Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq107 226 3e-54 seq62 120 4e-22 seq167 96.9 4e-15 >seq107 Length=4663594 Score = 226 bits (250), Expect = 3e-54 Identities = 253/338 (75%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || |||||||| ||| | | | ||| | ||||| ||||||||| ||| Sbjct 3522142 AGCAGAGCTTCGATGTCACCCTCTATATCGATGGTGGGAAAGCGGCGGCTGTACCGCCGC 3522083 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| | ||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 3522082 ACCGGCACCCCGTCCGGCCCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGG 3522023 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 | ||| || |||||| | | || |||||| | | || | | ||||||||| Sbjct 3522022 CTCACGGGCGACCAGATGACTAACTTGGGGTCCGTTATGAACCCTATGGGGTCGTCGCTG 3521963 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||| | || |||||||||||||| ||||| ||| | ||||| || ||| Sbjct 3521962 GGCGCGGGCAGGGCCCCCCGCAGGAAGGCGAAGAGTGGATGCGCCTTGGCACCATTCACC 3521903 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | ||||| |||||||| ||| || || ||||||| ||| Sbjct 3521902 TCGCACTTCTCGAAGAGTGTGAAGTTGGGCTCGAACCCGCCACCCGGCCGGACGTACTTG 3521843 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||| | | |||||| | |||| | ||| ||||| Sbjct 3521842 AGGGTATTTAGAATCTCGTCGTTCTCAGAGTTCTCCTG 3521805 Score = 196 bits (216), Expect = 6e-45 Identities = 168/208 (81%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| ||||||||||| || || ||||| || || | || || | Sbjct 3521599 CCTGATGTCCAAACTGGTTGCACGGGAACCCCAGGACGACCAGGCCGCGGGGCCCGAGCC 3521540 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||| ||||| | Sbjct 3521539 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCA 3521480 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||||||||||| ||| |||||| | | |||| | || ||| || || || |||| Sbjct 3521479 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCACACGGGCTCCCCGCCGG 3521420 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || |||||| ||||||| Sbjct 3521419 ACAGCGGGCGCGCCGAGAAGTCGTACAC 3521392 >seq62 Length=11239103 Score = 120 bits (132), Expect = 4e-22 Identities = 190/267 (71%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || | | Sbjct 3146452 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTCC 3146510 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 3146511 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 3146570 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | || |||| ||||| Sbjct 3146571 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCACCCGCATCAAGCTGATCCGCCACTAC 3146629 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| ||||| ||| ||||| |||||||||| ||||| ||| Sbjct 3146630 GTGCAGCTGCTCTACCCGCGGGCCAAGAACGACCGCGTGTGGACGCTGGAGTTCGTGGGC 3146689 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGC 50674 ||||||||||||||||| || ||| Sbjct 3146690 AAGCTGGACGAGCGCTGCCGCCGGCGC 3146716 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 49916 GTGTCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTT 49975 |||||||| || |||||| | || ||| |||| |||||| | |||||| |||||||||| Sbjct 3145991 GTGTCCTCCCCGGGGGAGTTTGCCGTGTTCCTCCTGCACCGGCTCTTCCCGGAGCTCTTT 3146050 Query 49976 GACGCGCGCCAGCTGCGC-CGCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCT 50034 ||| ||| ||||| || || | |||||||||||||| || || ||| ||| || Sbjct 3146051 GACCACCGCAAGCTGGGCGAGCAG-TACAGCTGCTACGGGGAGGGCGGCAAGCAGGAGCT 3146109 Query 50035 GGACCCTGCGCGCCTGCAACTGATCCGGCACTGCGTGGCGCTTTGCTTCCC 50085 |||||| ||| ||||| | ||||| ||| | || | | | |||||| Sbjct 3146110 GGACCCGCAGCGGCTGCAGATCATCCGCAACTACACGGAGATCTACTTCCC 3146160 >seq167 Length=2737994 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/202 (72%), Gaps = 12/202 (6%) Strand=Plus/Minus Query 83140 CAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATG-- 83197 || || |||||| ||||||| ||| | |||||| ||||| | || |||| ||| Sbjct 777848 CAGGAGCTTCTCAAAGTTCCCGGCTAGATCGTTGTGGCACGCAGG---CCAGCTGATGGT 777792 Query 83198 -AGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC----GGCAGGGCCT 83252 | || | ||| ||| ||||| | ||||| ||| ||| || |||||||||| Sbjct 777791 TACCTTGCAGTCTGTCATGAGCGCAGTGGAGTCGTGGCTGGGCACCCACGGGCAGGGCCT 777732 Query 83253 CTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGA 83312 | | ||||| || | ||| |||||||| | ||||| || |||| |||||||||||||| Sbjct 777731 CCTGCAGGAAAGCCA-GAGTAGATGTGCCTTGGCACCATTCACCTGGCACTTCTCGAAGA 777673 Query 83313 GCATAAAGTTCGGCTCGAAGCC 83334 | | ||||| |||||||| || Sbjct 777672 GTGTGAAGTT-GGCTCGAACCC 777652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608300683877720