Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001720.1
Length=43804
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 113 1e-20
>seq4931
Length=27746
Score = 113 bits (124), Expect = 1e-20
Identities = 197/283 (70%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 19736 TGGTAGACCTGTTTACCAACATTGGTGCCAGATGGTCCGTGGACCAGATGGACAACGTCA 19795
||||||| | || |||||| || |||| ||||| | || |||||||| || |
Sbjct 16701 TGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTA 16760
Query 19796 ATCCCTTCAACCACCACCGTAACTGGGGGTTGAAGTACAGGTCTCAGCTGCTCGGAAACA 19855
|||| || || || ||| | || || |||| ||||||||||||||| | |||||
Sbjct 16761 ATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATG 16820
Query 19856 GCAGATACTGC--CGTTTCCATATTCAGGTGCCGCAGAAATACTTTGCCATCAAGAATCT 19913
| | || ||| | |||| |||||||||| ||||| || | ||||| | || | | |
Sbjct 16821 GTCGCTA-TGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTT 16878
Query 19914 GCTCCTGTTGCCCGGCACCTACACTTACGAGTGGGTCCTCAGAAAGGATCCCAACATGAT 19973
||| ||| | || || | |||| |||||| ||| | ||||| ||| ||||||||
Sbjct 16879 GCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGAT 16938
Query 19974 TCTGCAGTCCAGCCTTGGCAACGACTTGCGCGCGGACGGCGCG 20016
| ||||| | |||||||| || || | | |||||| |||
Sbjct 16939 TTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCG 16981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139942777000156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |