Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001720.1 Length=43804 Score E Sequences producing significant alignments: (Bits) Value seq4931 113 1e-20 >seq4931 Length=27746 Score = 113 bits (124), Expect = 1e-20 Identities = 197/283 (70%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 19736 TGGTAGACCTGTTTACCAACATTGGTGCCAGATGGTCCGTGGACCAGATGGACAACGTCA 19795 ||||||| | || |||||| || |||| ||||| | || |||||||| || | Sbjct 16701 TGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTA 16760 Query 19796 ATCCCTTCAACCACCACCGTAACTGGGGGTTGAAGTACAGGTCTCAGCTGCTCGGAAACA 19855 |||| || || || ||| | || || |||| ||||||||||||||| | ||||| Sbjct 16761 ATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATG 16820 Query 19856 GCAGATACTGC--CGTTTCCATATTCAGGTGCCGCAGAAATACTTTGCCATCAAGAATCT 19913 | | || ||| | |||| |||||||||| ||||| || | ||||| | || | | | Sbjct 16821 GTCGCTA-TGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTT 16878 Query 19914 GCTCCTGTTGCCCGGCACCTACACTTACGAGTGGGTCCTCAGAAAGGATCCCAACATGAT 19973 ||| ||| | || || | |||| |||||| ||| | ||||| ||| |||||||| Sbjct 16879 GCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGAT 16938 Query 19974 TCTGCAGTCCAGCCTTGGCAACGACTTGCGCGCGGACGGCGCG 20016 | ||||| | |||||||| || || | | |||||| ||| Sbjct 16939 TTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCG 16981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139942777000156