Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq25 174 2e-38 seq35 107 2e-18 >seq25 Length=23434732 Score = 174 bits (192), Expect = 2e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || | |||||||||||||||||| |||||||| | || Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| |||||||| ||||| ||||| Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCAT 21720555 >seq35 Length=13989929 Score = 107 bits (118), Expect = 2e-18 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 138109 TTGAGCTTTTCCCCCAGGGAGTTCACTTTATCCTTTTCCTGGTCGGTGCTGTGGTTCTCG 138168 || ||||| || ||||||||||| || | ||| | ||| | | |||||||| Sbjct 11962692 TTCAGCTTCTCTCCCAGGGAGTTTACATGTTCCATGAT---GTCTGGACCCTGGTTCTCT 11962748 Query 138169 GCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCATCTCAGACAGGGCCTGGCAGCCC 138228 |||||||||||||| ||| || |||||||||||||||||| |||| ||| ||||| ||| Sbjct 11962749 GCCTGGGGCATCACTTCCAGCAAGTAAAACTGGATCATCTCTGACAAGGCTTGGCAACCC 11962808 Query 138229 AGGTAACCCT 138238 |||||||||| Sbjct 11962809 AGGTAACCCT 11962818 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 |||| || | ||| | ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 11960604 AGTTGTTTAGCTTCATTGTCATGTAGGCTTCTATGTAGTTGATAAAGATGTCAAACTCAC 11960663 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||| ||||||| ||||| || ||||||| Sbjct 11960664 TCATGGCTTTGTAGATGCCTTTCTCTTGGAGCT 11960696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589595939039720