Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_000899.1
Length=45063
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 84.2 6e-12
>seq4931
Length=27746
Score = 84.2 bits (92), Expect = 6e-12
Identities = 172/256 (67%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 21456 CCAGATGGTCTATAGACCAGATGGACAACGTGAACCCATTCAATCACCATAGAAACTGGG 21515
|||| ||||| ||||| |||||||| || || ||||| ||||| || ||||| |
Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787
Query 21516 GTCTGAAGTATAGGTCGCAATTGCTCGGTAACAGTAGATATTGCAGATTCCACATTCAGG 21575
|| ||| ||| ||||| || | | || || || | ||| || || |||||||
Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGG 16847
Query 21576 TTCCACAGAAATATTTTGCTATTAAGAACCTGTTGCTTCTCCCCGGAACTTACACCTATG 21635
|||| || || | |||||| |||| | || | || || || ||| | |||| || |
Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907
Query 21636 AATGGGTGCTGAGAAAGGACCCCAATATGATTCTACAGTCCAGCTTGGGGAACGATCTGA 21695
||||| | ||||| || || |||||| | ||| | | || || |||||||
Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967
Query 21696 GAGCCGACGGAGCCTC 21711
| | |||||||| ||
Sbjct 16968 GGGAGGACGGAGCGTC 16983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143968458036650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |