Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001813.1 Length=33213 Score E Sequences producing significant alignments: (Bits) Value seq4931 163 6e-36 >seq4931 Length=27746 Score = 163 bits (180), Expect = 6e-36 Identities = 504/770 (65%), Gaps = 20/770 (3%) Strand=Plus/Plus Query 16059 CAATATTGGCGCTAGGTGGTCTTTGGATGTAATGGATGAAATTAATCCTTTCAACCACCA 16118 ||| || || | |||||||| | ||||| ||||| ||||||| || || || || Sbjct 16717 CAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCA 16776 Query 16119 TAGAAATTTGGGATTGAAGTACAGAAGTCAGCTGTTGGGCAATGGCAGATATTGTAAATT 16178 |||||| || |||| |||||| |||||| || || ||||| | ||| | || Sbjct 16777 CAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTT 16836 Query 16179 CCATATCCAAGTACCACAGAAATTCTTTGCGCTTCGCAATTTGTTGCTGCTGTCTGGCAC 16238 ||||| || || || || || || ||||| ||| | |||| | ||||| | || | Sbjct 16837 TCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATC 16896 Query 16239 ATACAATTATGAGTGGTACTTTAGAAAAGACCCTAACATGATTTTGCAGAGTACGCTTGG 16298 |||| ||| || |||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 16897 GTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGG 16956 Query 16299 CAATGACTTGAGAGCAGATGGAGCCTCTGTAACTTATACTAGCATTAATTTGTATGTGGC 16358 |||||| |||| | || ||||| || ||||| | | ||||||| | | || | Sbjct 16957 CAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTAC 17016 Query 16359 ATTTTTTCCTCTCGCTTATGATACTGTAAGCGAGCTGGAATTGATGCTGCGTAACGCGAC 16418 || ||||| | || || | |||| |||||| ||||| || || | | Sbjct 17017 TTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076 Query 16419 TAACGATCAGAATTTTTCTGATTATCTTGGCGCTGTTAATAATCTGTATCAGATTCCAGC 16478 |||||||||| || || |||||| | ||||| | || ||| ||||| | Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCC 17136 Query 16479 -CAACAGTACGAGCGTTGTGGTCAATGTCCCTGATAGATCTTGGGGAGCTTTTCGAGGTT 16537 || || || | || || | | || | || ||||| || ||| |||||| Sbjct 17137 GCATCA-AACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195 Query 16538 GGTCGTTTACTAGAATTAAAGCTAGA-GAGACGCCAGCAATTGGAGCCACAAAAGATCCG 16596 || | |||||||| | |||| | | | || || ||| | ||||| | || || || Sbjct 17196 GGGCATTTACTAG-ACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCA 17254 Query 16597 AATTTCACATATTCAGGATCAATTCCCCTGTT-GGATGGCACATTTTACCTTTCTCATAC 16655 | || | || || || |||| |||| | || ||||| || ||||| | ||||| || Sbjct 17255 TACTTTAGGTACTCGGGCTCAA-TCCCGTATTGGGATGCGACCTTTTATTTATCTCACAC 17313 Query 16656 TTTTAACAGGGTTTCTATTCAGTGGGATTC--CAGT--GTTCCCTGGCCTGGAAATGACA 16711 | | | | ||| | || |||| ||||| |||| || |||||||||||||||| Sbjct 17314 TATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGT----TGGCCTGGAAATGACA 17369 Query 16712 GATTGCTTACGCCAAATTGGTTTGAAATTAAACGCAATGTTAACGCTGATCCAGAAGGTT 16771 || | | | || ||| ||| | || ||| | | || ||| | ||||| | Sbjct 17370 GACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACG------CGGAAGGCT 17423 Query 16772 ATACAATGTCACAAAGTTCTATCACCAAGGACTGGTTTATGGTGCAAATG 16821 ||| | || || || || || ||||| |||| |||| | |||||| Sbjct 17424 ATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATG 17473 Score = 98.7 bits (108), Expect = 2e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 5492 GCCAAATGGCATTGGGTGGGTAAGAGCACTTGCATACATTCCACATATGTCATACACATA 5551 |||||| ||||| || || || | || || ||||||||||| | || ||||| ||||| Sbjct 6053 GCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAAACATA 6112 Query 5552 AATGGGTCCTTCATATACACCAAGGTAAGAGGGGTAGCACCTTCCCCCTCGGACACTTT 5610 ||| ||| | ||| | ||||| | ||||| ||||||||||| |||||||| || |||| Sbjct 6113 AATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTT 6171 Score = 86.0 bits (94), Expect = 1e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 14877 TTTCAAAGCCAGATTTACCCTAAATGTGGGTGATAACAGGATTGTGGATATGGGTAGCAG 14936 ||| |||||| ||||| || | || ||||||||||| || | ||| ||||||| || Sbjct 15550 TTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAG 15609 Query 14937 CTACTTCGACATCCAGGGCATCTTGGACAGAGGACCATCTTTCAAACCATACCGCGGCAC 14996 || || || || |||| | | |||||||| || ||||| ||||| ||| | ||||| Sbjct 15610 TTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCAC 15669 Query 14997 AGCTTACAAT 15006 ||| |||||| Sbjct 15670 AGCATACAAT 15679 Score = 84.2 bits (92), Expect = 5e-12 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 5031 TTTTTGTTGTCTAGCCGTGTTGCGAAGGAGCCGTATAAGGCATTGGAAAGTAATTTACTG 5090 ||||| || |||| || || || ||||| ||||| | || || || | | |||| | Sbjct 5595 TTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCG 5654 Query 5091 ATGCTTCGCTGAGTCATGTTTTTGTCTTTGTCTGCTTTCTCTTTTGCTGCTATGTTAATG 5150 ||||||||||| || |||| | || ||| || || ||||||||| ||||| ||| || Sbjct 5655 ATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTATATTAGTG 5714 Query 5151 CTCACGTATTCTTTAGTGATGCATTTCCACT 5181 ||||||||| | | | ||| ||||||| Sbjct 5715 GCTACGTATTCTCTTGCCACGCAATTCCACT 5745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106077814444550