Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= AC_000191.1
Length=34185
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 641 9e-180
>seq4931
Length=27746
Score = 641 bits (710), Expect = 9e-180
Identities = 1496/2235 (67%), Gaps = 50/2235 (2%)
Strand=Plus/Plus
Query 18251 TTATG--GAAGACGTGGCTCTGCAAACCCCAGACACACATTTAGTGTACAAGGTGCCAGC 18308
||||| ||||| ||| | | ||| | ||||| || || ||||||||||| | | |
Sbjct 16042 TTATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGCATCTCC 16101
Query 18309 CGCCAACGTAGGCAACACGGCGGCCTTAGCGCAGCAAGCTGCGCCAAACAGAGCAAACTA 18368
|| | | | || | ||| | || |||||| ||||||||||| |||| ||
Sbjct 16102 CGGGCATGAAAAAGACTCTCTTGCCCTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTA 16161
Query 18369 TATTGGCTTCAGAGACAATTTCATCGGTCTAATGTACTACAACAGCAATGGAAACCTAGG 18428
||| || || || || || || ||||| |||||| || ||||| ||| | || | ||
Sbjct 16162 TATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAATAGCAATTTGGG 16221
Query 18429 GGTTTTGGCGGGGCAGGCTTCGCAATTGAATGCCGTCGTGGACCTGCAAGACAGAAATAC 18488
|| || || || || | || || | ||||| ||| | ||||| ||||||||||||||
Sbjct 16222 TGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCAAGACAGAAATAC 16281
Query 18489 AGAGTTGTCTTACCAGCTTATGCTCGACAACCTGTATGACAGAAGCCGGTATTTTAGCAT 18548
||| ||||| || ||||||||| | || || | | || |||| || |||| ||| |
Sbjct 16282 AGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCGATATTACAGCTT 16341
Query 18549 TTGGAACCAGGCTGTAGACAGCTATGACCCGGATGTTAGGATAATAGAGAACCACGGAGT 18608
||||| || || || || ||||| || || || | || ||||| || |||||
Sbjct 16342 GTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGACAATATTGGAGT 16401
Query 18609 GGAAGATGAATTGCCAAACTACTGCTTCCCAATAAGCGGAATAGTTCCTGGCACCACCTC 18668
||||| ||| | ||||| || ||||| || || ||| |||| | |
Sbjct 16402 AGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATGTTCTCCT---ATTGATTA 16458
Query 18669 TACTAGAGTCACCAGAAACGGTGGAAACTGGGAAGCCACGGCAAACAACGATCCGGCGTA 18728
|||| || | ||| || || | || | | ||||| | || ||| |
Sbjct 16459 TACTGCTGTTAATCAAAATGG-----ACAAGCAATCAAT----AACAATAACCCTGCGCA 16509
Query 18729 TGTCAA------CAAAGGCAATTTAGACTGTATGGAAATAAACCTCGCGGCTAATCTGTG 18782
|| |||||| ||| | || || |||||||| ||| | ||||| || |||||
Sbjct 16510 GGTTCTTATAGGCAAAGGAAATGTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTG 16569
Query 18783 GCGCGGGTTCCTATATTCTAATGTTGCCCTGTACTTGCCAGACGACCTTAAGTTCACACC 18842
| || || ||||||||| | || ||||| |||| || || |||| ||| ||
Sbjct 16570 GAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCC 16629
Query 18843 GCCAAATGTCACACTTCCTAACAA-CACCAA-TACGTATGCATACATGAACGGTCGCGTT 18900
||||||| | | || | | || | || ||||| |||||||| |||| ||
Sbjct 16630 CGCAAATGTGGTATTGCCGCAGGATCAGCGGCTA--TATGCTTACATGAATTCTCGCATT 16687
Query 18901 CCAGCGGCTGGGTTGGTTGACACTTACGTCAACATTGGCGCTCGGTGGTCGTTGGATGTG 18960
||||| | || |||| || ||| ||||||| || | ||||||| | ||||||
Sbjct 16688 CCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTG 16747
Query 18961 ATGGATAACGTGAACCCATTCAACCATCACAGAAACGCGGGCCTGCGCTACCGCTCTCAA 19020
||||| | || || ||||| || ||||||||||| | || || | ||| | |||||
Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807
Query 19021 CTTCTAGGCAATGGCCGGTACTGTCATTTTCACATCCAAGTTCCGCAGAAGTTTTTCGCC 19080
|| |||| ||||| || || | ||||| || || |||||||| |||||||| ||
Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867
Query 19081 ATCAAGAACCTTCTTCTGCTGCCTGGGACGTACACTTACGAATGGTCTTTCAGAAAAGAC 19140
| || | | |||||||| || || |||||| ||||||||||||||| ||||||||
Sbjct 16868 CTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGAT 16927
Query 19141 GTTAACATGGTTCTTCAGAGCACTCTTGGGAATGATCTGCGTGTGGACGGAGCCTCCATC 19200
|| |||||| || | ||||| |||||||| ||||||||| | | ||||||||| || |
Sbjct 16928 GTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTA 16987
Query 19201 ACAATTGAGAGCGTTAACCTGTATGCCAGCTTTTTCCCAATGGCACACAATACCGCATCC 19260
||| |||| ||| ||| ||| | ||| | || || || ||| | || || || || ||
Sbjct 16988 ACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCT 17047
Query 19261 ACTCTTGAAGCCATGCTGCGCAATGACACAAACGACCAATCGTTCATCGACTACCTGTCT 19320
||||| ||| | ||||| |||||||| ||||| || || ||| |||||| || ||
Sbjct 17048 ACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC- 17106
Query 19321 TCAGC--CAACATGTTGTATCCAATTCCTGCCAATGCCACTAACCTGCCAATTTCCATCC 19378
|||| |||||| | ||| | |||||| | || || | |||| || || || |
Sbjct 17107 -CAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTC 17165
Query 19379 CATCTCGCAACTGGGCCGCCTTCCGCGGATGGAGCTTCACCAGAATTAAGCAGAAAGAAA 19438
|| | | || ||||| ||||| | || ||| || || ||| | || || | ||||
Sbjct 17166 CAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAA 17225
Query 19439 CACCCGCCTTGGGCTCTCCATTCGACCCCTACTTCACATACTCAGGCACTATACCATACT 19498
|||| || | |||||| |||| ||||| ||||| | ||||| ||| | || || || |
Sbjct 17226 CACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATT 17285
Query 19499 TGGACGGCACCTTTTATCTCAATCACACCTTCAGAAGGGTGTCTATACAGTTTGATTCGT 19558
||| | ||||||||| | |||||| |||||| |||| | |||||||||||||| |
Sbjct 17286 GGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTT 17345
Query 19559 CGGTGCAGTGGCCGGGCAACGACCGCTTGCTCACACCAAATGAGTTTGAGATTAAAAGGC 19618
| || ||||| || || ||| | | | | ||| ||||| ||| | || |||||
Sbjct 17346 CAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAG 17405
Query 19619 TAGTGGATGGAGAGGGGTACAATGTAGCTCAGAGCAACATGACAAAGGACTGGTTTCTAG 19678
||||| | || || || || ||||||||| || || ||||| |||| | |
Sbjct 17406 AGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGA 17465
Query 19679 TGCAGATGCTTGCAAATTACAACATTGGCTACCAGGGCTATCATCTCCCGGATGGCTATA 19738
| || ||||| || | ||||| || || ||||| || | ||| || || | ||||
Sbjct 17466 TTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATA 17525
Query 19739 AAGATCGCACATATTCTTTTCTGAGAAACTTTCAGCCAATGACTAGGCAGATAGTGGACC 19798
||||| | ||||| ||| | ||||| ||| | || ||| ||| || | ||||| |
Sbjct 17526 AAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATC 17585
Query 19799 AAACTAACGTGCCCGCGTATCAGAATGTCCCAATCACCCACCAGCACAATAATTCTGGCT 19858
||| | ||||| || | | | | ||||| |||||||| || |
Sbjct 17586 CTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTT 17645
Query 19859 TT--ACTGGATT-TGCCAGTCCAGCGCTGCCGCGTGAGGGACACCCGTATCCAGCTAACT 19915
|| | ||| || | || | || ||| | || || || ||||| |||||
Sbjct 17646 TTAAAAACCATTATG---GACC--CTTTG-GGCGACAAGGCCATCCTTATCCCTGTAACT 17699
Query 19916 GGCCGTATCCACTGATTAGCGCTACTGCAGTGGCCACGCAAACACAGCGAAAGTTCCTAT 19975
|||| | || || || | | |||| || || ||| |||| || |||
Sbjct 17700 GGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTAT 17759
Query 19976 GTGACAGGACGCTGTGGCGCATTCCATTCTCGTCCAACTTTATGTCTATGGGATCGCTTA 20035
||||||| || |||||| | ||||| ||||| |||||||||||||| |||||| | || |
Sbjct 17760 GTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAA 17819
Query 20036 CCGATCTGGGGCAGAACCTGCTGTATGCAAATGCTGCTCACGCCTTAGACATGACCTTTG 20095
| |||||||| || || |||| ||||||||| | ||||| || ||||||||||| | |
Sbjct 17820 CAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCG 17879
Query 20096 AAGTGGACGCGATGGACGAGCCCACGCTGCTTTATG-TTTTATTTGAAGTGTTTGACGTG 20154
|||| || | ||||| || || || | | ||| | |||||||||| |||||| ||
Sbjct 17880 AAGTAGATTCAATGGAGGAACCAAC-TTATCTCATGATGCTATTTGAAGTATTTGACATG 17938
Query 20155 GTTCGCGTTCACCAGCCTCACAGGGGAGTCATCGAAACTGTCTACCTCAGAACTCCATTC 20214
| || || |||||||| | || ||||| ||| | | || || ||||| || ||
Sbjct 17939 TGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTT 17998
Query 20215 TCTGCCGGCAACGCCACTACATAAGCATGGGATCCAGGGAAGAGGAACTGCGCGCCATTG 20274
|| || || |||||| | |||||| ||||| || || || ||| | |||
Sbjct 17999 TCGGCAGGTAACGCCGCAACATAAATATGGGGACCTCAGAGGACGAAATAAAACGAATTA 18058
Query 20275 TGCGCGACCTCGGAGTTGGGCCATACTTCCTGGGGACGTTCGACAAACGCTTTCCTGGTT 20334
| ||| | || || || | || |||| || | || ||||||||||| || |
Sbjct 18059 TCTCCGA--TTTGA-ATGTACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGT 18115
Query 20335 TT---CTAAATAACTCAAAGCCGAGCTGCGCCATCGTGAATACCGCAGGTAGAGAAACAG 20391
|| | ||| || | | |||| ||||| || || |||| | | ||| |
Sbjct 18116 TTATCCGAAAGGAC---AGGTTATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGG 18172
Query 20392 GCGGCGCGCATTGGCTGGCCCTGGCTTGG-TTCCCTAAATCTAAGGCtttttactttttt 20450
|||| | |||||| | || | |||||| |||||| || ||| | |||||| | |||
Sbjct 18173 GCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATAT-TAAAACATTTTACATGTTT 18231
Query 20451 GATCCATTTGGATTC 20465
|||||||| ||||||
Sbjct 18232 GATCCATTCGGATTC 18246
Score = 179 bits (198), Expect = 8e-41
Identities = 1667/2676 (62%), Gaps = 111/2676 (4%)
Strand=Plus/Plus
Query 4411 AATATGTCTTTTAGCAGGAGGGAAATTGGCAATGGCAGTCCTTTAGTGTATTGATTTATA 4470
|| || ||||||| | |||| |||| || || || |||||||| || ||| |||
Sbjct 3676 AAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATA 3735
Query 4471 AATCTATTAAGCTGTGAAGGCTGCATTTTAGGAGAGATGATGTGCAGCTTTGCTTGTATT 4530
||||| || ||||| | || |||||||| || | || || || ||||| |||
Sbjct 3736 AATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATT 3795
Query 4531 TTTAAATTTGATATGTTCCCAGCGTGATCTTTTCTGGGGTTCATATTGTGCAATACTACC 4590
|||| | ||||| || ||| |||||||| ||||||||||| || ||||| ||
Sbjct 3796 TTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACA 3855
Query 4591 ATGACAGAGTAGCCTGTGCATTTTGGAAACTTATCATGTAGTTTAGATGGAAATGCGTGG 4650
| | | |||| || |||| ||| | || ||| |||||| || ||||| |||||
Sbjct 3856 AACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGA 3915
Query 4651 AAAAACTTTGAAATTCCTTTGTGGGCTCCCAGATCCTCCATACATTCGTCTAGTATTATA 4710
||||| |||| ||| ||| |||| | || |||||||| || || | || ||
Sbjct 3916 AAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATG 3975
Query 4711 GCGATTGGACC--TTTTGATGCCGCTTTAGCAAATATGTTTCTGGGGTCGCTCAGGTCAT 4768
|| || || || ||||| ||||| | ||||| | || | || | | | ||||
Sbjct 3976 GCTATGGGTCCGGTTTTG--GCCGCCTGTACAAATTTATTATTTGGATGCCCTAAATCAT 4033
Query 4769 AGTTGTATTCCTGCGTTAGGTCTGAATATGCCATTTTTATGAATTTTGGCATCAGCGAGC 4828
| || | ||| | || || || | | || |||| || | | | |
Sbjct 4034 AATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGCGAATCGAGGAGTTAATGTAC 4093
Query 4829 CACTCTGTGGAACTAAGGTCCCC-TGAGGCCCCATGCTGTAGTTGCCTTCACAGATCTGT 4887
|| |||| || || || || || | |||||| | ||||| || || || |||
Sbjct 4094 CAGTCTGAGGCAC-AATTTCACCATTCTTTCCCATGTTATAGTTTCCCTCTATAATTTGT 4152
Query 4888 GTTTCCCAAGCACTTATCTCTTgggggggTATCATGTCAATTTGCGGCACTATAAAGAAA 4947
| || ||| | | || || || ||||| |||||||| | || || ||||||
Sbjct 4153 GCTTTCCATGACATAATTTCCTGTGGGGGGATCATGTCTGCATAAGGGGTTACAAAGAAT 4212
Query 4948 ACAGTTTCTGGGGGCGGTGTGATTAACTGTGAGGAAATTATGTTCCTAAGAAGTTGGGAT 5007
| ||| || |||| || | | ||| | || || || | || || | | |||||||
Sbjct 4213 ATAGTCTCCGGGGCGGGATTTAATAATTTGGACGACATAAGATTTCTCAATAATTGGGAT 4272
Query 5008 TTGCCGCAGCCTGTGGGGCCGTAAACAACCCCTATGACAGGCTGCATCTGAAAATTAATA 5067
|| || | || || || || || | ||||| || || || || | | | ||| | |
Sbjct 4273 TTTCCACTACCAGTTGGACCATATATGACCCCAATCACCGGTTGAGTATCACCATTTAAA 4332
Query 5068 GACCTGCATGCCCCTTGCGGGTTCAAATAAGG-TACGCATTTATTAAGCAACTCCCTGAC 5126
| ||| || | |||||| | | |||||| || || | ||
Sbjct 4333 CTACCGCACAATCCATAT---TTCAAACATTTATTTTCATTTAATAT-CATTTTTTCAAC 4388
Query 5127 ACAAACATTTTCTTCAGCCAAATCTAAAAGTAAACTGTGTCCGGCTAATGACATCAGTTG 5186
||||||| || || |||||| | ||| | | ||| || | || | ||||
Sbjct 4389 TAGGGCATTTTCATCGGCTAAATCTTTTAATAAGTTTTCTCCAGCGAGAGAAAGAAGTTC 4448
Query 5187 CTGGAAAGAGGAGAACGTGTGAAGAGGTTTTAGGCCTTCAGCAAAAGGCATGCTTTTTAA 5246
| | | | || || | | || |||||||| || ||| ||| ||| |||||||
Sbjct 4449 GTTTAGACATGAAAAAGATTTTAGTGGTTTTAGACCCTCATGGAAATTCATATTTTTTAA 4508
Query 5247 GCTGTTGTGCAAGACGGTCAGTCTGTCCCATAGTTCATTTATATGTCCCACGGTAATGTC 5306
||| | || || | || | |||||||||| | | ||| |||| |||||||| |
Sbjct 4509 ACTGGTTTGTAAAGCTTCCAATTTGTCCCATAGATTAGTTACATGTTCCACGGTAGCTCC 4568
Query 5307 ATCCAGCATTTGTCGCCGTTTCTTGGATTTGGGTTGCTTTTGGAGTAGGGCATTAG-TCG 5365
|||||||| |||| || || |||||||| | | ||||| | || || | || ||
Sbjct 4569 ATCCAGCAAGGGTCGGTATTCCTGGGATTTGGATGGTTTTTGCAATAAGGTCTGAGCTCC 4628
Query 5366 ATGCTGGTCGAG---GTTTAC-GAGGGTTCTGTCCTTCCACGGCCTCACTGTCCGAGTCA 5421
| || ||| | || || | ||| ||||||| | || ||||| || | || |
Sbjct 4629 AC-CTCGTCCACCCAGTATAAAGTGGGATCTGTCCAT----GGTCTCACCGTTCTGGTGA 4683
Query 5422 GAGTTGTCTCTGTCACTGTGAATGGAGCGGCGTTT--GCTTGGTTTGTCGCTAGAGTGCG 5479
| || | |||||||| ||||| ||| | ||| ||||| || | || || ||
Sbjct 4684 GGGTGGCTTCTGTCACAGTGAACGGAT--GAGTTCCGGCTTGCTTGGAAGCAAGTGTTTT 4741
Query 5480 CTTCAGGCTCATCCGGCTGGTCTGAAAGTGGTCTGAGCCGT--GCTGGCTGTCCGCTAGG 5537
||| || |||| | | ||| ||| ||| |||| |||||| || |
Sbjct 4742 CTTTAGAGTCATTCTGGACGTCGTAAATCTCTCTT--CCGTCTGCTGGCGAGATGCATAG 4799
Query 5538 TAGCACTGGGCGAGAGTATCATAAGATAGCTCAGTGGTTGCGTGCCCTTTAGCTCTTAGC 5597
|| || | | ||||||||| || | || || |||| ||||| || ||||
Sbjct 4800 TAACAAGCTCTTAAAATATCATAAGTGAGAGCTGTAGTGTCGTGACCTTTGGCCCTTAAT 4859
Query 5598 TTGCCTT----TCCCCACGTGACCGCAGTTAGGGCAGTGTATGCTTTTCAACGCATACAG 5653
|| || | | | | |||| ||||| ||| ||| ||| | |||||||
Sbjct 4860 TTTCCGGAGGATGCTCTC-TGAC---AGTTATCGCACCATATTTCTTTTAGAGCATACAT 4915
Query 5654 CTTTGGCGCCAGGAATACAGATTCAGGACTGTATGCATCACTCTTGCATTTTTCGCACTG 5713
|||||| || | || ||||| | || ||||| || || ||||||
Sbjct 4916 CTTTGGAGCTAAAAACACAGACTTTGGGGCATATGCGGGCTGATTACAGCGTTCGCATCT 4975
Query 5714 CGTTTCGCATTCTACTAGCCAGGTGATGCTTGGG-CA-GCTTGGGTCAAACACTAGACTT 5771
|| || |||||||||| ||| || | | || || ||| ||||| | || | |
Sbjct 4976 TGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTCA--TCAAAGATTAAATTA 5033
Query 5772 CCTCCAttttttttAATTCTATGTTTACCTTTTTCTTGCATTAGGCGATGTCCTTCTTCT 5831
| |||| ||||| |||||| |||||||| | ||| || | ||| ||| ||||
Sbjct 5034 TTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCT 5093
Query 5832 GTCACGAACAGGCTGTCGGTGTCACCGTACACGGACTTGA---TTGTGCGTTGTTCCATG 5888
|||||||||| ||||| || || ||||| | || || | || |||| || ||| |
Sbjct 5094 GTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCG--GTCCCAAG 5151
Query 5889 GGCTTTCCCCTGTCGTCGCTGTACAGGAACTCGGCCCACTCCGCCACAAACACTCTTGTC 5948
| | | |||| || || || | || || ||||| || | || | | |||
Sbjct 5152 GTCGT-CCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTC 5210
Query 5949 CAAGCTAGCACAAAAGAAGCGATGTGAGAAGCGTACCGGTTGTTTTTGATAAGTAAAGAA 6008
|| || || ||||| || ||||| || || | ||| ||||| || | || || |||
Sbjct 5211 CAGGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAA 5270
Query 6009 TTTTGCTCGAGGGTGTGTAAACAAATGTCATCGTCATCGGTGTCCATGAATGTGATTGGC 6068
| | || | | || | || | || | || || | | || ||| |||||||||
Sbjct 5271 GTATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGC 5330
Query 6069 TTGTAAGTGTAGGTCACGTGACCCGCCGTAGG-------TATAAAAGG-----GGCGGG- 6115
|| | | || ||||||||| | | || |||||| | ||||||
Sbjct 5331 TTAAACTTATATGTCACGTGATCTGTGTCAGAATTTGCATATAAAGTGTCTATGGCGGGA 5390
Query 6116 --GTCCTCGTC---------TTCCTCATTTGCTTCTG-GCTCG--ACGT---------GC 6152
| ||| | |||| ||| | || | || || |||| ||
Sbjct 5391 GGGGCCTTTTTAGTTGGCGGTTCCGCAT---CATCGGAGCGCGGTACGTCATCGCGAAGC 5447
Query 6153 GGTGCAGGTGGGTAGGCTACGGTAAATTCTGGCATAAGTTCAGCACTTAAGTTGTCGGTT 6212
| || |||| ||| |||| |||||||| |||| || |||| || || ||
Sbjct 5448 GAAGCCGGTGAGTAACAGGCGGTGAATTCTGGGATAACACGGGCGCTTAGATTATCTGTC 5507
Query 6213 TCAATGAAAGAAGAGGATTTGACA----CTGTAGGTGCCAGTGGCGATGTTTTTTGACAT 6268
|| ||| || | | || | ||| || || ||| |||| |||| ||| ||
Sbjct 5508 TCTATGTAACAGGTGGCGCTTACAAAAGCTTTA----CCACTGGCTATGTCTTTCATGAT 5563
Query 6269 TTCTGATTCAAGCTGGTCAGAAAACACTAtttttttGTTATCGAGTTTAGTAGCAAAGCT 6328
|| | || || || | ||||| ||||||||| ||||| | | || ||||||
Sbjct 5564 GTCACTTGTAATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGA 5623
Query 6329 GCCGTACAGAGCATTTGACAACAGTTTGGCTATGCTGCGCAttgtttggtttttgttttt 6388
|||||||| || |||||||||||||| || ||||| ||| ||| ||| | ||||||
Sbjct 5624 ACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTT 5683
Query 6389 gtctgctttttctttgGCGGCTATGTTCAGCTGG--ACATATTCTTTAGCCACGCAACGC 6446
|| || ||||| || ||||| || || ||| || |||||| | ||||||||| |
Sbjct 5684 TTCCGCGGCCTCTTTTGCCGCTATATT-AG-TGGCTACGTATTCTCTTGCCACGCAATTC 5741
Query 6447 CATTCTGGAAATATTGTTGTTCTTTCATCTGGTAGTATGCGCACTTTCCAGCCTCTGTTG 6506
|| | ||||| ||| || |||||||| | | | | ||||| |||| ||
Sbjct 5742 CACTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTA 5801
Query 6507 TGCAGGGTTATCATGTCTACTGATGTGGCAACCTCACCGCGGAGAGGCTCGTTTGTCCAG 6566
|||| || || || | || ||| || || || | | | || |||||||||
Sbjct 5802 TGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAG 5861
Query 6567 CATAGCCTGCCTCCCTTCCTGGAGCAGAAGGGCGGGAGCTCGTCCAGGAAGAGTTCGTCT 6626
|| || | || || || || || || || ||||| | | || | | | |||| |
Sbjct 5862 CAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCA 5921
Query 6627 GGAGGGTCGGCGTCCACTGTGAAGATACCTGGCAACAGCGTGTCATCGAAATAATCAATG 6686
|| | ||| || || | | | || | || ||||| | || ||||| |||
Sbjct 5922 GGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATT 5981
Query 6687 CGCGAACCATGCGCGCTCAACCTTCTGCTCCAGTCTGATGCAG---CAACTGCGCGCTCG 6743
||| | || | | || || | ||||| || ||| | | ||
Sbjct 5982 TTGTCACC--GGTTGCAAAGCGTTTTGA---ATACTGATAGAGAGCCAAGTTTCTG-TCA 6035
Query 6744 AATGGGTTCAGCGGCTGCCCCGCTGGAAATGGATGAGTCAATGCGCTTGCATACATTCCA 6803
|| || || || || | || || | ||||| || |||||||| |||||||||||
Sbjct 6036 AAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCG 6095
Query 6804 CAGATGTCATACACATAAATAGGCTGTTCCAGTATGCCGATGTATGTGGGGTAGCAGCGT 6863
| || ||||| ||||||||||| | || | | || ||||| ||||||||||| |||
Sbjct 6096 GAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGT 6155
Query 6864 CCCCCACGGATGCTTTGGCGAACGTAATCATACATCTCGTTTGACGGCGCAAGCAGGGTG 6923
||||| | |||||||| | || ||||||| || |||| |||||| || || || ||
Sbjct 6156 CCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGAGTA 6215
Query 6924 TTTGAC--ATGTTGGAACGGTTAGGTTTGATTGAGCGATACAAAATTTGTTTGAAGATTG 6981
|| ||| ||| || | | ||||| | | ||| | ||| || || ||||
Sbjct 6216 TTCGACAAATGATGTTTTTCTAACTTTTGA--GTCTTAAACACCAGTTGCTTAAAAATTG 6273
Query 6982 CATGGGAGTTTGAGCTAATTGTTGGTCTTTGAAAAA 7017
|| || ||||||||||||||||| | |||||||
Sbjct 6274 CAAAAGAATTTGAGCTAATTGTTGGACGCTGAAAAA 6309
Score = 134 bits (148), Expect = 3e-27
Identities = 254/371 (68%), Gaps = 2/371 (1%)
Strand=Plus/Plus
Query 17504 CGAAGATGGCGACTCCATCGATGATGCCCCAGTGGTCGTACATGCACATCGCCGGGCAGG 17563
|||||||||| ||||| |||||| | || || ||||| ||| | || ||||| || || |
Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368
Query 17564 ATGCCTCAGAGTACCTGTCTCCCGGCCTGGTG-CAGTTCGCGCAGGCCACAGAGACCTAC 17622
|||| ||||| || | ||||| | | | ||| || || || || || || || |||
Sbjct 15369 ATGCTTCAGAATATTTATCTCCTG-CGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427
Query 17623 TTTAAGCTGGGTAACAAGTTTAGAAACCCCACTGTGGCTCCAACGCATGACGTCACCACA 17682
||| || | | || |||||||| || || || || || || || || || || ||
Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487
Query 17683 GAGCGGTCACAGCGGCTGCAGCTGCGATTTGTTCCAGTTGACCGTGAAGACACGCAGTAC 17742
|| | || ||| | || || | |||||||||||| || ||||| || |||||
Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547
Query 17743 ACTCACAAGACCAGATTTCAGTTGGCTGTGGGCGACAACCGAGTACTTGACATGGCGAGC 17802
||| || || ||||||| | | || || || ||| || || | || ||| ||
Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607
Query 17803 ACTTACTTTGACATCCGCGGTACTTTGGACAGAGGTCCAAGCTTTAAGCCATACAGCGGC 17862
| ||| ||||| || || | | ||||||||||| ||||| || ||||| |||
Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667
Query 17863 ACGGCATACAA 17873
|| ||||||||
Sbjct 15668 ACAGCATACAA 15678
Score = 89.7 bits (98), Expect = 1e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 8614 TATCACTCGTCGGTTTATATTCTGGATTTCCCTCAGGCCGGAGAACACCACAGGACCGCT 8673
|||||||| || ||||| ||||| ||||| || |||||| | || ||||| |
Sbjct 7885 TATCACTCTCCGATTTATGTTCTGAATTTCTCTGTTCTGGGAGAATATTACCGGACCCGT 7944
Query 8674 CACTCGAAACCTGAAAGATATTTCGATAGAATCAATTTCAGAATCATTGGTGGCCACCTG 8733
|||| || |||||||||| ||| | |||||||||||| |||||| || |||||
Sbjct 7945 CACTTTGAATCTGAAAGATAATTCAACAGAATCAATTTCCATATCATTAATGTTAACCTG 8004
Query 8734 TCTTAGAATTTCTGTTACATCGCCGCTGTTTTCGTGATATGCTATTTCTGCCATAAATTG 8793
| ||| || ||| | | ||||| ||||| ||| ||| ||| || ||||| ||
Sbjct 8005 TTCTAGTATATCTTGAATGCCTCCGCTATTTTCTTGAAATGATATATCACTCATAAGCTG 8064
Query 8794 TTCTATTTCCTC 8805
|||| |||||
Sbjct 8065 ATCTAGGTCCTC 8076
Score = 86.0 bits (94), Expect = 1e-12
Identities = 131/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 24786 CTGAGAGCTAAAATATTCCCAACGTTGTACGCCATATTCCAGCAAAGCAGAGGTGGCGGA 24845
|| ||| ||| ||||| ||||| ||||| || || || || ||| || | ||| |
Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208
Query 24846 -GTATCTCTAAAGATAAAGAACCGATCCTTAAGATCCCTCACAAAAAGCTGCCTTTACCA 24904
|| ||||| |||| || || | |||||||| || || || ||||| ||||| ||
Sbjct 22209 TGTCAACCTAAAATTAAA-AATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCA 22267
Query 24905 CAAGCAGGAGAGTCAGCTGCAGAGAACCTTGGAAGACGCCGAGGCTCTACTCCAGAAGTA 24964
||| | || ||||||||||| || |||||||||| ||||| ||||| | ||||
Sbjct 22268 CAAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTG 22327
Query 24965 CTGT 24968
||||
Sbjct 22328 CTGT 22331
Score = 82.4 bits (90), Expect = 2e-11
Identities = 187/270 (69%), Gaps = 10/270 (4%)
Strand=Plus/Plus
Query 7947 ACTAGCATAAATGGCACCAGTTGTTTGCCAAAGCGCCCGTGCCAGGTGTAAGTCTCCACG 8006
|| || | |||||| | | ||||||||||||| || |||||||| ||||| || | |
Sbjct 7242 ACAAGTAAAAATGGAATTAATTGTTTGCCAAAGGCTCCATGCCAGGTATAAGTTTCAATG 7301
Query 8007 TCGTATGTGATGAACAGCCTTTGAATGTCAACGTAC-GAGCCTATTGGCTGAAATGGGAT 8065
|| || ||||| | | | ||| | | || ||| ||||| || || ||| | ||
Sbjct 7302 TCATAAGTGATATAGACACGTTGTGTAT-GACTTACGGAGCCAATGGGAAAAAAAGATAT 7360
Query 8066 AAGTTCCCACCAGTCGGCAGATTTATG-ATTGACGTGGTGAAAGTAAAAATCACGCCTCC 8124
|| ||||||||| || || | | ||| || |||||||| |||||||| | || |
Sbjct 7361 TTTTTTCCACCAGTC-ACATGTTGAAGAATTTACATGGTGAAAATAAAAATCTCTTCTTC 7419
Query 8125 GCACAGAACAAGTGTGAGAATGTTTGT-AAAAGTCT-CCACAGAAATCACATTT-TTGCG 8181
|| ||||| | || | ||||| | |||| || ||||| || |||||||| ||
Sbjct 7420 TGACTGAACATGAATGCG--TGTTTTTAAAAAAACTACCACAAAATTCACATTTATTAAT 7477
Query 8182 AGGGTGAAATTTCTTTTATTAAAAACACCT 8211
| || |||| ||| |||||||||||||
Sbjct 7478 ACTGT-CAATTGATTTAATTAAAAACACCT 7506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 109185806475902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |