Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20 129 7e-25 seq17 125 8e-24 seq22 118 1e-21 seq190 105 8e-18 seq113 95.1 1e-14 seq83 87.8 2e-12 >seq20 Length=25211774 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | || |||||||||||||| || ||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| ||||| || || ||||||||||| ||||| || || || ||||||| Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 24277 CAATAAGTCTTTCTCC 24292 | | || || |||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 >seq17 Length=26966924 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| |||||||| ||||||| |||||||||||| |||||||| Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGCC 9450883 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 9450882 ACCACTCTTTCCCC 9450869 >seq22 Length=17426531 Score = 118 bits (130), Expect = 1e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 |||||||||||||||| || ||||||||||| ||||| ||||| || || Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| ||||||||||| ||||| || || || || || ||||| || | | || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||| ||||||| | | || | ||| || |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | ||| |||||||||||||||| || || || || || || || || | | Sbjct 1425065 CACTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGA 1425124 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || ||||| | ||||| | ||||| ||| | || || | | || |||| Sbjct 1425125 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCA 1425184 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 ||| ||||| || || ||| | || | |||||||| |||||||| | |||| Sbjct 1425185 GTTCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| || ||||| |||||||||||||| | || |||||||||| | Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216 Query 54145 CGGTTCCAAGTATAT 54159 ||||| | ||| || Sbjct 1409217 AGGTTCTAGGTAAAT 1409231 >seq190 Length=3085523 Score = 105 bits (116), Expect = 8e-18 Identities = 148/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990 ||| ||||||| | |||||||||| | | ||| | | || |||||||| |||| ||| Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334 Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050 ||| | || || | |||| | | ||| || ||| | | || || || | |||||| Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394 Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 22107 |||||||||||| ||||| ||||| |||||| ||| || | |||| | || || Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454 Query 22108 AGACCTAGGAGCTATTCTACCATAGCA 22134 ||| | ||||||| ||| |||||||| Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481 >seq113 Length=6198913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTAT 21989 ||| ||||||| | |||||||||| | | | | | | || |||||||| |||| || Sbjct 4701979 TTGAACTTCTTCAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGAT 4702038 Query 21990 CCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTC 22049 | ||| | || || | ||| | | ||| ||| ||| | | || || || | ||||| Sbjct 4702039 CACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTC 4702098 Query 22050 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 22106 ||||||||||||| ||||| ||||| |||||| |||||| | |||| | || | Sbjct 4702099 CCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGC 4702158 Query 22107 CAGACCTAGGAGCTATTCTACCATAGCA 22134 || | | ||||||| ||| |||||||| Sbjct 4702159 CAAAACGTGGAGCTACTCTTCCATAGCA 4702186 >seq83 Length=9551901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990 ||| ||||||| | |||||||||| | || | | | || |||||||| ||||||| Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911 Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050 ||| | || || | ||| | | ||| ||| ||| | | || || || | || || Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851 Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 22107 |||||||||||| | ||| ||||| |||||| ||| || | |||| | || || Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791 Query 22108 AGACCTAGGAGCTATTCTACCATAGCA 22134 ||| | ||||||| ||| |||||||| Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCA 3111764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593237768846640