Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq228 435 2e-117
seq176 291 6e-74
seq28 125 5e-24
seq25 91.5 1e-13
seq44 89.7 4e-13
>seq228
Length=2243194
Score = 435 bits (482), Expect = 2e-117
Identities = 436/566 (77%), Gaps = 0/566 (0%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| | ||| |||||| | ||||||| ||||||| |||||||||||||| ||
Sbjct 137064 AAAACATCTTTACATTAATCAATCTTCTCGTATACTTTGAATTTGTACTTAATGGCCTTT 137123
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || || || |||||||| |||| ||| |||||| | |||||| ||||| || | |
Sbjct 137124 TCCTCCTGGACCTTAGAAAGCACACCTGGGTATTCTGGGAGAAGTTTATATTTTTCCAAA 137183
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
|||| ||||| ||||| ||||||| |||||| || || |||| || |||||||| |||
Sbjct 137184 TCAATATCTGGGAAAAATGTGTCACTTTCAAATTCCTGTATGACCCGTGTCACAAATAGT 137243
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194
||||||| || ||| | |||||| ||||| ||||| ||| |||| |||| ||||||
Sbjct 137244 TTAAGATGGCCTGGCTGACTCATGGCTTCCTTATAAACAAAACTGCCTCTTGCTATCCAA 137303
Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254
||||||||||||||||| ||||||||| || || |||||||||| || |||||||||
Sbjct 137304 ACCATGTCTACTTTATTGTTTAATTCTGGTTGCTCAATAAGTTTTAAGGCTTCATCTAAA 137363
Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314
|| || || | ||||||||||| ||||| | ||||| ||||| | || ||||| | |
Sbjct 137364 CTTTTGGCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTACTAAGAACTATA 137423
Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374
||||||||| | |||||||| || |||||||||||||| |||||||| || || |||||
Sbjct 137424 TTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCC 137483
Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434
|||||||| | |||||||||| || ||| | ||| || || ||||||||| ||||||
Sbjct 137484 ATAATCACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTGGTCATTCTTCGGAAATAC 137543
Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494
|| || ||| || | || ||||| || | | || | |||||| ||||||||||
Sbjct 137544 TTGAATTCACTCCTGAGCGGGGGCCAGGGGAGGGCGCCATTTTTGCCGATGCCCATGTGC 137603
Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520
|| | || || || |||||||| ||
Sbjct 137604 TGGGACACGGCCACGATGCAGTTCAG 137629
>seq176
Length=3041965
Score = 291 bits (322), Expect = 6e-74
Identities = 399/557 (72%), Gaps = 29/557 (5%)
Strand=Plus/Minus
Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026
||||||| |||||| |||||||||||||||||||||||||| | || || | ||| ||
Sbjct 2934042 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCCTTTTCCTATTGGACC 2933983
Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086
| ||| | |||| | | | |||| | | ||||||||| || | |||| |||||||
Sbjct 2933982 TCAGAGAACACACCTTGGTGTTCTGGGAGACATTTGTATTTTTCCAAATCAGTTTCTGGA 2933923
Query 4087 A---AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCG 4143
| |||| ||||||| |||||| || | |||||| |||||||| | |||||||| |
Sbjct 2933922 AAAAAAAATGTGTCACTTTCAAATTC--CCGTGATCCAGGTCACAAATAATTTAAGATGG 2933865
Query 4144 CATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCT 4203
||| | | |||| |||| ||||| | | |||| ||||| |||||| |||||| ||
Sbjct 2933864 AGTGGCTGATTCATGACTTCCTTATAAAAACAACTGCCTCC---TATCCAAACCATGCCT 2933808
Query 4204 ACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCT 4263
|||||||| |||||||||| || || | |||||||| || || |||
Sbjct 2933807 ACTTTATTGTCTAATTCTGGTTGCTCAATGAGTTTTAAGGCTTCCTCT------------ 2933760
Query 4264 AAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG 4323
||||||||||| ||||| | ||||| | ||| | || ||||| | |||| ||
Sbjct 2933759 ---AAATGAGCTCTTTGTGGGGGTTCCTTGAATTCTCTACTAAGAACTATATTA----TG 2933707
Query 4324 CCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACT 4383
| |||||||| || || |||| |||| |||||||| || || ||||| |||||||
Sbjct 2933706 TCCTTTAAAGGTCGAGCCTACTCATGAATGGAGAACCAGGTTTTCCTACCCGTAATCACC 2933647
Query 4384 AAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCA 4443
| || ||||| || || ||||| || || |||||||||||||||| || || |||
Sbjct 2933646 AGAT--TGTTTGCCTTCTAGTGAAGAGGTTGTGGTCATTCTTTGGAAATACTTGAATTCA 2933589
Query 4444 TTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACA 4503
|| | | || ||||| | | || | || ||||| |||||||||| || | |||
Sbjct 2933588 CTCCTGAACCTGGGCCAGGAGAGGTCCCATTTTTTGCTGGTGCCCATGTTCTGGGACACA 2933529
Query 4504 GCAACAATGCAGTTTAG 4520
|| | |||||||| ||
Sbjct 2933528 GCGATGATGCAGTTCAG 2933512
>seq28
Length=16717608
Score = 125 bits (138), Expect = 5e-24
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| ||||||||||||||||| |||||||||
Sbjct 9296099 TTATAAACAGAACTGCCTCCTACTATCCAAACCATGTCTACTTTATTGTTTAATTCTGGT 9296040
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283
|| || |||||||||| || ||||||||||| || || | ||||||||||| |||||
Sbjct 9296039 TGCTCAATAAGTTTTAAGGCTTCATCTAAACTTTTGGCCAGAAAATGAGCTCCTTGTGG 9295981
Score = 107 bits (118), Expect = 1e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | || ||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 9291307 CTTGAGTTCTCTACTAAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 9291248
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| || || ||||||||||||| | |||||||||| ||
Sbjct 9291247 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 9291199
>seq25
Length=23434732
Score = 91.5 bits (100), Expect = 1e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| || |||||||| |||||||||||||| || ||||| || || || || || ||||
Sbjct 21716018 CTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTCCCCTT 21715959
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| | || | || |||| || || | || ||||| || |||||||| |||||||| |
Sbjct 21715958 CTTTTCGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATCCCAGA 21715899
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195
| | ||| || | || || |||||| || || |||||
Sbjct 21715898 TTTTCACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 21715856
>seq44
Length=9945738
Score = 89.7 bits (98), Expect = 4e-13
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 26957 GGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTAGG 27016
||||| ||||| |||||||| || | ||| ||||||||||| |||| || || ||
Sbjct 3220066 GGGAG--ACGCAGGTGCAGCCCACGGCCACCAGCATCTTCTCCAGCCGGAAGGAGGGCGG 3220123
Query 27017 GCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTCAT 27076
|||| | || | | | |||| ||| || | ||| || ||||| || || ||||||||
Sbjct 3220124 GCAGTGCTGCGGTTCCCTCCGCAGCACCAGGACCTCCTGCTGGATGGGCACAGAGTTCAT 3220183
Query 27077 GTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCCCA 27136
| || ||| || | ||| | || || || || || | || ||| |||| || |||||
Sbjct 3220184 GCCGTGGTCCACCTCCCCCTGTGCGTTCACGCAGCCCAGGTGGCGGCACTCCGCCTCCCA 3220243
Query 27137 AATCAC 27142
|||||
Sbjct 3220244 GATCAC 3220249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360964171584443
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |