Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq66 145 6e-30 seq147 109 5e-19 seq36 89.7 4e-13 >seq66 Length=5789316 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| |||| |||||||||||| || ||||| ||||| | |||||| || | || Sbjct 2649880 GAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 2649821 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||||||| | || || ||||||||||| ||| | |||||||||||| Sbjct 2649820 TTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 2649761 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | ||| || |||| ||||||| |||| ||| ||||| Sbjct 2649760 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2649701 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || || || || ||||| Sbjct 2649700 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | |||||||| |||| |||||||||||| || ||||| ||||| | | Sbjct 2649666 CCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649607 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || | |||||||| || || Sbjct 2649606 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGT 2649547 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || |||| ||||||| Sbjct 2649546 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649487 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | || || ||||| || |||||| Sbjct 2649486 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439 >seq147 Length=2532799 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| |||||||| || || ||||| ||||| | || || || | || Sbjct 2384161 GAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 2384102 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| || | || || ||||||||||| || | ||| || || || Sbjct 2384101 TTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATC 2384042 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | | ||||||| ||||||| |||| ||||||||| Sbjct 2384041 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGT 2383982 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | || || || || || ||||| Sbjct 2383981 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| ||||||||||| || ||||| ||||| | Sbjct 2383947 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2383888 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| || | || || ||||||||||| || Sbjct 2383887 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2383828 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || || || |||||| ||||| | | | ||||||| |||||| Sbjct 2383827 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACC 2383768 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | || ||||||||||| || || || || || || || |||||| ||| Sbjct 2383767 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTCTGA 2383716 >seq36 Length=17049061 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| | | | || ||||| || || ||||| ||||| | || || ||| | || Sbjct 7362823 GAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATC 7362882 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||| ||| ||||| || | || || ||||||||||| || | ||| || || || Sbjct 7362883 TTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATC 7362942 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | | |||||| ||||||| |||| | ||||||| Sbjct 7362943 CTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGT 7363002 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||||||| | || || | || || |||||| || Sbjct 7363003 CTTGCCGGTCAGGGTCTTCATGAAGATCTGCATTCTG 7363039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421923698307188