Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq228 435 2e-117 seq176 291 6e-74 seq28 125 5e-24 seq25 91.5 1e-13 seq44 89.7 4e-13 >seq228 Length=2243194 Score = 435 bits (482), Expect = 2e-117 Identities = 436/566 (77%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| | ||| |||||| | ||||||| ||||||| |||||||||||||| || Sbjct 137064 AAAACATCTTTACATTAATCAATCTTCTCGTATACTTTGAATTTGTACTTAATGGCCTTT 137123 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || || |||||||| |||| ||| |||||| | |||||| ||||| || | | Sbjct 137124 TCCTCCTGGACCTTAGAAAGCACACCTGGGTATTCTGGGAGAAGTTTATATTTTTCCAAA 137183 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| ||||| ||||| ||||||| |||||| || || |||| || |||||||| ||| Sbjct 137184 TCAATATCTGGGAAAAATGTGTCACTTTCAAATTCCTGTATGACCCGTGTCACAAATAGT 137243 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||||| || ||| | |||||| ||||| ||||| ||| |||| |||| |||||| Sbjct 137244 TTAAGATGGCCTGGCTGACTCATGGCTTCCTTATAAACAAAACTGCCTCTTGCTATCCAA 137303 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 ||||||||||||||||| ||||||||| || || |||||||||| || ||||||||| Sbjct 137304 ACCATGTCTACTTTATTGTTTAATTCTGGTTGCTCAATAAGTTTTAAGGCTTCATCTAAA 137363 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || || | ||||||||||| ||||| | ||||| ||||| | || ||||| | | Sbjct 137364 CTTTTGGCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTACTAAGAACTATA 137423 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | |||||||| || |||||||||||||| |||||||| || || ||||| Sbjct 137424 TTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCC 137483 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| | |||||||||| || ||| | ||| || || ||||||||| |||||| Sbjct 137484 ATAATCACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTGGTCATTCTTCGGAAATAC 137543 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 || || ||| || | || ||||| || | | || | |||||| |||||||||| Sbjct 137544 TTGAATTCACTCCTGAGCGGGGGCCAGGGGAGGGCGCCATTTTTGCCGATGCCCATGTGC 137603 Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520 || | || || || |||||||| || Sbjct 137604 TGGGACACGGCCACGATGCAGTTCAG 137629 >seq176 Length=3041965 Score = 291 bits (322), Expect = 6e-74 Identities = 399/557 (72%), Gaps = 29/557 (5%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | || || | ||| || Sbjct 2934042 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCCTTTTCCTATTGGACC 2933983 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | ||| | |||| | | | |||| | | ||||||||| || | |||| ||||||| Sbjct 2933982 TCAGAGAACACACCTTGGTGTTCTGGGAGACATTTGTATTTTTCCAAATCAGTTTCTGGA 2933923 Query 4087 A---AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCG 4143 | |||| ||||||| |||||| || | |||||| |||||||| | |||||||| | Sbjct 2933922 AAAAAAAATGTGTCACTTTCAAATTC--CCGTGATCCAGGTCACAAATAATTTAAGATGG 2933865 Query 4144 CATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCT 4203 ||| | | |||| |||| ||||| | | |||| ||||| |||||| |||||| || Sbjct 2933864 AGTGGCTGATTCATGACTTCCTTATAAAAACAACTGCCTCC---TATCCAAACCATGCCT 2933808 Query 4204 ACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCT 4263 |||||||| |||||||||| || || | |||||||| || || ||| Sbjct 2933807 ACTTTATTGTCTAATTCTGGTTGCTCAATGAGTTTTAAGGCTTCCTCT------------ 2933760 Query 4264 AAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG 4323 ||||||||||| ||||| | ||||| | ||| | || ||||| | |||| || Sbjct 2933759 ---AAATGAGCTCTTTGTGGGGGTTCCTTGAATTCTCTACTAAGAACTATATTA----TG 2933707 Query 4324 CCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACT 4383 | |||||||| || || |||| |||| |||||||| || || ||||| ||||||| Sbjct 2933706 TCCTTTAAAGGTCGAGCCTACTCATGAATGGAGAACCAGGTTTTCCTACCCGTAATCACC 2933647 Query 4384 AAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCA 4443 | || ||||| || || ||||| || || |||||||||||||||| || || ||| Sbjct 2933646 AGAT--TGTTTGCCTTCTAGTGAAGAGGTTGTGGTCATTCTTTGGAAATACTTGAATTCA 2933589 Query 4444 TTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACA 4503 || | | || ||||| | | || | || ||||| |||||||||| || | ||| Sbjct 2933588 CTCCTGAACCTGGGCCAGGAGAGGTCCCATTTTTTGCTGGTGCCCATGTTCTGGGACACA 2933529 Query 4504 GCAACAATGCAGTTTAG 4520 || | |||||||| || Sbjct 2933528 GCGATGATGCAGTTCAG 2933512 >seq28 Length=16717608 Score = 125 bits (138), Expect = 5e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||| ||||||||| Sbjct 9296099 TTATAAACAGAACTGCCTCCTACTATCCAAACCATGTCTACTTTATTGTTTAATTCTGGT 9296040 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || || |||||||||| || ||||||||||| || || | ||||||||||| ||||| Sbjct 9296039 TGCTCAATAAGTTTTAAGGCTTCATCTAAACTTTTGGCCAGAAAATGAGCTCCTTGTGG 9295981 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || ||||| | |||||||||| | |||||||| || |||||||| || Sbjct 9291307 CTTGAGTTCTCTACTAAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 9291248 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| | |||||||||| || Sbjct 9291247 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 9291199 >seq25 Length=23434732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || |||||||| |||||||||||||| || ||||| || || || || || |||| Sbjct 21716018 CTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTCCCCTT 21715959 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | | || | || |||| || || | || ||||| || |||||||| |||||||| | Sbjct 21715958 CTTTTCGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATCCCAGA 21715899 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195 | | ||| || | || || |||||| || || ||||| Sbjct 21715898 TTTTCACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 21715856 >seq44 Length=9945738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 26957 GGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTAGG 27016 ||||| ||||| |||||||| || | ||| ||||||||||| |||| || || || Sbjct 3220066 GGGAG--ACGCAGGTGCAGCCCACGGCCACCAGCATCTTCTCCAGCCGGAAGGAGGGCGG 3220123 Query 27017 GCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTCAT 27076 |||| | || | | | |||| ||| || | ||| || ||||| || || |||||||| Sbjct 3220124 GCAGTGCTGCGGTTCCCTCCGCAGCACCAGGACCTCCTGCTGGATGGGCACAGAGTTCAT 3220183 Query 27077 GTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCCCA 27136 | || ||| || | ||| | || || || || || | || ||| |||| || ||||| Sbjct 3220184 GCCGTGGTCCACCTCCCCCTGTGCGTTCACGCAGCCCAGGTGGCGGCACTCCGCCTCCCA 3220243 Query 27137 AATCAC 27142 ||||| Sbjct 3220244 GATCAC 3220249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360964171584443