Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq11 1177 0.0
seq40 131 1e-25
>seq11
Length=20748735
Score = 1177 bits (1304), Expect = 0.0
Identities = 1158/1491 (78%), Gaps = 48/1491 (3%)
Strand=Plus/Minus
Query 107157 CTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGGAGTTGAACTT-- 107214
|||| |||||||||| | |||||| || || ||| | |||| | ||||||||| |||
Sbjct 6673186 CTGAAGATATTTGTCCAGAGAAGAAATACATGTTTGCTATCAGTTTGGAGTTGACCTTCC 6673127
Query 107215 ---GA----TGTTCTGGATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC 107267
|| || || || | ||||||||| ||| |||| |||||||| |||| | ||
Sbjct 6673126 TGGGAACTTTGCTCATGACTGGTTTGTAATCGAAG-CATTCTGTTCTGTTTAAGG-TGTC 6673069
Query 107268 CTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGG 107327
| ||| ||| ||| ||| || | ||| || ||| |||||||
Sbjct 6673068 CA--TCCTCCT---CTG----------CTCATGGTTTCCAATTCCAGGAAGATGATCCCA 6673024
Query 107328 TGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTG 107387
|||||||| || || || | |||| |||||||| |||||| ||||||||| ||
Sbjct 6673023 TGGAAGAAA---CTGTGTGGGCGCTATCACATGTGGGCCATGGGCTTTTATATGCTGTTG 6672967
Query 107388 GCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTG 107447
||| | ||| |||||| |||||| ||||| || | |||||| | || |||
Sbjct 6672966 GCCATCGTTGCTCTGAAACTTTCTCTCAGATTAAGGTGTGATTTGGA---CTT------- 6672917
Query 107448 GAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTG 107507
||| || || ||||| ||| |||| | ||| || |||||||| |||||||||
Sbjct 6672916 -----CAGAGAATTTCAGAGCCAGGACTGCAAGGATATCTTGTACAAGTCCCTGAAGCTC 6672862
Query 107508 CCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTC 107567
||||||||||| |||||||||||||| || ||||| |||||||||||||| |||||| ||
Sbjct 6672861 CCAGCAAAGAGTTCCATCAACTGTTCAGGAATCACTCGAGGGGACCAGGAGGCAGTGATC 6672802
Query 107568 CAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTAT 107627
|| || | || |||| |||||| | ||||| |||||| |||| | || | |
Sbjct 6672801 CAAGCTGTTCTGAACAATCTGGAAATCAAGAAGAAGCGGGAGCCTTTTACAGATGAGGAC 6672742
Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687
||| | |||||| ||||||||| ||| ||| | ||||||| ||||| ||||||
Sbjct 6672741 TACATTGCTGGGACCAGAAACTGTGAGCTCTTTAAGACTGAAAGGAAATTCATCCAGTTC 6672682
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|||||||| ||||||||| || ||||||| ||||| |||||||||||||| |||||||||
Sbjct 6672681 CCACTGAGCAAAGAAGAGTTAAACTTCCCTATTGCATACTCGATGGTGGTTCATGAGAAG 6672622
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 6672621 ATTGAAAACTTCGAAAGGCTGCTGAGAGCTGTGTATGCCCCTCAGAACATATACTGTATC 6672562
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| |||||| ||||||| ||||||| |||| || ||| || | ||||||| ||| |||
Sbjct 6672561 CATGTGGATCTGAAGTCTCCAGAGAGTTTCCAAATGGCAGTGAGGGCCATTGCTTCATGC 6672502
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|||| ||||||||||| ||||||||| |||| || ||| |||||||||| |||||||||
Sbjct 6672501 TTCCAAAATGTCTTCATAGCCAGTAAGCTGGTTCCAGTGATTTATGCCTCATGGTCCAGA 6672442
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987
|||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||| ||
Sbjct 6672441 GTGCAAGCTGACCTGAACTGCATGAAAGACTTGCTCCAGAGCCCAGTGCCTTGGAAATAT 6672382
Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047
|| ||||||||||| ||||||||||| || |||||||||||||| |||||| ||| ||||
Sbjct 6672381 TTCCTGAATACATGTGGGACAGACTTTCCTATAAAGACCAATGCTGAGATGATCCAGGCC 6672322
Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107
|| ||| | ||||| || || |||||||||||||| ||||||||| ||||| |||||||
Sbjct 6672321 CTGAAGCTTTTGAATGGGAAAAACAGTATGGAGTCAGAGGTACCTCCTGAGCACAAAAAA 6672262
Query 108108 aaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAG 108167
| ||||||||||||| | | |||||| ||||| || | |||| ||| ||||
Sbjct 6672261 ATCCGCTGGAAATACCATTTTCAGGTGAGAGACAAGATGCAGATAACCATGGAGAGGAAG 6672202
Query 108168 GACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGA 108227
|||||| || ||||| || | || ||| | |||||||| ||| | ||||| ||||||
Sbjct 6672201 ATCCCTCCTCCCAATAATGTAACTATATTCTCTGGGAATGCGTATATGGTGGCTTCTCGA 6672142
Query 108228 GCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAA 108287
| |||||| || ||||||||| | ||| ||||||||| |||| | ||||||| ||
Sbjct 6672141 GACTTTGTTCAGCATGTCTTAAATAACAAAAAATCCCAACAACTGATAGAATGGGCTAAG 6672082
Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCT 108347
|||||||| ||||| || ||| ||||||||||||||||||||| || | ||||||||
Sbjct 6672081 GACACCTACAGCCCTGATGAATTCCTCTGGGCCACCCTTCAGCGGGCCTCCTGGATGCCC 6672022
Query 108348 GGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407
||||| ||||| |||| ||||||| | ||||||||||||| |||||| ||||||||
Sbjct 6672021 GGCTCAGTTCCCCCTCACCACAAGTATGATATCTCAGACATGAATGCCATTGCCAGGCTG 6671962
Query 108408 GTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG--GGGGCGCCTTATGCACCCTGCT 108465
|||||||||||| | || ||||| ||| ||| ||| ||||| ||||| || |||
Sbjct 6671961 GTCAAGTGGCAGGAACATGAGGGTGATATCA--ATGAAGGGGCACCTTACCAGCCTTGCA 6671904
Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525
| || || | | | || | ||||| ||||| ||| | ||||||||||| ||||| ||||
Sbjct 6671903 CGGGGGTCTACCAGCGGACTATCTGTATTTATGGGACTGGGGACCTGTATTGGATGCTCC 6671844
Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGT 108585
| |||||||| | ||||| |||||||||||||| | |||||||||||| | || ||||
Sbjct 6671843 AAAACCATCATTTGTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATATTCTCCAGT 6671784
Query 108586 GCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 6671783 GTTTAGAAGAGTACCTACGTCATAAAGCCATCTACGGGACTGAACTCTGAG 6671733
>seq40
Length=15643725
Score = 131 bits (144), Expect = 1e-25
Identities = 604/940 (64%), Gaps = 29/940 (3%)
Strand=Plus/Minus
Query 107634 AACATAACCAGAGACTGTGAGCGCTTCA---AGGCCCAAAGGAAGTTCAT-ACAGTTCCC 107689
||||| ||||| ||||||| ||||| || | | | |||| ||| |||| |||
Sbjct 4999265 AACATGACCAGGGACTGTGGCTCCTTCATCAAGACGC---GCAAGTACATCACAGAGCCC 4999209
Query 107690 ACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGAT 107749
||||| || || ||| | | |||||| |||||||| || || ||||| ||| | |||||
Sbjct 4999208 -CTGAGCAAGGAGGAGGTGGCCTTCCCAATTGCCTATTCCATCGTGGTTCATCACAAGAT 4999150
Query 107750 TGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCA 107809
||||| | || |||| ||||| ||| | || || ||||| | ||||| | ||
Sbjct 4999149 TGAAATGCTCGACAGGCTCCTGCGGGCCATCTACATGCCGCAGAATTTCTACTGCATTCA 4999090
Query 107810 CGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTT 107869
|||||| ||| ||| || | ||| || ||||| | || ||| || || ||
Sbjct 4999089 CGTGGACAAGAAATCCGAGGAAGCCTTCTTAGCTGCGGTGATGGGCATCGCATCGTGTTT 4999030
Query 107870 CCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGT 107929
| || |||||| ||||||| |||| | ||||| ||||| || ||| | ||
Sbjct 4999029 CAGTAACGTCTTCGTGGCCAGCCGCTTGGAGACCGTGGTGTATGCATCTTGGAGTCGGGT 4998970
Query 107930 GCAAGCTGACCTGAACTGTATGGAAGACTTG--CTCCAGAGCTCAGTGCCATGGAAGTAC 107987
||| || ||||| ||||| ||| | || || | ||| | | || ||||| |||
Sbjct 4998969 GCAGGCAGACCTCAACTGCATGAAGGAGCTGTACGCCATGCATGCGGGC--TGGAAATAC 4998912
Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047
|| | ||| ||||| | || || || || || ||||| |||||||| |
Sbjct 4998911 TTGATCAATCTGTGCGGCATGGATTTTCCTATTAAAACCAACCTGGAGATGGTTAGGAAG 4998852
Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107
|| || || | |||| | |||| ||||| | ||| | | | || ||| ||
Sbjct 4998851 CTGCAGTCATTCAGGGGTGAAAACAACCTGGAGACAGAGA-AGATGCC-AGCCCATAAGG 4998794
Query 108108 a--aTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCA---GCAAGA 108162
| | | |||| | | ||||| | | || || | | || || | | |
Sbjct 4998793 AGGAAAGGTGGAGGAAGCACTATGTCATCATGAACGGACGGATCATTAACACGGGGACGG 4998734
Query 108163 TGAAGGACCCTCC--CCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220
| ||| || || |||||| | ||| ||||| |||| | |||||||||||||
Sbjct 4998733 TCAAGACACCGCCTCCCCTGAGCAC--ACCTCTGTTCTCAGGTAGCGCCTATTTTGTGGT 4998676
Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTTGAAT 108279
| | | | | || | || ||||| | | |||| ||| | | || |
Sbjct 4998675 CAGTAGGGAGTACGTGAGATTCGTGTTAGAGGATGAGCACATCCAGAAGT-TCATGGAGT 4998617
Query 108280 GGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGT 108339
||| | ||||| || || ||||| || |||||||||||||| | || | |||
Sbjct 4998616 GGGCGCAGGACACGTACAGTCCCGATGAGTACCTCTGGGCCACCATCCAAAGGATTCCCG 4998557
Query 108340 GGATGCCTGGCTCTGT-TCCTAGCCACCCC-AAGTATCACATCTCAGACATGACTGCCAT 108397
|||| || || | |||| ||| | |||||| || | || ||||||| ||| |
Sbjct 4998556 AAGTGCCAGGTTCCTTGTCCT--CCAGCAATAAGTATGACCTGTCTGACATGAACGCCGT 4998499
Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457
||| || | ||||||||||||||| ||| || || || | || || || || |
Sbjct 4998498 GGCCCGGTTTGTCAAGTGGCAGTACTTCGAAGGCGACGTGTCCCGCGGTGCACCCTACCC 4998439
Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517
|||||| || | ||| | | ||| | ||||||| |||||||||||| || ||||
Sbjct 4998438 GCCCTGCGACGGGGTGCATGTGCGCGCCGTGTGCATTTTCGGGGCCGGGGATTTGAACTG 4998379
Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||| || | || || ||| |||| || || |||||||||
Sbjct 4998378 GATGCTTCGCAAGCACCACTTCTTTGCCAATAAGTTTGAC 4998339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347992086616482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |