Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001405.1 Length=35937 Score E Sequences producing significant alignments: (Bits) Value seq4931 407 3e-109 >seq4931 Length=27746 Score = 407 bits (450), Expect = 3e-109 Identities = 997/1496 (67%), Gaps = 24/1496 (2%) Strand=Plus/Plus Query 20262 CATGGAAATTAACCTAAATGCCAACCTATGGAGAAATTTCCTTTACTCCAATATTGCGCT 20321 ||||||||| ||| || |||||||| |||| ||||| || || || ||||| ||||| Sbjct 16540 CATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCT 16599 Query 20322 GTACCTGCCAGACAAGCTAAAATACAACCCCACCAATGTGGAAATATCTGACAACCCCAA 20381 ||| ||||| || || | ||| || ||| | ||||||| ||| || || || Sbjct 16600 GTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGG---TAT-TG----CCGCAG 16651 Query 20382 CACCTACGACTACATGAACAAGCGAGTGGTGGC--TCC---CGGG---CTTGTAGACTGC 20433 | | || ||| ||| | || | | || ||| |||| || ||||| Sbjct 16652 GATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGAT 16711 Query 20434 TACATTAACCTTGGGGCGCGCTGGTCTCTGGACTACATGGACAACGTTAATCCCTTTAAC 20493 || || ||| | || | | ||||| | || ||||||| |||||||| ||||| Sbjct 16712 TATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAAT 16771 Query 20494 CACCACCGCAATGCGGGCCTCCGTTATCGCTCCATGTTGTTGGGAAACGGCCGCTACGTG 20553 || ||| | ||| | || | | || | || | | || ||||| || ||||| | Sbjct 16772 CATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCT 16831 Query 20554 CCCTTTCACATTCAGGTGCCCCAAAAGTTTTTTGCCATTAAAAACCTCCTCCTCCTGCCA 20613 ||||||| |||||||| || |||||||||||||| |||||| | || || || || Sbjct 16832 TCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCG 16891 Query 20614 GGCTCATATACATATGAATGGAACTTCAGGAAGGATGTTAACATGGTTCTGCAGAGCTCT 20673 || || || | || |||||| || || || ||||| |||||| || ||||||| || Sbjct 16892 GGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACT 16951 Query 20674 CTGGGAAACGATCTTAGAGTTGACGGGGCTAGCATTAA-GTTTGACAGCATTTGTCTTTA 20732 || || || ||||| || | ||||| || || ||| |||||||||||| | || | Sbjct 16952 CTTGGCAATGATCTGAGGGAGGACGGAGC-GTCAGTAACATTTGACAGCATTAGCCTATT 17010 Query 20733 CGCCACCTTCTTCCCCATGGCCCACAACACGGCCTCCACGCTGGAAGCCATGCTCAGAAA 20792 || || ||||| || ||| | || ||||| || || || |||||| | ||||| | || Sbjct 17011 TGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAA 17070 Query 20793 TGACACCAACGACCAGTCCTTTAATGACTACCTTTCCGCCGCCAACATGCTATACCCCAT 20852 ||| ||||| |||||||| ||||| |||||| || |||||||| || | || Sbjct 17071 TGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTAT 17130 Query 20853 ACCCGCCAACGCCACCAAC-GTGCCCATCTCCATCCCATCGCGCAACTGGGCAGCATTTC 20911 || || | | |||| ||||| ||||| || ||| | | || ||||| || ||| Sbjct 17131 -TCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTA 17189 Query 20912 GCGGTTGGGCCTTCACACGCTTGAAGACAA-AGGAAACCCCTTCCCTGGGATCAGGCTAC 20970 | |||||||| || || | | || |||| ||||||| || || | || || | | Sbjct 17190 GAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTT 17248 Query 20971 GACCCTTACTACACCTACTCTGGCTCCATACCATACCTTGACGGAACCTTCTATCTTAAT 21030 ||||| |||| | ||||| ||||| || || || || | ||||| ||| | | Sbjct 17249 GACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCT 17308 Query 21031 CACACCTTTAAGAAGGTGGCCATTACCTTTGACTCTTCTGTTAGCTGGCCGGGCAACGAC 21090 ||||| | | ||||||||||| ||||| ||||| || || ||||| || || ||| Sbjct 17309 CACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGAC 17368 Query 21091 CGCCTGCTTACTCCCAATGAGTTTGAGATTAAACGCTCAGTTGACGGGGAGGGCTACAAC 21150 | || | | || ||||| ||| | || ||| | || |||| ||| ||||| ||| Sbjct 17369 AGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAAC 17428 Query 21151 GTAGCTCAGTGCAACATGACCAAGGACTGGTTCCTGGTGCAGATGTTGGCCAACTACAAT 21210 ||||| ||| || || ||||| |||| || | || ||| | || |||||||| Sbjct 17429 ACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAAT 17488 Query 21211 ATTGGCTACCAGGGCTTCTACATTCCAGAAAGCTACAAGGACCGCATGTACTCGTTCTTC 21270 || || ||||| || || || | || | || || || | |||| || || || Sbjct 17489 ATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTA 17548 Query 21271 AGAAACTTCCAGCCCATGAGCCGGCAAGTGGTTGACGATACTAAATACAAGGAGTATCAG 21330 ||||| || | |||||| | | ||||| || || | ||| | | ||||| Sbjct 17549 AGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAA 17608 Query 21331 CAGGTTGGAATTCTTCACCAGCATAACAACTCAGGATTCGTAGGCTACCTCGCTCCCACC 21390 | |||| || | |||||||| || ||||| || | | | | ||| Sbjct 17609 CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTT 17668 Query 21391 ATGCGCGAGGGACAGGCTTACCCCGCCAACGTGCCCTACCCACTAATAGGCAAAACCGCG 21450 ||| | || || |||| ||| ||| ||| | ||| || || || || || Sbjct 17669 GGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCA 17728 Query 21451 GTTGACAGTATTACCCAGAAAAAGTTTCTTTGCGATCGCACCCTTTGGCGCATCCCATTC 21510 | | | | ||||| |||| ||| ||| | || || | || || ||| | || || ||| Sbjct 17729 GGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTC 17788 Query 21511 TCCAGTAACTTTATGTCCATGGGCGCACTCACAGACCTGGGCCAAAACCTTCTCTACGCC 21570 ||| ||||||||||||||||| |||| ||||| ||||| ||||| | || || || Sbjct 17789 TCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCA 17848 Query 21571 AACTCCGCCCACGCGCTAGACATGACTTTTGAGGTGGATCCCATGGACGAGCCCACCCTT 21630 || || || || || |||||||||| | || || ||| | ||||| || || || | Sbjct 17849 AATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTAT 17908 Query 21631 CTTTATG-TTTTGTTTGAAGTCTTTGACGTGGTCCGTGTGCACCAGCCGCACCGCGGCGT 21689 | | ||| | | |||||||| |||||| || | | ||||| ||||| || || || || Sbjct 17909 C-TCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967 Query 21690 CATCGAGACCGTGTACCTGCGCACGCCCTTCTCGGCCGGCAACGCCACAACATAAA 21745 ||| || | || || | || ||||| ||||| || |||||| ||||||||| Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAA 18023 Score = 159 bits (176), Expect = 8e-35 Identities = 208/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 19833 GCCAAACAGACCCAATTACATTGCTTTCAGGGACAATTTTATTGGCCTAATGTATTATAA 19892 ||||||||| || ||||| || | ||| ||||| || ||||| || |||||| |||||| Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 19893 CAGCACTGGCAACATGGGTGTTCTTGCTGGTCAGGCATCGCAGCTAAATGCCGTGGTAGA 19952 ||| | | |||| ||||||| | || ||||| | || ||||| ||||| || | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 19953 TTTGCAAGACAGAAACACAGAGCTGTCCTATCAACTCTTGCTTGATTCCATAGGTGATAG 20012 | ||||||||||| ||||| |||| ||||| || || | ||| || ||||| Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 20013 AACCAGATATTTTTCTATGTGGAATCAGGCTGTAGACAGCTATGATCCAGATGTTAGAAT 20072 ||| |||||| |||||||||| || || || ||||||||||| || |||| Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 20073 CATTGAAAACCATGGAACTGAGGATGAATTGCCAAATTATTGTTTTCC 20120 ||| || || |||| || || ||| | ||||||||||| ||||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Score = 104 bits (114), Expect = 5e-18 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26924 CTTAGAAATAGGATTTTTCCCACTCTGTATGCTATATTTCAACAAAGCAGGGGCCAAGAA 26983 || ||||||| ||| ||||| ||| |||||||||| ||||||||| || | || || || Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208 Query 26984 CAAGAGCTGAAAATAAAAAACAGGTCTCTGCGCTCCCTCACCCGCAGCTGCCTGTATCAC 27043 | | ||||| ||||| | || | | || || ||| ||||| || |||||| Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268 Query 27044 AAAAGCGAAGATCAGCTTCGGCGCACGCTGGAAGACGCGGAGGCTCT 27090 |||| |||||| ||||| | | | || ||||||||||| ||||| || Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114787866186734