Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_002501.1
Length=26163
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 113 8e-21
>seq4931
Length=27746
Score = 113 bits (124), Expect = 8e-21
Identities = 497/768 (65%), Gaps = 19/768 (2%)
Strand=Plus/Plus
Query 15069 ATGGATAATGTCAACCCTTTTAATCATCATAAAAACAGGGGTTTAAAATACCGGTCTGAA 15128
||||| | || || || ||||||||||| | ||| | ||||| | ||| ||||| |
Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807
Query 15129 CTGCTGGGCAATGGTAGAATTGCAAAATTTCACATTCAAGTGCCCCAGAAGTTCTTTGCT 15188
|| | || |||||| | ||| ||||| ||||| || || || ||||| |||||
Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867
Query 15189 ATTAAGAAACTTCTCTTAT--TGCCAGGGACCTACACGTATGAGTGGTGGTTTAGAAAGG 15246
||| ||| || ||| | | || || | |||| || || |||| |||||||| |
Sbjct 16868 CTTA--AAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAG 16925
Query 15247 ACCCAAACATGGTGTTACAGAGTTCTCTAGGTAATGATTTAAGACTAGATGGTGCAACAA 15306
| ||||||| | || |||||| |||| || |||||| | || || || || ||
Sbjct 16926 ATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAG 16985
Query 15307 T-TCAGTACACATCAATTAATCTGTTTGCTAGTTTTTTCCCCATGGATCATGCAACTTGC 15365
| || | ||| | |||| || ||||||| ||| || || ||| |||| |||
Sbjct 16986 TAACATTTGACAGC-ATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCT 17044
Query 15366 AATGATCTCATTTTAATGCTAAGAAATGAGACAAATGATCAGTCCTTTATGGACTA-CAT 15424
| ||| ||||| | |||||| || ||||||||||| ||||| | |
Sbjct 17045 TCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTT 17104
Query 15425 GGGAG-GTAAAAACAATTTGTATGTTGTGCCTCC-CAACACAGAGAACTTGCAAATTGAA 15482
|| || |||| | |||| | | ||||| || || | | | ||| ||
Sbjct 17105 TCCAGCGT--TAACATGCTTTATGCTATTCCTCCGCATCAAACA-ACAGTGCCTATCTCT 17161
Query 15483 ATACCTAGC-CGTACTTGGGAAGCTTTCAGAGGGTGGAGTTTTAACCGACTGAAAACAGC 15541
|| || ||| | | ||||| || || ||||| ||| |||| |||| |||||| |
Sbjct 17162 ATTCC-AGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAAC 17219
Query 15542 -TGAAACACCCTCAGTGTGGTCTACATACGATGTCAATTTCAAGTATTCTGGCAGCATCC 15600
|||||||| | | | ||| ||| || | || | ||| || ||| ||||
Sbjct 17220 AGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCC 17279
Query 15601 CGTATCTGGATGGAAGTTTTTATTTGAGTCACACTTTTAAAAATATAGCTATCAATTTTG 15660
||||| ||||| | |||||||| ||||||| | | ||| | || || | ||||
Sbjct 17280 CGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTG 17339
Query 15661 ATTCTGCTGTGCCATGGCCTGGTAATGACCGTATGTTAGTTCCAAATTATTTTGAGATTA 15720
||||| | || |||||||| |||||| | | ||| | || ||| | ||| | || |
Sbjct 17340 ATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAA 17399
Query 15721 AAAGAACAGGCCCGGATTCTGAAGGCTATTGTGTGGCTCAAAGTAATATGACAAAAGATT 15780
|||| | ||| ||| | ||||||||| |||| || | || || || ||||
Sbjct 17400 AAAG-AGAGG--TGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATT 17456
Query 15781 GGTTCCTGGTCCAAATGTCAGGAAATTACAATCAGGGATACCATGGTT 15828
||| || | |||||| | | |||||| |||||||| ||||
Sbjct 17457 GGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTT 17504
Score = 105 bits (116), Expect = 1e-18
Identities = 234/351 (67%), Gaps = 0/351 (0%)
Strand=Plus/Plus
Query 13649 CTTTCATATAGCGGGACGTGATGCATCAGAATATCTTTCTGAAAATTTGATTGACTTTAT 13708
||| ||||| || |||| ||||| ||||||||| | ||| ||| | | |||
Sbjct 15349 CTTACATATCGCAGGACAAGATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGC 15408
Query 13709 GAGCAGCACCGAATCTTACTTCTCCATAAATAAAAAATTTAGGGAAACCATAGTAGCACC 13768
||| |||||| | ||||| ||| ||| | |||||||| | | | || || ||
Sbjct 15409 AAGCGCAACCGAAACGTACTTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCC 15468
Query 13769 GACAAAGGGAGTCACCTCTGAACAATCTCAAAGACTGCAAGTTCGAATTATCCCTGTTCA 13828
|||| | | || || | ||| ||| || ||||| ||| | || || | || | |
Sbjct 15469 GACACACGATGTAACTACGGAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGA 15528
Query 13829 AACGCAAGATGCAGAGCAAACTTACACAGCTAGATTCACAATTGCGGTCGGCGAGGGGAG 13888
|| ||||| || || | |||| | ||| |||| | | | ||||| || ||
Sbjct 15529 AAAAGAAGATACACAGTATACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAG 15588
Query 13889 AGTTTTGGACATGGGGAGCACTTACTTTGATATTAGGGGAATAGTTGATAGGGGTCCGTC 13948
| | || || |||| || | ||| |||||||| | ||||| | || || ||||| ||
Sbjct 15589 AATATTAGATTTGGGTAGTAGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTC 15648
Query 13949 ATTTAAACCTTACAGTGGGACAGCTTATAACAGTTTAGCTCCAAAATCAGC 13999
||||||||||||||||| ||||| || || | | || || ||||||||
Sbjct 15649 TTTTAAACCTTACAGTGGCACAGCATACAATAACCTTGCCCCGAAATCAGC 15699
Score = 95.1 bits (104), Expect = 2e-15
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 16032 GGTCATCCTTATCCCTGTAACTGGCCATATCCTTTAATAGGTAGCCAAGCTGTTGCCAGT 16091
|| ||||||||||||||||||||||| | || | || || || || | | |
Sbjct 17678 GGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACC 17737
Query 16092 GTTACTCACAGAAAATTTTTGTGCGATAAATATCTTTGGAACATTCCATTCAGTTCTAAC 16151
||||||| ||||||||||| || || | | || |||| ||||| ||| || |||
Sbjct 17738 ATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797
Query 16152 TTTATGAACATGGGAGAACTCACTGATTTGGGCCAGAGCTTGTTATACACAAATTCATCT 16211
|||||| ||||||| ||| || ||| |||| || | ||| |||| |||||||| ||
Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857
Query 16212 CA 16213
||
Sbjct 17858 CA 17859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 83540180404234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |