Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq20 129 7e-25
seq17 125 8e-24
seq22 118 1e-21
seq190 105 8e-18
seq113 95.1 1e-14
seq83 87.8 2e-12
>seq20
Length=25211774
Score = 129 bits (142), Expect = 7e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||||||||| ||||| | || |||||||||||||| || ||||| || || ||||| |
Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| ||||| || || ||||||||||| ||||| || || || |||||||
Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600
Query 24277 CAATAAGTCTTTCTCC 24292
| | || || ||||||
Sbjct 21308601 CTACAACTCGTTCTCC 21308616
>seq17
Length=26966924
Score = 125 bits (138), Expect = 8e-24
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| ||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| ||
Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278
||||| ||||| | ||||| |||||||| ||||||| |||||||||||| ||||||||
Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGCC 9450883
Query 24279 ATAAGTCTTTCTCC 24292
| | |||||| ||
Sbjct 9450882 ACCACTCTTTCCCC 9450869
>seq22
Length=17426531
Score = 118 bits (130), Expect = 1e-21
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259
|||||||||||||||| || ||||||||||| ||||| ||||| || ||
Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
||| ||| ||||||||||| ||||| || || || || || ||||| || | | || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045
| || | |||||||| | ||| ||||||| | | || | ||| || ||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490
Score = 102 bits (112), Expect = 1e-16
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
||||||| | ||| |||||||||||||||| || || || || || || || || | |
Sbjct 1425065 CACTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGA 1425124
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || ||||| | ||||| | ||||| ||| | || || | | || ||||
Sbjct 1425125 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCA 1425184
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941
||| ||||| || || ||| | || | |||||||| |||||||| | ||||
Sbjct 1425185 GTTCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238
Score = 100 bits (110), Expect = 3e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| || ||||| |||||||||||||| | || |||||||||| |
Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || |||||||| ||||| || | ||| ||||| | | || || |||||||
Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216
Query 54145 CGGTTCCAAGTATAT 54159
||||| | ||| ||
Sbjct 1409217 AGGTTCTAGGTAAAT 1409231
>seq190
Length=3085523
Score = 105 bits (116), Expect = 8e-18
Identities = 148/207 (71%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990
||| ||||||| | |||||||||| | | ||| | | || |||||||| |||| |||
Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334
Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050
||| | || || | |||| | | ||| || ||| | | || || || | ||||||
Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394
Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 22107
|||||||||||| ||||| ||||| |||||| ||| || | |||| | || ||
Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454
Query 22108 AGACCTAGGAGCTATTCTACCATAGCA 22134
||| | ||||||| ||| ||||||||
Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481
>seq113
Length=6198913
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTAT 21989
||| ||||||| | |||||||||| | | | | | | || |||||||| |||| ||
Sbjct 4701979 TTGAACTTCTTCAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGAT 4702038
Query 21990 CCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTC 22049
| ||| | || || | ||| | | ||| ||| ||| | | || || || | |||||
Sbjct 4702039 CACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTC 4702098
Query 22050 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 22106
||||||||||||| ||||| ||||| |||||| |||||| | |||| | || |
Sbjct 4702099 CCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGC 4702158
Query 22107 CAGACCTAGGAGCTATTCTACCATAGCA 22134
|| | | ||||||| ||| ||||||||
Sbjct 4702159 CAAAACGTGGAGCTACTCTTCCATAGCA 4702186
>seq83
Length=9551901
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/207 (70%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990
||| ||||||| | |||||||||| | || | | | || |||||||| |||||||
Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911
Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050
||| | || || | ||| | | ||| ||| ||| | | || || || | || ||
Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851
Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 22107
|||||||||||| | ||| ||||| |||||| ||| || | |||| | || ||
Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791
Query 22108 AGACCTAGGAGCTATTCTACCATAGCA 22134
||| | ||||||| ||| ||||||||
Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCA 3111764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593237768846640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |