Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001813.1
Length=33213
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 163 6e-36
>seq4931
Length=27746
Score = 163 bits (180), Expect = 6e-36
Identities = 504/770 (65%), Gaps = 20/770 (3%)
Strand=Plus/Plus
Query 16059 CAATATTGGCGCTAGGTGGTCTTTGGATGTAATGGATGAAATTAATCCTTTCAACCACCA 16118
||| || || | |||||||| | ||||| ||||| ||||||| || || || ||
Sbjct 16717 CAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCA 16776
Query 16119 TAGAAATTTGGGATTGAAGTACAGAAGTCAGCTGTTGGGCAATGGCAGATATTGTAAATT 16178
|||||| || |||| |||||| |||||| || || ||||| | ||| | ||
Sbjct 16777 CAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTT 16836
Query 16179 CCATATCCAAGTACCACAGAAATTCTTTGCGCTTCGCAATTTGTTGCTGCTGTCTGGCAC 16238
||||| || || || || || || ||||| ||| | |||| | ||||| | || |
Sbjct 16837 TCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATC 16896
Query 16239 ATACAATTATGAGTGGTACTTTAGAAAAGACCCTAACATGATTTTGCAGAGTACGCTTGG 16298
|||| ||| || |||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 16897 GTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGG 16956
Query 16299 CAATGACTTGAGAGCAGATGGAGCCTCTGTAACTTATACTAGCATTAATTTGTATGTGGC 16358
|||||| |||| | || ||||| || ||||| | | ||||||| | | || |
Sbjct 16957 CAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTAC 17016
Query 16359 ATTTTTTCCTCTCGCTTATGATACTGTAAGCGAGCTGGAATTGATGCTGCGTAACGCGAC 16418
|| ||||| | || || | |||| |||||| ||||| || || | |
Sbjct 17017 TTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076
Query 16419 TAACGATCAGAATTTTTCTGATTATCTTGGCGCTGTTAATAATCTGTATCAGATTCCAGC 16478
|||||||||| || || |||||| | ||||| | || ||| ||||| |
Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCC 17136
Query 16479 -CAACAGTACGAGCGTTGTGGTCAATGTCCCTGATAGATCTTGGGGAGCTTTTCGAGGTT 16537
|| || || | || || | | || | || ||||| || ||| ||||||
Sbjct 17137 GCATCA-AACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195
Query 16538 GGTCGTTTACTAGAATTAAAGCTAGA-GAGACGCCAGCAATTGGAGCCACAAAAGATCCG 16596
|| | |||||||| | |||| | | | || || ||| | ||||| | || || ||
Sbjct 17196 GGGCATTTACTAG-ACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCA 17254
Query 16597 AATTTCACATATTCAGGATCAATTCCCCTGTT-GGATGGCACATTTTACCTTTCTCATAC 16655
| || | || || || |||| |||| | || ||||| || ||||| | ||||| ||
Sbjct 17255 TACTTTAGGTACTCGGGCTCAA-TCCCGTATTGGGATGCGACCTTTTATTTATCTCACAC 17313
Query 16656 TTTTAACAGGGTTTCTATTCAGTGGGATTC--CAGT--GTTCCCTGGCCTGGAAATGACA 16711
| | | | ||| | || |||| ||||| |||| || ||||||||||||||||
Sbjct 17314 TATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGT----TGGCCTGGAAATGACA 17369
Query 16712 GATTGCTTACGCCAAATTGGTTTGAAATTAAACGCAATGTTAACGCTGATCCAGAAGGTT 16771
|| | | | || ||| ||| | || ||| | | || ||| | ||||| |
Sbjct 17370 GACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACG------CGGAAGGCT 17423
Query 16772 ATACAATGTCACAAAGTTCTATCACCAAGGACTGGTTTATGGTGCAAATG 16821
||| | || || || || || ||||| |||| |||| | ||||||
Sbjct 17424 ATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATG 17473
Score = 98.7 bits (108), Expect = 2e-16
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 5492 GCCAAATGGCATTGGGTGGGTAAGAGCACTTGCATACATTCCACATATGTCATACACATA 5551
|||||| ||||| || || || | || || ||||||||||| | || ||||| |||||
Sbjct 6053 GCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAAACATA 6112
Query 5552 AATGGGTCCTTCATATACACCAAGGTAAGAGGGGTAGCACCTTCCCCCTCGGACACTTT 5610
||| ||| | ||| | ||||| | ||||| ||||||||||| |||||||| || ||||
Sbjct 6113 AATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTT 6171
Score = 86.0 bits (94), Expect = 1e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 14877 TTTCAAAGCCAGATTTACCCTAAATGTGGGTGATAACAGGATTGTGGATATGGGTAGCAG 14936
||| |||||| ||||| || | || ||||||||||| || | ||| ||||||| ||
Sbjct 15550 TTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAG 15609
Query 14937 CTACTTCGACATCCAGGGCATCTTGGACAGAGGACCATCTTTCAAACCATACCGCGGCAC 14996
|| || || || |||| | | |||||||| || ||||| ||||| ||| | |||||
Sbjct 15610 TTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCAC 15669
Query 14997 AGCTTACAAT 15006
||| ||||||
Sbjct 15670 AGCATACAAT 15679
Score = 84.2 bits (92), Expect = 5e-12
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 5031 TTTTTGTTGTCTAGCCGTGTTGCGAAGGAGCCGTATAAGGCATTGGAAAGTAATTTACTG 5090
||||| || |||| || || || ||||| ||||| | || || || | | |||| |
Sbjct 5595 TTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCG 5654
Query 5091 ATGCTTCGCTGAGTCATGTTTTTGTCTTTGTCTGCTTTCTCTTTTGCTGCTATGTTAATG 5150
||||||||||| || |||| | || ||| || || ||||||||| ||||| ||| ||
Sbjct 5655 ATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTATATTAGTG 5714
Query 5151 CTCACGTATTCTTTAGTGATGCATTTCCACT 5181
||||||||| | | | ||| |||||||
Sbjct 5715 GCTACGTATTCTCTTGCCACGCAATTCCACT 5745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 106077814444550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |