Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq66 105 6e-18
seq147 102 7e-17
>seq66
Length=5789316
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || || |||||||| || || || || ||| ||
Sbjct 2649649 CACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTC 2649590
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || |||| | | ||||||||| || |||||||||||||||||
Sbjct 2649589 CAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCCTG 2649530
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||| || ||| ||||| | ||| | || ||
Sbjct 2649529 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTT 2649470
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATT 118746
||| ||||| || || ||||| |||||||| | ||||
Sbjct 2649469 GCCAGTCAGGGTCTTCACAAAGATCTGCATTGTCTATT 2649432
>seq147
Length=2532799
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || |||||||| || | |||||| ||| ||
Sbjct 2384157 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 2384098
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| |||| || | |||||| |||||||| |||||||| || ||
Sbjct 2384097 AGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGG 2384038
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | ||| || || ||| ||||| | ||| | || |||
Sbjct 2384037 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTG 2383978
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || || ||||||||
Sbjct 2383977 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433485704529556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |