Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_002501.1 Length=26163 Score E Sequences producing significant alignments: (Bits) Value seq4931 113 8e-21 >seq4931 Length=27746 Score = 113 bits (124), Expect = 8e-21 Identities = 497/768 (65%), Gaps = 19/768 (2%) Strand=Plus/Plus Query 15069 ATGGATAATGTCAACCCTTTTAATCATCATAAAAACAGGGGTTTAAAATACCGGTCTGAA 15128 ||||| | || || || ||||||||||| | ||| | ||||| | ||| ||||| | Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807 Query 15129 CTGCTGGGCAATGGTAGAATTGCAAAATTTCACATTCAAGTGCCCCAGAAGTTCTTTGCT 15188 || | || |||||| | ||| ||||| ||||| || || || ||||| ||||| Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867 Query 15189 ATTAAGAAACTTCTCTTAT--TGCCAGGGACCTACACGTATGAGTGGTGGTTTAGAAAGG 15246 ||| ||| || ||| | | || || | |||| || || |||| |||||||| | Sbjct 16868 CTTA--AAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAG 16925 Query 15247 ACCCAAACATGGTGTTACAGAGTTCTCTAGGTAATGATTTAAGACTAGATGGTGCAACAA 15306 | ||||||| | || |||||| |||| || |||||| | || || || || || Sbjct 16926 ATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAG 16985 Query 15307 T-TCAGTACACATCAATTAATCTGTTTGCTAGTTTTTTCCCCATGGATCATGCAACTTGC 15365 | || | ||| | |||| || ||||||| ||| || || ||| |||| ||| Sbjct 16986 TAACATTTGACAGC-ATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCT 17044 Query 15366 AATGATCTCATTTTAATGCTAAGAAATGAGACAAATGATCAGTCCTTTATGGACTA-CAT 15424 | ||| ||||| | |||||| || ||||||||||| ||||| | | Sbjct 17045 TCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTT 17104 Query 15425 GGGAG-GTAAAAACAATTTGTATGTTGTGCCTCC-CAACACAGAGAACTTGCAAATTGAA 15482 || || |||| | |||| | | ||||| || || | | | ||| || Sbjct 17105 TCCAGCGT--TAACATGCTTTATGCTATTCCTCCGCATCAAACA-ACAGTGCCTATCTCT 17161 Query 15483 ATACCTAGC-CGTACTTGGGAAGCTTTCAGAGGGTGGAGTTTTAACCGACTGAAAACAGC 15541 || || ||| | | ||||| || || ||||| ||| |||| |||| |||||| | Sbjct 17162 ATTCC-AGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAAC 17219 Query 15542 -TGAAACACCCTCAGTGTGGTCTACATACGATGTCAATTTCAAGTATTCTGGCAGCATCC 15600 |||||||| | | | ||| ||| || | || | ||| || ||| |||| Sbjct 17220 AGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCC 17279 Query 15601 CGTATCTGGATGGAAGTTTTTATTTGAGTCACACTTTTAAAAATATAGCTATCAATTTTG 15660 ||||| ||||| | |||||||| ||||||| | | ||| | || || | |||| Sbjct 17280 CGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTG 17339 Query 15661 ATTCTGCTGTGCCATGGCCTGGTAATGACCGTATGTTAGTTCCAAATTATTTTGAGATTA 15720 ||||| | || |||||||| |||||| | | ||| | || ||| | ||| | || | Sbjct 17340 ATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAA 17399 Query 15721 AAAGAACAGGCCCGGATTCTGAAGGCTATTGTGTGGCTCAAAGTAATATGACAAAAGATT 15780 |||| | ||| ||| | ||||||||| |||| || | || || || |||| Sbjct 17400 AAAG-AGAGG--TGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATT 17456 Query 15781 GGTTCCTGGTCCAAATGTCAGGAAATTACAATCAGGGATACCATGGTT 15828 ||| || | |||||| | | |||||| |||||||| |||| Sbjct 17457 GGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTT 17504 Score = 105 bits (116), Expect = 1e-18 Identities = 234/351 (67%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 13649 CTTTCATATAGCGGGACGTGATGCATCAGAATATCTTTCTGAAAATTTGATTGACTTTAT 13708 ||| ||||| || |||| ||||| ||||||||| | ||| ||| | | ||| Sbjct 15349 CTTACATATCGCAGGACAAGATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGC 15408 Query 13709 GAGCAGCACCGAATCTTACTTCTCCATAAATAAAAAATTTAGGGAAACCATAGTAGCACC 13768 ||| |||||| | ||||| ||| ||| | |||||||| | | | || || || Sbjct 15409 AAGCGCAACCGAAACGTACTTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCC 15468 Query 13769 GACAAAGGGAGTCACCTCTGAACAATCTCAAAGACTGCAAGTTCGAATTATCCCTGTTCA 13828 |||| | | || || | ||| ||| || ||||| ||| | || || | || | | Sbjct 15469 GACACACGATGTAACTACGGAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGA 15528 Query 13829 AACGCAAGATGCAGAGCAAACTTACACAGCTAGATTCACAATTGCGGTCGGCGAGGGGAG 13888 || ||||| || || | |||| | ||| |||| | | | ||||| || || Sbjct 15529 AAAAGAAGATACACAGTATACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAG 15588 Query 13889 AGTTTTGGACATGGGGAGCACTTACTTTGATATTAGGGGAATAGTTGATAGGGGTCCGTC 13948 | | || || |||| || | ||| |||||||| | ||||| | || || ||||| || Sbjct 15589 AATATTAGATTTGGGTAGTAGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTC 15648 Query 13949 ATTTAAACCTTACAGTGGGACAGCTTATAACAGTTTAGCTCCAAAATCAGC 13999 ||||||||||||||||| ||||| || || | | || || |||||||| Sbjct 15649 TTTTAAACCTTACAGTGGCACAGCATACAATAACCTTGCCCCGAAATCAGC 15699 Score = 95.1 bits (104), Expect = 2e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 16032 GGTCATCCTTATCCCTGTAACTGGCCATATCCTTTAATAGGTAGCCAAGCTGTTGCCAGT 16091 || ||||||||||||||||||||||| | || | || || || || | | | Sbjct 17678 GGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACC 17737 Query 16092 GTTACTCACAGAAAATTTTTGTGCGATAAATATCTTTGGAACATTCCATTCAGTTCTAAC 16151 ||||||| ||||||||||| || || | | || |||| ||||| ||| || ||| Sbjct 17738 ATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797 Query 16152 TTTATGAACATGGGAGAACTCACTGATTTGGGCCAGAGCTTGTTATACACAAATTCATCT 16211 |||||| ||||||| ||| || ||| |||| || | ||| |||| |||||||| || Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857 Query 16212 CA 16213 || Sbjct 17858 CA 17859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83540180404234