Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq66 143 3e-29
seq147 123 3e-23
seq91 96.9 4e-15
seq36 93.3 4e-14
seq20 93.3 4e-14
>seq66
Length=5789316
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 2649668 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2649727
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| || ||||| ||| | ||||||
Sbjct 2649728 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2649787
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| |||||||| |||||||| || | || ||||| |||||||||
Sbjct 2649788 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649847
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| ||||| || ||| | || |||||||| ||
Sbjct 2649848 ATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTTTGAGGGGAGG 2649894
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || || || ||||| ||||||||| | || || || |||
Sbjct 2649439 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 2649498
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | |||||| || || | ||||| |||||||| || | || ||
Sbjct 2649499 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCA 2649558
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| || ||||| |||||||| || | || ||||| ||||||||
Sbjct 2649559 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 2649618
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||||| |||| ||||| || |||
Sbjct 2649619 CATCCAGAAGGAGTCCACTCTGCACCTGGTG 2649649
>seq147
Length=2532799
Score = 123 bits (136), Expect = 3e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || || | || ||||| |||||||| | || || || |||
Sbjct 2383720 AATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAG 2383779
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | | | |||| || || | || |||||||||||||| | |||||
Sbjct 2383780 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCTGACCA 2383839
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| ||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 2383840 GCAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 2383899
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| |||| ||||| || || |||| |||| || ||
Sbjct 2383900 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 2383947
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||| ||| | || || || |||
Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | || |||||||||||||| | ||||||
Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| ||| ||||| |||||||| || | ||||| || |||||||||
Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| |||| ||||| || || | || | ||||| |||
Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGTTCTCCGTCTCAGGGGTGGC 2384176
>seq91
Length=4965619
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||| | ||||| || ||||| ||||||||||| || | || ||| || |
Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | || ||| | |||| || || | || || || || || | | || |||
Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||| |||| |||| || || || |||||||| || | | || | |||||||||
Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
||||| |||||| |||| || |||||||| |||
Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTG 1585563
>seq36
Length=17049061
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||| | || || || || ||||| ||||| | | | || || || |||
Sbjct 7363036 AATGCAGATCTTCATGAAGACCCTGACCGGCAAGACCATTATCCTGGAGGTGGAGCCCAT 7362977
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | | | |||| || || | || ||||||||||| || | |||||
Sbjct 7362976 TGATACCATTGAGAAAGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCA 7362917
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| ||| ||||| ||| |||| || | | ||| || ||||||||
Sbjct 7362916 GCAGAGGCTGATCTTCGCAGGCAAGCAGGTGGAAGATGGCCACACTCTTTCTGACTACAA 7362857
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||| ||| | || || | ||| || | || | |||||||||
Sbjct 7362856 CATCCAGAAAGAGTCTACCCTTCGTCTGGTTCTCCGTCTCAGGGGCGGC 7362808
>seq20
Length=25211774
Score = 93.3 bits (102), Expect = 4e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| ||||||||| | || ||||||||||| || ||| | || || || |||||| |||
Sbjct 21312309 GAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTGGTCTTTCCAATCGAATACCACGAC 21312250
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||| || ||||||||||| || || ||||| | |||||||| || |
Sbjct 21312249 ATTTGGCAGATGTATAAGAAGGCCGAGGCTTCCTTTTGGACAGCTGAGGAGGTAATCCCG 21312190
Query 116696 TCCA 116699
||||
Sbjct 21312189 TCCA 21312186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514799341433680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |