Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq20 96.9 4e-15
seq17 93.3 4e-14
>seq20
Length=25211774
Score = 96.9 bits (106), Expect = 4e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
||||||||||| ||||| || |||||||| || | || ||||| |||||| |||||
Sbjct 21308483 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCTTC 21308542
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||||||||||| || || || || |||||||| || ||||| || | ||||| ||
Sbjct 21308543 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGGCT 21308602
Query 16346 ATTAATCGTTC 16356
| | ||||||
Sbjct 21308603 ACAACTCGTTC 21308613
>seq17
Length=26966924
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||
Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| | || || || | ||||| |
Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 9450884 CCACCACTCTTTCC 9450871
Score = 86.0 bits (94), Expect = 6e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
||||| || ||| ||||| || |||||||| ||||| || |||||||| || ||||||
Sbjct 9459669 TGGTACTCTGAAACTCGTTTCTCAAAGAAGTTTGTTTTCCCTTCTAAAGAAATGTTTTCC 9459610
Query 15974 ATAAAATCAAAGGGATT 15990
|||||||||||||||||
Sbjct 9459609 ATAAAATCAAAGGGATT 9459593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510997642012760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |