Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq107 226 3e-54
seq62 120 4e-22
seq167 96.9 4e-15
>seq107
Length=4663594
Score = 226 bits (250), Expect = 3e-54
Identities = 253/338 (75%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||| || |||||||| ||| | | | ||| | ||||| ||||||||| |||
Sbjct 3522142 AGCAGAGCTTCGATGTCACCCTCTATATCGATGGTGGGAAAGCGGCGGCTGTACCGCCGC 3522083
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| ||||| | ||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 3522082 ACCGGCACCCCGTCCGGCCCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGG 3522023
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
| ||| || |||||| | | || |||||| | | || | | |||||||||
Sbjct 3522022 CTCACGGGCGACCAGATGACTAACTTGGGGTCCGTTATGAACCCTATGGGGTCGTCGCTG 3521963
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||| ||||||||| | || |||||||||||||| ||||| ||| | ||||| || |||
Sbjct 3521962 GGCGCGGGCAGGGCCCCCCGCAGGAAGGCGAAGAGTGGATGCGCCTTGGCACCATTCACC 3521903
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
||||||||||||||||| | ||||| |||||||| ||| || || ||||||| |||
Sbjct 3521902 TCGCACTTCTCGAAGAGTGTGAAGTTGGGCTCGAACCCGCCACCCGGCCGGACGTACTTG 3521843
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
|||| | | |||||| | |||| | ||| |||||
Sbjct 3521842 AGGGTATTTAGAATCTCGTCGTTCTCAGAGTTCTCCTG 3521805
Score = 196 bits (216), Expect = 6e-45
Identities = 168/208 (81%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| ||||||||||| || || ||||| || || | || || |
Sbjct 3521599 CCTGATGTCCAAACTGGTTGCACGGGAACCCCAGGACGACCAGGCCGCGGGGCCCGAGCC 3521540
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| |||||||||||| | |||||||| ||||| |
Sbjct 3521539 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCA 3521480
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
||||||||||||||| ||| |||||| | | |||| | || ||| || || || ||||
Sbjct 3521479 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCACACGGGCTCCCCGCCGG 3521420
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| |||||| || |||||| |||||||
Sbjct 3521419 ACAGCGGGCGCGCCGAGAAGTCGTACAC 3521392
>seq62
Length=11239103
Score = 120 bits (132), Expect = 4e-22
Identities = 190/267 (71%), Gaps = 4/267 (1%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| || | |
Sbjct 3146452 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTCC 3146510
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 3146511 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 3146570
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || ||||| ||| | || |||| |||||
Sbjct 3146571 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCACCCGCATCAAGCTGATCCGCCACTAC 3146629
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647
|||||| |||| ||||| ||| ||||| |||||||||| ||||| |||
Sbjct 3146630 GTGCAGCTGCTCTACCCGCGGGCCAAGAACGACCGCGTGTGGACGCTGGAGTTCGTGGGC 3146689
Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGC 50674
||||||||||||||||| || |||
Sbjct 3146690 AAGCTGGACGAGCGCTGCCGCCGGCGC 3146716
Score = 98.7 bits (108), Expect = 1e-15
Identities = 126/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 49916 GTGTCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTT 49975
|||||||| || |||||| | || ||| |||| |||||| | |||||| ||||||||||
Sbjct 3145991 GTGTCCTCCCCGGGGGAGTTTGCCGTGTTCCTCCTGCACCGGCTCTTCCCGGAGCTCTTT 3146050
Query 49976 GACGCGCGCCAGCTGCGC-CGCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCT 50034
||| ||| ||||| || || | |||||||||||||| || || ||| ||| ||
Sbjct 3146051 GACCACCGCAAGCTGGGCGAGCAG-TACAGCTGCTACGGGGAGGGCGGCAAGCAGGAGCT 3146109
Query 50035 GGACCCTGCGCGCCTGCAACTGATCCGGCACTGCGTGGCGCTTTGCTTCCC 50085
|||||| ||| ||||| | ||||| ||| | || | | | ||||||
Sbjct 3146110 GGACCCGCAGCGGCTGCAGATCATCCGCAACTACACGGAGATCTACTTCCC 3146160
>seq167
Length=2737994
Score = 96.9 bits (106), Expect = 4e-15
Identities = 145/202 (72%), Gaps = 12/202 (6%)
Strand=Plus/Minus
Query 83140 CAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATG-- 83197
|| || |||||| ||||||| ||| | |||||| ||||| | || |||| |||
Sbjct 777848 CAGGAGCTTCTCAAAGTTCCCGGCTAGATCGTTGTGGCACGCAGG---CCAGCTGATGGT 777792
Query 83198 -AGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC----GGCAGGGCCT 83252
| || | ||| ||| ||||| | ||||| ||| ||| || ||||||||||
Sbjct 777791 TACCTTGCAGTCTGTCATGAGCGCAGTGGAGTCGTGGCTGGGCACCCACGGGCAGGGCCT 777732
Query 83253 CTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGA 83312
| | ||||| || | ||| |||||||| | ||||| || |||| ||||||||||||||
Sbjct 777731 CCTGCAGGAAAGCCA-GAGTAGATGTGCCTTGGCACCATTCACCTGGCACTTCTCGAAGA 777673
Query 83313 GCATAAAGTTCGGCTCGAAGCC 83334
| | ||||| |||||||| ||
Sbjct 777672 GTGTGAAGTT-GGCTCGAACCC 777652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608300683877720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |