Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_000899.1 Length=45063 Score E Sequences producing significant alignments: (Bits) Value seq4931 84.2 6e-12 >seq4931 Length=27746 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/256 (67%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 21456 CCAGATGGTCTATAGACCAGATGGACAACGTGAACCCATTCAATCACCATAGAAACTGGG 21515 |||| ||||| ||||| |||||||| || || ||||| ||||| || ||||| | Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787 Query 21516 GTCTGAAGTATAGGTCGCAATTGCTCGGTAACAGTAGATATTGCAGATTCCACATTCAGG 21575 || ||| ||| ||||| || | | || || || | ||| || || ||||||| Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGG 16847 Query 21576 TTCCACAGAAATATTTTGCTATTAAGAACCTGTTGCTTCTCCCCGGAACTTACACCTATG 21635 |||| || || | |||||| |||| | || | || || || ||| | |||| || | Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907 Query 21636 AATGGGTGCTGAGAAAGGACCCCAATATGATTCTACAGTCCAGCTTGGGGAACGATCTGA 21695 ||||| | ||||| || || |||||| | ||| | | || || ||||||| Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967 Query 21696 GAGCCGACGGAGCCTC 21711 | | |||||||| || Sbjct 16968 GGGAGGACGGAGCGTC 16983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143968458036650