Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001405.1
Length=35937
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 407 3e-109
>seq4931
Length=27746
Score = 407 bits (450), Expect = 3e-109
Identities = 997/1496 (67%), Gaps = 24/1496 (2%)
Strand=Plus/Plus
Query 20262 CATGGAAATTAACCTAAATGCCAACCTATGGAGAAATTTCCTTTACTCCAATATTGCGCT 20321
||||||||| ||| || |||||||| |||| ||||| || || || ||||| |||||
Sbjct 16540 CATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCT 16599
Query 20322 GTACCTGCCAGACAAGCTAAAATACAACCCCACCAATGTGGAAATATCTGACAACCCCAA 20381
||| ||||| || || | ||| || ||| | ||||||| ||| || || ||
Sbjct 16600 GTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGG---TAT-TG----CCGCAG 16651
Query 20382 CACCTACGACTACATGAACAAGCGAGTGGTGGC--TCC---CGGG---CTTGTAGACTGC 20433
| | || ||| ||| | || | | || ||| |||| || |||||
Sbjct 16652 GATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGAT 16711
Query 20434 TACATTAACCTTGGGGCGCGCTGGTCTCTGGACTACATGGACAACGTTAATCCCTTTAAC 20493
|| || ||| | || | | ||||| | || ||||||| |||||||| |||||
Sbjct 16712 TATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAAT 16771
Query 20494 CACCACCGCAATGCGGGCCTCCGTTATCGCTCCATGTTGTTGGGAAACGGCCGCTACGTG 20553
|| ||| | ||| | || | | || | || | | || ||||| || ||||| |
Sbjct 16772 CATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCT 16831
Query 20554 CCCTTTCACATTCAGGTGCCCCAAAAGTTTTTTGCCATTAAAAACCTCCTCCTCCTGCCA 20613
||||||| |||||||| || |||||||||||||| |||||| | || || || ||
Sbjct 16832 TCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCG 16891
Query 20614 GGCTCATATACATATGAATGGAACTTCAGGAAGGATGTTAACATGGTTCTGCAGAGCTCT 20673
|| || || | || |||||| || || || ||||| |||||| || ||||||| ||
Sbjct 16892 GGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACT 16951
Query 20674 CTGGGAAACGATCTTAGAGTTGACGGGGCTAGCATTAA-GTTTGACAGCATTTGTCTTTA 20732
|| || || ||||| || | ||||| || || ||| |||||||||||| | || |
Sbjct 16952 CTTGGCAATGATCTGAGGGAGGACGGAGC-GTCAGTAACATTTGACAGCATTAGCCTATT 17010
Query 20733 CGCCACCTTCTTCCCCATGGCCCACAACACGGCCTCCACGCTGGAAGCCATGCTCAGAAA 20792
|| || ||||| || ||| | || ||||| || || || |||||| | ||||| | ||
Sbjct 17011 TGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAA 17070
Query 20793 TGACACCAACGACCAGTCCTTTAATGACTACCTTTCCGCCGCCAACATGCTATACCCCAT 20852
||| ||||| |||||||| ||||| |||||| || |||||||| || | ||
Sbjct 17071 TGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTAT 17130
Query 20853 ACCCGCCAACGCCACCAAC-GTGCCCATCTCCATCCCATCGCGCAACTGGGCAGCATTTC 20911
|| || | | |||| ||||| ||||| || ||| | | || ||||| || |||
Sbjct 17131 -TCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTA 17189
Query 20912 GCGGTTGGGCCTTCACACGCTTGAAGACAA-AGGAAACCCCTTCCCTGGGATCAGGCTAC 20970
| |||||||| || || | | || |||| ||||||| || || | || || | |
Sbjct 17190 GAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTT 17248
Query 20971 GACCCTTACTACACCTACTCTGGCTCCATACCATACCTTGACGGAACCTTCTATCTTAAT 21030
||||| |||| | ||||| ||||| || || || || | ||||| ||| | |
Sbjct 17249 GACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCT 17308
Query 21031 CACACCTTTAAGAAGGTGGCCATTACCTTTGACTCTTCTGTTAGCTGGCCGGGCAACGAC 21090
||||| | | ||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct 17309 CACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGAC 17368
Query 21091 CGCCTGCTTACTCCCAATGAGTTTGAGATTAAACGCTCAGTTGACGGGGAGGGCTACAAC 21150
| || | | || ||||| ||| | || ||| | || |||| ||| ||||| |||
Sbjct 17369 AGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAAC 17428
Query 21151 GTAGCTCAGTGCAACATGACCAAGGACTGGTTCCTGGTGCAGATGTTGGCCAACTACAAT 21210
||||| ||| || || ||||| |||| || | || ||| | || ||||||||
Sbjct 17429 ACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAAT 17488
Query 21211 ATTGGCTACCAGGGCTTCTACATTCCAGAAAGCTACAAGGACCGCATGTACTCGTTCTTC 21270
|| || ||||| || || || | || | || || || | |||| || || ||
Sbjct 17489 ATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTA 17548
Query 21271 AGAAACTTCCAGCCCATGAGCCGGCAAGTGGTTGACGATACTAAATACAAGGAGTATCAG 21330
||||| || | |||||| | | ||||| || || | ||| | | |||||
Sbjct 17549 AGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAA 17608
Query 21331 CAGGTTGGAATTCTTCACCAGCATAACAACTCAGGATTCGTAGGCTACCTCGCTCCCACC 21390
| |||| || | |||||||| || ||||| || | | | | |||
Sbjct 17609 CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTT 17668
Query 21391 ATGCGCGAGGGACAGGCTTACCCCGCCAACGTGCCCTACCCACTAATAGGCAAAACCGCG 21450
||| | || || |||| ||| ||| ||| | ||| || || || || ||
Sbjct 17669 GGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCA 17728
Query 21451 GTTGACAGTATTACCCAGAAAAAGTTTCTTTGCGATCGCACCCTTTGGCGCATCCCATTC 21510
| | | | ||||| |||| ||| ||| | || || | || || ||| | || || |||
Sbjct 17729 GGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTC 17788
Query 21511 TCCAGTAACTTTATGTCCATGGGCGCACTCACAGACCTGGGCCAAAACCTTCTCTACGCC 21570
||| ||||||||||||||||| |||| ||||| ||||| ||||| | || || ||
Sbjct 17789 TCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCA 17848
Query 21571 AACTCCGCCCACGCGCTAGACATGACTTTTGAGGTGGATCCCATGGACGAGCCCACCCTT 21630
|| || || || || |||||||||| | || || ||| | ||||| || || || |
Sbjct 17849 AATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTAT 17908
Query 21631 CTTTATG-TTTTGTTTGAAGTCTTTGACGTGGTCCGTGTGCACCAGCCGCACCGCGGCGT 21689
| | ||| | | |||||||| |||||| || | | ||||| ||||| || || || ||
Sbjct 17909 C-TCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967
Query 21690 CATCGAGACCGTGTACCTGCGCACGCCCTTCTCGGCCGGCAACGCCACAACATAAA 21745
||| || | || || | || ||||| ||||| || |||||| |||||||||
Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAA 18023
Score = 159 bits (176), Expect = 8e-35
Identities = 208/288 (72%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 19833 GCCAAACAGACCCAATTACATTGCTTTCAGGGACAATTTTATTGGCCTAATGTATTATAA 19892
||||||||| || ||||| || | ||| ||||| || ||||| || |||||| ||||||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 19893 CAGCACTGGCAACATGGGTGTTCTTGCTGGTCAGGCATCGCAGCTAAATGCCGTGGTAGA 19952
||| | | |||| ||||||| | || ||||| | || ||||| ||||| || | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 19953 TTTGCAAGACAGAAACACAGAGCTGTCCTATCAACTCTTGCTTGATTCCATAGGTGATAG 20012
| ||||||||||| ||||| |||| ||||| || || | ||| || |||||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 20013 AACCAGATATTTTTCTATGTGGAATCAGGCTGTAGACAGCTATGATCCAGATGTTAGAAT 20072
||| |||||| |||||||||| || || || ||||||||||| || ||||
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 20073 CATTGAAAACCATGGAACTGAGGATGAATTGCCAAATTATTGTTTTCC 20120
||| || || |||| || || ||| | ||||||||||| |||||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Score = 104 bits (114), Expect = 5e-18
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 26924 CTTAGAAATAGGATTTTTCCCACTCTGTATGCTATATTTCAACAAAGCAGGGGCCAAGAA 26983
|| ||||||| ||| ||||| ||| |||||||||| ||||||||| || | || || ||
Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208
Query 26984 CAAGAGCTGAAAATAAAAAACAGGTCTCTGCGCTCCCTCACCCGCAGCTGCCTGTATCAC 27043
| | ||||| ||||| | || | | || || ||| ||||| || ||||||
Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268
Query 27044 AAAAGCGAAGATCAGCTTCGGCGCACGCTGGAAGACGCGGAGGCTCT 27090
|||| |||||| ||||| | | | || ||||||||||| ||||| ||
Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114787866186734
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |