCGAGTTGTCTTACCAACTGATGCTG 17007
|| ||||| ||| ||||||| |||||| | ||||| || ||||| || || || ||| |
Sbjct 16247 CTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTA 16306
Query 17008 GACAGTTTGGTGGACCGGTCGCGCTACTTTAGCATGTGGAACCAAGCCGTCGATAGTTAT 17067
|| | ||| || | | || || | ||| ||||||| |||||||| ||| |||
Sbjct 16307 GATAATTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATAT 16366
Query 17068 GACCCAGACGTGCGTGTTCTGGAGAACAACGGAGTGGAAGACGAACTGCCAAATTATTGC 17127
|| ||||| || || | | || || | ||||| ||||||||||| ||||||||||||
Sbjct 16367 GATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGC 16426
Query 17128 TTTCCGCTAAGCGGCGTCGGTCTGACCGAATTG--TACACCGGGGTGGCCAGAAACGG-- 17183
|||||| || | | | ||| | |||| || || | || ||| ||
Sbjct 16427 TTTCCGTTATCTG--GATGTTCT---CCTATTGATTATACTGCTGTTAATCAAAATGGAC 16481
Query 17184 GGGCAATTGGGCCGCCGACAATGACGCCGCAGCCAG-CCAAATCGCCGTCGGCAATGTGC 17242
||||| | ||||| || | || || | | || | | || |||||
Sbjct 16482 AAGCAAT-----CAATAACAATAACCCTGC-GCAGGTTCTTATAGGCAAAGGAAATGTTG 16535
Query 17243 ACGCCATGGAAATTAACATCGCCGCCAACCTGTGGCGCGGTTTCCTGTATTCTAACGTGG 17302
| ||||||||| ||||| || |||||||||||| ||| ||||||||||| | |
Sbjct 16536 AATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCG 16595
Query 17303 CGCTCTACCTTCCCGACGAGTACAAATATACTCCGATTAACGTGACCTTGCCGGA-AAAC 17361
|||| || || ||||| | | ||| ||||| || ||| |||||| | | |
Sbjct 16596 CGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATC 16655
Query 17362 A----CTAACACTTACGCCTACATGAACGGCCGTGTTCCGGCCAATAATCTGGTAGATTC 17417
| ||| || || |||||||| || |||| ||| |||||||||
Sbjct 16656 AGCGGCTA-----TATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGA 16710
Query 17418 CTTTGTCAATGTGGGCGCCAGGTGGTCTCCGGACGTCATGGATAACGTGAATCCCTTTAA 17477
| | |||| | || |||||||||| || || ||||| | || ||||| |||||
Sbjct 16711 TTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAA 16770
Query 17478 CCATCACCGAAACGCCGGACTGCGTTACCGGTCTCAGCTGTTAGGCAACGGGCGTTACTG 17537
|||||| |||| | || || | ||| |||||||||| ||||| || || || ||
Sbjct 16771 TCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGC 16830
Query 17538 TCGCTTCCACATCCAAGTGCCCCAGAAATTCTTCGCCATCAAAAACCTGCTACTCTTGCC 17597
| ||| || || || || || || || || || || | |||| |||| || | ||
Sbjct 16831 TTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACC 16890
Query 17598 CGGCACGTACACGTACGAGTGGTCTTTCAGAAAAGACGTCAACATGATTCTGCAGAGCAC 17657
|| |||||| ||||| |||||||| |||||||| || ||||||||| ||||||| ||
Sbjct 16891 GGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950
Query 17658 GCTCGGCAACGACTTGCGCGTTGACGGCGCCTCCATTAACA-TCGAAAGCGTAAACCTGT 17716
|| ||||| || || | | ||||| || | || ||||| | || ||| | | ||| |
Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGT-CAGTAACATTTGACAGCATTAGCCTAT 17009
Query 17717 ACGCCAGCTTTTTCCCCATGTCCCACAATACGGCCTCCACTTTGGAGGCCATGCTCCGTA 17776
|| | || || || ||||| || || || || || ||| |||| | ||||| || |
Sbjct 17010 TTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCA 17069
Query 17777 ACGACACCAACGACCAGTGTTTCACCGACTA-CTTGTCGGCGGCCAACATGCTCTACCCC 17835
| || ||||| |||| ||| |||||| ||| | || | |||||||| || |
Sbjct 17070 ATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCT 17128
Query 17836 AT--CGCCGNNNNNNNNNNNNNNNTGCCCATTTCCATTCCCTCGCGTAACTGGGCGGCGT 17893
|| | ||| |||| || || ||||| | | || |||||||| |
Sbjct 17129 ATTCCTCCG--CATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCT 17186
Query 17894 TTAGAGGCTGGAGTTTTACTCGCCTCAAGCAAAAGGAAACCCCGGCCCTGGGATCGCCAT 17953
||||||| ||| |||||| | || || ||| ||||||| || || | || || |||
Sbjct 17187 TTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCAT 17246
Query 17954 ACGATCCCTATTTCACCTACTCGGGGTCTATTCCCTATCTCGACGGCACTTTTTACCTCA 18013
|| || || || | |||||||| || || || ||| || | || ||||| |
Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTAT 17306
Query 18014 ATCACACTTTCCGCCGCGTCGCCATTCAGTTCGATTCGTCGGTCAGCTGGCCCGGTAACG 18073
||||||| || | || ||||| ||||| ||||| || || || ||||| || || |
Sbjct 17307 CTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATG 17366
Query 18074 ACCGCCTGCTGACTCCCAACGAATTTGAGATTAAGCGCGCAGTGGACGGGGAAGGCTACT 18133
|| | || | | || || |||||| | || || | | ||||||| |||||||||
Sbjct 17367 ACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATA 17426
Query 18134 CTACGGCCCAGAGCACCATCACTAAAGATTGGTTTTTGACGCAAATGCTGGCCAACTATA 18193
|| | ||||||| || ||||| ||||||| | ||| |||||||| || |||| |
Sbjct 17427 ACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACA 17486
Query 18194 ATATCGGCTACCAAGGGTACTATCTGCCCGACGGCTACAAAGACCGGCTGTATTCGTTCT 18253
||||||| |||||||| | | || ||| | || ||||| | ||||||| || |
Sbjct 17487 ATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTT 17546
Query 18254 TGCGAAACTTCCAGCCGATGTGCCGCCAGGTGGTAGACGAGGCTAATTACGCCAACTATA 18313
| |||| || | || ||||| | || || || || | ||| | || |||
Sbjct 17547 TAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATC 17606
Query 18314 AGGCGGTCTCCATTACTCATCAACACAATAACTCTGGGTTTACCGGCTTTGCTTCCGCCG 18373
| | || | ||| |||| || ||||| || || |||| | || |
Sbjct 17607 AACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAAC---CATTATGGAC 17663
Query 18374 CCGTGCCCCGAGAAGGCCATCCCTACCCGGCCAATTGGCCCTATCCCCTCATCGGCGATA 18433
|| | ||| |||||||||| || || || ||||| | || |||||||| ||
Sbjct 17664 CCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAAC 17723
Query 18434 CGGCCGTGCCCTCCGTCACCCAGCGTAAATTTTTGTGCGACCGCACGCTGTGGCGCATTC 18493
||| | || | || ||| | |||||||| || ||| | || |||||| | ||||
Sbjct 17724 AGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTC 17783
Query 18494 CCTTTTCCTCTAACTTTATGTCTATGGGCACTCTGAGCGACTTGGGTCAGAACCTGCTGT 18553
| || ||||| ||||||||||| ||||| || || | || |||| || || |||| |
Sbjct 17784 CGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTAT 17843
Query 18554 ACGCCAACTCGGCTCATGCTTTAGATATGATTTTTGAAGTGGACCCCATGCCAGAACCCA 18613
| || || || |||||||||||||| |||| | ||||| || | ||| ||||| |
Sbjct 17844 ATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAA 17903
Query 18614 CCCTCCTCTATG-TTTTGTTTGAAGTCTTCGACGTCGCTCGAGTGCATCAGCCGCATAGA 18672
| ||| ||| | | |||||||| || ||| | ||||||||||||| || ||
Sbjct 17904 CTTATCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGA 17962
Query 18673 GGTGTCATTGAGGTGGTGTACTTGAGGACCCCCTTCTCCGCCGGCAACGCCACCACATAA 18732
|||||||| || || | || | || |||||||| || || || |||||| | ||||||
Sbjct 17963 GGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Query 18733 AAATGGGCAGCAGCGAGGAAGAGCTGCGGGCTTTGGTACGCGACTTAAATATAGAGCCCT 18792
| ||||| | | ||||| || | | | ||| || ||| || || |
Sbjct 18023 ATATGGGGACCTCAGAGGACGAAATAAAACGAATTATCTCCGATTTGAATGTA---CCTT 18079
Query 18793 ATTTTTTGGGCACCTTTGATAAAAGGTTTCCGGGGTTCATTCGCGCCGAACAAATGTGTT 18852
||||||||| |||| ||||||| | ||||||||||| || || || | || |
Sbjct 18080 GTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTATCCGAAAGGACAGGTTATGCT 18139
Query 18853 GTGCCATCGTGAACACGGCCGGTCGTGAAACCGGCGGAGTGCACTGG 18899
||||||| || ||||| | ||| ||| ||||| || || |||
Sbjct 18140 GTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGG 18186
Score = 187 bits (206), Expect = 5e-43
Identities = 478/718 (67%), Gaps = 16/718 (2%)
Strand=Plus/Plus
Query 12026 CTGAGGGGAGAAATAGTATTCGTTATTCTCAGCTTCCTCCTTTATACGATCTGACCAAGA 12085
||||||| |||||||| || |||||| | | ||| | ||| ||||| || || |
Sbjct 12044 CTGAGGGAAGAAATAGCATAGTTTATTCACCTTTACCTACGTTACACGATACAACGAAAA 12103
Query 12086 TTTACTTGATCGACAACAAGTCGGCCGACATCGCTTCTCTAAACTACCAAAACGATCACA 12145
||||||| ||||| ||||| | |||||||| |||| ||||| || || |||||||| |
Sbjct 12104 TTTACTTTATCGATAACAAAGCATCCGACATCTCTTCCCTAAATTATCAGAACGATCATA 12163
Query 12146 GCAACTTTCTGACCAGCGTAGTCCAAAATAGCGACTTTACGCCTCAAGAGGCCA--GCAC 12203
| | | | || ||| | |||||| || |||| || | || | || | ||
Sbjct 12164 GTTTATATTTAACATCCGTCATTCAAAATCCGGATTTTAATCCCCTGGAAGGCACGGGAC 12223
Query 12204 -TCAGACCATTAACTTTGACGATCGATCCAGATGGGGTGGGGATTTTAAGACGATCTTGC 12262
||||| | || || || || |||| ||||||||||| |||| || || || |||
Sbjct 12224 ATCAGA---TAAAATTAGATGAAAGATCTAGATGGGGTGGTAATTTAAAAACCATTCTGC 12280
Query 12263 ACATGAACATTCCCAACGTGACCGAGTTTATGTTTAGTAATTCTTTTGGGGCTCGTCTCA 12322
| ||||| || || | ||||||| |||||||||||||||||| | | | |
Sbjct 12281 ATTCAAACATACCAAATATAACCGAGTACATGTTTAGTAATTCTTTTAGAGTTAAGATAC 12340
Query 12323 TGACATCAAAAGTCAATGGTGTGCCT---ACTTACGAATGGGTGACTTTGACCATTCCCG 12379
|| |||||| || | || | | || |||||||||||| | ||||| ||||
Sbjct 12341 CCACTCAAAAAGT---TGACGGGCATTTAAGATATGAATGGGTGACTCTAACCATACCCG 12397
Query 12380 AGGGAAACTATTCGGACATCATGGTCATGGATCTCATGAACAATGCCGTGCTGGAACACT 12439
| ||||| | |||||| || ||||| || ||| | |||||| ||||| | | || |
Sbjct 12398 AAGGAAATTTTTCGGAGATTATGGTTATAGATTTGATGAACGATGCCATTATCTCTCATT 12457
Query 12440 ATTTG-CGAGTAGGCAGAAACAACGGGGTGCCGGAAGAGGACATCGGGGTCAAATTTGAT 12498
||||| | | | ||||| ||| || ||||| || || || || || | ||
Sbjct 12458 ATTTGTCTAAT-GGCAGGTTACGCGGTGTTAATGAAGATGAAATAGGTGTTAAGCTGGAC 12516
Query 12499 ACGCGCAACTTTCGCTTAGGTTGGGACCCAGAAACTAAGCTAGTGATGCCCGGCTCGTAC 12558
|| | || ||| | |||| || || | |||| || | ||||||||| |||
Sbjct 12517 ACTAGAAATTTTAAAATGGGTTATGATCCCTATTATAAGTTAATCATGCCCGGCATGTAT 12576
Query 12559 ACGTACGAGGCGTTCCATCCCGACATTGTCTTGCTGCCCGGCTGCGGCGTTGATTTTACC 12618
|| || || || ||||||||| | |||| || ||| | ||||||||| |
Sbjct 12577 CTATATGAAGCATTTCATCCCGACGTGATCTTAAGTCCACACTGTGCTATTGATTTTAGC 12636
Query 12619 TACAGCCGCCTGAATAATTTGCTGGGAATACGCAAGAGACAGCCGTTCCAAGAAGG-CTT 12677
| || | | |||||| | |||| ||| | || ||| || | | |||||| ||
Sbjct 12637 AAAAGTAGATTAAATAATCTATTGGGTATAAGAAAAAGATTACCATATC-AGAAGGATTT 12695
Query 12678 TCGCATTACTTATGATGATTTAAAGGGCGGCAACATTCCCGCGCTGCTAGACTTGGAA 12735
| || ||||||||||||||| || || || |||||||| || ||||||| |||
Sbjct 12696 TATTATCACTTATGATGATTTAGTAGGGGGAAATATTCCCGCTCTATTAGACTTAGAA 12753
Score = 172 bits (190), Expect = 1e-38
Identities = 450/683 (66%), Gaps = 10/683 (1%)
Strand=Plus/Plus
Query 3167 CCAGTCATAGTTAGAGTGTGTGCTATGATAAGAAAAAATATCTTTTAACAGCAGCGTCAT 3226
||| ||||| |||||| | ||| || | ||| ||||||||||| | || || ||
Sbjct 3642 CCAATCATAAGATGAGTGTAAGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGAT 3701
Query 3227 GGCCGTAGGAAGTCCCTTAGTATAGATGTTAATGAATCTAGTTAGTTGGCTGGGGTGCAT 3286
|| || || || |||||||| | ||||| ||||| |||| || ||| |||||
Sbjct 3702 TGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCAT 3761
Query 3287 TTTTGGGCTAATAATGTGCAGCTTAGATTGTATCTTTAAATTGCTGATATTTCCACCCTG 3346
||| ||||| | || || |||| ||| || |||| || ||||||||||
Sbjct 3762 TTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAA 3821
Query 3347 ATCTTTTCTAGGGTTCATGTTATGCAAAACCACTAGAACCGCATAG---CCGGTACACTG 3403
|||||||| |||||||| ||||| || ||||| || | |||| ||| | |||
Sbjct 3822 ATCTTTTCGCGGGTTCATATTATGTAATACCAC---AAACAGATAGTACCCGCTGCACGA 3878
Query 3404 AGGATATTTATCGTGAAGTTTTGACGGAAAAGCATGGAAAAATTTGGCAATGCCTTTGTG 3463
|||||||| || |||||||| ||||| || || |||||||| ||||| |||
Sbjct 3879 GGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTT 3938
Query 3464 TTTGCCTAATTCTTCCATACACTCGTCCATGATAATAGCAATGGGCCCCTTTGAAGCCGC 3523
||||| | |||||||||||| || |||||||| || ||||| || || |||||
Sbjct 3939 CCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGC 3998
Query 3524 CTTGGCAAAAACATTCAGCGGGTTAGTGACATCGTAGTTGTGGTCGGCCAACAGTTCGTC 3583
|| |||| ||| || | | ||| || || | ||| || || || |
Sbjct 3999 CTGTACAAATTTATTATTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTT 4058
Query 3584 GTAAGACAATTTAATAAAATTTGGTTTTAAAGTGCCCGTCAGTGGCACAATAGTGCCCTC 3643
||| || | || || || |||| || || ||| | |||||||| || |
Sbjct 4059 GTACGATAGTTGCGCGAATCGAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATT 4118
Query 3644 CGGCCCTGGGGTGTAGTTTCCCTCACAAATCTGGGTTTCCCAGGCGGTCATTTCTTGTGG 3703
| || | | ||||||||||| ||| || | || ||| | | ||||| |||||
Sbjct 4119 CTTTCCCATGTTATAGTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGG 4178
Query 3704 GGGAATCATGTCAGTTTGTGGGGCGATGAAAAAGACAGTTTCTGGCGCGGGCGAAAGCAA 3763
||| |||||||| | | |||| | || || | ||| || || ||||| | ||
Sbjct 4179 GGGGATCATGTCTGCATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAA 4238
Query 3764 GT--GACTAGAAATTAAATTACGTAGTAGTTGAGACTTGCCACACCCAGTGGGGCCGTAG 3821
| ||| || || | ||| | | || ||| || || |||| ||||| || || ||
Sbjct 4239 TTTGGAC--GACATAAGATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATAT 4296
Query 3822 ATGACTCCTATCACTGGTTGGGT 3844
||||| || ||||| ||||| ||
Sbjct 4297 ATGACCCCAATCACCGGTTGAGT 4319
Score = 161 bits (178), Expect = 2e-35
Identities = 269/386 (70%), Gaps = 2/386 (1%)
Strand=Plus/Plus
Query 15992 CGAAGATGGCGACCCCATCGATGTTGCCGCAATGGTCCTTCATGCACATCGCCGGCCAAG 16051
|||||||||| || || |||||| | ||||||||||| | | | || ||||| || ||||
Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368
Query 16052 ATGCGTCTGAGTATCTGTCGCCCGGCTTAGTG-CAGTTCGCGCGGGCCACAGAATCTTAC 16110
|||| || || ||| | || || || | ||| || || || | || || ||| | |||
Sbjct 15369 ATGCTTCAGAATATTTATC-TCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427
Query 16111 TTTAATATCGGAAACAAGTTTAGAAACCCCACCGTGGCGCCCACCCATGACGTCACTACA 16170
||| | | | || |||||||| || || || ||||| || || || || |||||
Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487
Query 16171 GAGCGGTCTCAGCGGCTGCAGTTGCGCTTCGTGCCGGTGGACAAAGAAGACACCCAGTAC 16230
|| | || ||| | || || || | || || || | ||| |||||||| || |||||
Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547
Query 16231 ACCTATAAGACCCGTTTTCAGTTGGCCGTGGGCGACAACCGCGTGCTGGACATGGGAAGC 16290
|| | ||| |||| ||||| | |||| || || ||| | | | || |||| ||
Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607
Query 16291 ACGTACTTTGACATTAGAGGAACCCTGGACAGAGGACCCAGTTTTAAGCCGTACAGCGGC 16350
| || ||||| || | |||| | |||||||| ||| |||||| || ||||| |||
Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667
Query 16351 ACGGCGTACAACTCCCTGGCCCCCAA 16376
|| || ||||| ||| ||||| ||
Sbjct 15668 ACAGCATACAATAACCTTGCCCCGAA 15693
Score = 154 bits (170), Expect = 3e-33
Identities = 273/393 (69%), Gaps = 4/393 (1%)
Strand=Plus/Plus
Query 4495 TTCGCATTGGGTTTCGCATTCGACTAACCATGTTAAATCTGGGTT-TGCTGGATCAAAAA 4553
||||||| || || ||||| |||||||||||||| || | |||| |||||| |
Sbjct 4967 TTCGCATCTTGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTC-ATCAAAGA 5025
Query 4554 CTAGTTTTCCTCCAttttttttAATTCTATGTTTACCTTTGGTTTCCATGAGACGGCGCC 4613
|| || | |||| ||||| |||||| ||||||||||| ||||| || | |||
Sbjct 5026 TTAAATTATTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCC 5085
Query 4614 CTTCTTCGGTGAGAAAGAGGCTGTCGGTGTCTCCGTAGACCGACTTTAGACAACGGCGCT 4673
|| ||| || | || | ||||| || |||||||| | ||| |||| | | ||| |
Sbjct 5086 CTGTTTCTGTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGT 5145
Query 4674 CCATAGG-CGTTCCAAGATCTTCAGAATACAAGAACGATGCCCATTCCGAGACAAAAGCG 4732
|| ||| ||| || | |||||||||||| || || |||||||| || ||||||
Sbjct 5146 CCCAAGGTCGTCCCCA-ATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCG 5204
Query 4733 CGAGTCCAAGCTAATACAAACGAAGCAATGTGAGATGGGTATCTGTCGTTGGGTATAAGA 4792
|| ||||| || | ||||| || || || || |||||||| | || || ||| |
Sbjct 5205 CGGGTCCAGGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGT 5264
Query 4793 GGGGAAtttttttCAATGGTCTGTAAACAAATTTCATCTTCTTCGGCTTCTAGAAAAGTG 4852
|||||| | ||||| || | || | || | | | || || | || | ||||||
Sbjct 5265 GGGGAAGTATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTG 5324
Query 4853 ATTGGCTTGTATGTGTAGGTCACGTGATCTGTG 4885
|||||||| | | || |||||||||||||||
Sbjct 5325 ATTGGCTTAAACTTATATGTCACGTGATCTGTG 5357
Score = 145 bits (160), Expect = 2e-30
Identities = 490/755 (65%), Gaps = 20/755 (3%)
Strand=Plus/Plus
Query 5080 AAGTTGATCGGCGAAAACGGt--ttttttGTTGTCTAGTTTGGTGGCAAACGAGCCGTAC 5137
|| |||||| || |||| || |||||| || |||| |||||||||| || ||||||
Sbjct 5573 AATTTGATC--CGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTAC 5630
Query 5138 AGAGCGTTGGACAAGAGTTTAGCGATGCTGCG------GATGGTTTGAtttttttCCTTG 5191
|| ||||| ||||| |||||||||||||| || | || | || |||||||||
Sbjct 5631 AGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCC--- 5687
Query 5192 TCTGCCTTTTCCTTGGCCGCAATGTTTAGT-TTGACATACTCTTGAGCGATGCATTTCCA 5250
| ||| || || ||||| || ||||| || || ||| || | ||| |||||
Sbjct 5688 GCGGCC---TCTTTTGCCGCTAT-ATTAGTGGCTACGTATTCTCTTGCCACGCAATTCCA 5743
Query 5251 TTCGGGAAAAACGGTGGTGCGCTCATCTGTTACAATGCGTACTTTCCAGCCTCTGTTGTG 5310
| ||| || || |||||||||| || | | | ||||| |||| || ||
Sbjct 5744 CTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATG 5803
Query 5311 CAGTGTAATTATGTCGACAGAGGTAGCTACTTCTCCTCGCAGTGATTCGTTAGTCCAACA 5370
|| ||||| |||| || || |||||| |||| | ||| || ||||| ||
Sbjct 5804 CAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCA 5863
Query 5371 CAGCCGCCCTCCCTTTCGGCTGCAGAAAGGAGGCAAAACATCTAAATATGTCTCCGATGG 5430
|| ||||| || |||| || || || || ||||||||||| ||| || | ||
Sbjct 5864 AAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGG 5923
Query 5431 TGGGTCGGCGTCAATAGTAAAAATTCCAGGAAGTAAGTGTGGTGTGAAATAATCAATAGT 5490
| ||| || ||||| || ||| | || | | | || ||||| ||| |
Sbjct 5924 GGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTT 5983
Query 5491 TTGAGAGTTTTTTAAGCGCATTTCCCAATTTTTGACGGCTAAAGCTCGATCAAATGGGTT 5550
| | | || ||||| || | | | || || || || ||||| || ||
Sbjct 5984 GTCACCGGTTGCAAAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATT 6043
Query 5551 GAGCGGTCTTCCGCTGGGAAAGGGGTGAGTGAGGGCGCTGGCGTACATGCCGCAGATGTC 5610
|| ||| || ||| | ||| || || | |||||||| ||||| ||| | || ||
Sbjct 6044 AAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATC 6103
Query 5611 GTAGACGTAAATAGGTTCCGACAGGAGTCCGATGTAAGATGGGTAGCAGCGCCCGCCACG 5670
|| || |||||||||||| | | || ||||||| |||||||| || || || |
Sbjct 6104 ATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCT 6163
Query 5671 AATGCTACTTCTGACGTAGTCGTACATTTCGTTGGATGGAGCCAAGAGA-CATTGGCCCA 5729
||||| ||| || | || || || |||| || || |||| ||| ||| | ||
Sbjct 6164 GATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGAGTATTCG-ACA 6222
Query 5730 GGTGAGTTTTTTGTGGTTTTTCGGCTCGATACACAATCTGTCTAAAAATGGCATGGGAAT 5789
||| ||||| | |||| | | |||| | || ||||||| ||| ||||
Sbjct 6223 AATGATGTTTTTCTAACTTTTGAGTCTTAAACACCAGTTGCTTAAAAATTGCAAAAGAAT 6282
Query 5790 TGGAGCTGATAGTTGGCCGTTGGAAAACGTTAAAA 5824
| ||||| || ||||| || || ||||| ||||||
Sbjct 6283 TTGAGCTAATTGTTGGACGCTGAAAAACATTAAAA 6317
Score = 98.7 bits (108), Expect = 2e-16
Identities = 145/203 (71%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 8980 TAGATGTATCTGGACATCCAACTAATGCCGGCGGCGGAGATGGAGGCGCGCGACCAGTCG 9039
||||| || | |||||||| | | || ||| | ||||| || || | |||||
Sbjct 9446 TAGATATACGTAGACATCCATTTTAAACCAGCGCTAGTTATGGATGCCCGTGTCCAGTTT 9505
Query 9040 GCAGCCCGGTTCCAAATGTTGCGCAGCGGGCGAAACACTTCTAGAGTGTACGGGGTTTGG 9099
||| ||||||||| || ||| |||| ||||| | ||| | ||| | ||||||
Sbjct 9506 TGAGCATTGTTCCAAATATTTCGCTGCGGTCGAAAAAGTTCCATAGTATGAACGGTTTGT 9565
Query 9100 CCGGTGAGTCGGGCGCAATCGAGAGCATTCTG-AAAGAA-AAATATAACCTTTCAGATGC 9157
|| || ||||| || || || | |||||||| |||||| | |||| |||||||||||||
Sbjct 9566 CCAGTAAGTCGCGCACACTCCAATGCATTCTGAAAAGAAGACATATGACCTTTCAGATGC 9625
Query 9158 ATCCGGTGCTGCGTCAGCTGAAA 9180
|||| || || || || |||||
Sbjct 9626 ATCCTGTACTTCGACATATGAAA 9648
Score = 96.9 bits (106), Expect = 7e-16
Identities = 132/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 24278 AGAGATAGAATCTTTCCTACCCTCTATGCCATTTTTCAACAAAGCAGGGGGCGGACGAG- 24336
||| ||| || ||||| || | ||||| || ||||||||| || | || | |
Sbjct 22152 AGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAATGT 22211
Query 24337 CACTTTAAAAATTAAAAACCGCACGCTTAGATCACTCACCCGCAGCTGTCTCTACCACAA 24396
|| ||||| ||||||| ||||| | |||||||| ||| |||||||| || |||||
Sbjct 22212 CAACCTAAAA-TTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCACAA 22270
Query 24397 GCGCGAAGATCAGCTGCAGCGAACACTTGAAGACGCAGAAGCGCTGTTCTCCAAGTACTG 24456
|||||| ||||||||| | || || ||||||||||| ||||| | ||||| |||
Sbjct 22271 AAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGCTG 22330
Query 24457 TG 24458
||
Sbjct 22331 TG 22332
Score = 91.5 bits (100), Expect = 3e-14
Identities = 445/701 (63%), Gaps = 18/701 (3%)
Strand=Plus/Plus
Query 20571 GTGGGCAAAATGGTATTCTGATACTGATAGGCCGCAGACCACTTAAACTCTGGAATCCTA 20630
|| || ||||||| | ||| | | ||||| | || ||| ||||| ||| | | |
Sbjct 18707 GTAGGTAAAATGGAAGTCTTAAATTGATAAAATGGAGTCCATTTAAATTCTTGTACAAGA 18766
Query 20631 ACCACGGGGGGCTCTTTAAAGACATGCTGCCACATCTGTTTGGCCAACTGCAGCGCCGTC 20690
| || ||| |||| | || || ||||| || || |||||||| || || |
Sbjct 18767 ATGGGGGCGGGTTCTTCCATTACTTGAAACCACAGTTGCTTCGCCAACTGTAGAGCGCTA 18826
Query 20691 ATGACGTCGGGCGCGGATATTTTCCAGTCGCAGTTCTTTTGCGGGTTGGCCCGACTGTTG 20750
|| || || || || || ||||| | || || ||||| | ||||||| || ||||
Sbjct 18827 ATAACATCCGGAGCTGAAATTTTAAAATCACAATTCTTATTGGGGTTGGAACGGGTGTTT 18886
Query 20751 CGGTATACCGGATTGCAGCATTGAAACACCAGCACGGCCGGGTTGTGGACCGTGGCTAGA 20810
| ||||||||| || |||||||||||||| || | | ||||| | || | || ||
Sbjct 18887 CTGTATACCGGGTTACAGCATTGAAACACAAGTAAGTACGGGTAATTGATGCTAGCCAGT 18946
Query 20811 ATCTTGGGGTCTTG--CACCAGCTCGCGGTCGATGCTTTCGGTGGCGCTGATGGTAAACG 20868
|| || | || || | ||||| | || | || | ||| | | ||||| |
Sbjct 18947 ATTTTCTGATCCTGAATAGCAGCT--CCATCTAAACTGGTTGCGGCAGTTAAAGTAAATG 19004
Query 20869 GCGTCACCTTGCACACCTGACGACCTAACAGAGGCGTGGTAGAGGCCCAGTTGCAATCGC 20928
| || ||||| || ||| | ||| | || | || || |||| ||||| || |
Sbjct 19005 GTGTTACCTTACAGGTCTGCCTACCGAGTAGTACATTAGTGGAACCCCAATTGCATTCAC 19064
Query 20929 ACTTGATGGGAATGACGA--TCTGCT----CGCCGTCCATCTTGGGATAACAGGCTCGC- 20981
|||| ||||| || | | | || | || |||| |||||||||||||| |||
Sbjct 19065 ACTTAATGGGCATCAACAAGTGTGTTTTTGCGTTCCCCATTTTGGGATAACAGGC-CGCT 19123
Query 20982 TGCAAGGCCATAATCTGCTTAAAAGCGGTCTTGGCCTTTTCTCCCTCGCTATAAAACATG 21041
|| || | |||||| || | ||| || | || |||| ||| ||| | || ||||
Sbjct 19124 TGAAAAGTCATAATTTGATAAAACGCCTGCAAAGCTTTTTTTCCATCGGTGTATGACATT 19183
Query 21042 CCGCAAGATTTCGTGGAAAAGTTGTTGGCCGGCAAAGGGGCGTCAAACTGACAACACA-- 21099
|| || || || ||||| | || |||| | || || ||||| || |
Sbjct 19184 CCACAGGACTTTTCAGAAAAAGTATTAGCCGACGCTTTAGCATC---GTGACAGCAAAAA 19240
Query 21100 -TGGCGTCTTCGTTGCGCACTTGAACCACGTTCCTCCCCCAACGGTTGGTGGTGATTTTA 21158
|| || ||||| | |||||| | | || | ||||| || || | ||
Sbjct 19241 GCAGCATCGTCGTTCTTTAATTGAACGATGCTCTTTCCCCACTTATTTGTCACCACCTTG 19300
Query 21159 GTTTTTTCCGGAGTCTCCTTGAGCGCTCTCTGCCCGTTCTCGCTGGACACATCCATTTCT 21218
||| | ||||| | |||||| | || |||||||| || ||| | || |||||| ||
Sbjct 19301 GTTCTATCCGGGGACTCCTTTAAAGCCCTCTGCCCATTTTCGGATGTCATATCCATCTCA 19360
Query 21219 ACGATCTGCTCCTTGTTGAGCATCGTCAGGCCGTGCAAACA 21259
|| || || || | || ||||| |||||||| |||
Sbjct 19361 ACTATGGATTCTTTATAGATCATCGGTCTGCCGTGCAGACA 19401
Score = 87.8 bits (96), Expect = 4e-13
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 7366 GGAAGAGGCTGGCGTTGCTGCCTCGCTTGAGACGCGAAGGCGACGACTCTCCGGTTGATG 7425
||||||||||| | | | ||| | |||| || || | |||||||| || |||
Sbjct 7844 GGAAGAGGCTGTCCAAACCGTCTCAATCGAGAAGCATGAGCTATCACTCTCCGATTTATG 7903
Query 7426 TTTTGAATTTCCCGATTCTGGCTGAAGGCTACGGGGCCGGTCACTCTGAACCTGAAAGAT 7485
|| |||||||| | |||||| ||| ||| || || |||||| |||| |||||||||
Sbjct 7904 TTCTGAATTTCTCTGTTCTGGGAGAATATTACCGGACCCGTCACTTTGAATCTGAAAGAT 7963
Query 7486 ATTTCCATAGATTCAATGTCGGCATCGTTAATAGCCACCTGCCGCAAAATTTCTTGAACA 7545
| ||| | ||| ||||| || ||| ||||| ||||| | || |||||||
Sbjct 7964 AATTCAACAGAATCAATTTCCATATCATTAATGTTAACCTGTTCTAGTATATCTTGAATG 8023
Query 7546 TCTCCAGAATTATCATGATACGCGATGTCTGTCATAAACTGCTCTA 7591
|||| ||| || ||| | | || || |||||| ||| ||||
Sbjct 8024 CCTCCGCTATTTTCTTGAAATGATATATCACTCATAAGCTGATCTA 8069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 106998700972358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |