Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq11 1177 0.0 seq40 131 1e-25 >seq11 Length=20748735 Score = 1177 bits (1304), Expect = 0.0 Identities = 1158/1491 (78%), Gaps = 48/1491 (3%) Strand=Plus/Minus Query 107157 CTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGGAGTTGAACTT-- 107214 |||| |||||||||| | |||||| || || ||| | |||| | ||||||||| ||| Sbjct 6673186 CTGAAGATATTTGTCCAGAGAAGAAATACATGTTTGCTATCAGTTTGGAGTTGACCTTCC 6673127 Query 107215 ---GA----TGTTCTGGATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC 107267 || || || || | ||||||||| ||| |||| |||||||| |||| | || Sbjct 6673126 TGGGAACTTTGCTCATGACTGGTTTGTAATCGAAG-CATTCTGTTCTGTTTAAGG-TGTC 6673069 Query 107268 CTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGG 107327 | ||| ||| ||| ||| || | ||| || ||| ||||||| Sbjct 6673068 CA--TCCTCCT---CTG----------CTCATGGTTTCCAATTCCAGGAAGATGATCCCA 6673024 Query 107328 TGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTG 107387 |||||||| || || || | |||| |||||||| |||||| ||||||||| || Sbjct 6673023 TGGAAGAAA---CTGTGTGGGCGCTATCACATGTGGGCCATGGGCTTTTATATGCTGTTG 6672967 Query 107388 GCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTG 107447 ||| | ||| |||||| |||||| ||||| || | |||||| | || ||| Sbjct 6672966 GCCATCGTTGCTCTGAAACTTTCTCTCAGATTAAGGTGTGATTTGGA---CTT------- 6672917 Query 107448 GAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTG 107507 ||| || || ||||| ||| |||| | ||| || |||||||| ||||||||| Sbjct 6672916 -----CAGAGAATTTCAGAGCCAGGACTGCAAGGATATCTTGTACAAGTCCCTGAAGCTC 6672862 Query 107508 CCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTC 107567 ||||||||||| |||||||||||||| || ||||| |||||||||||||| |||||| || Sbjct 6672861 CCAGCAAAGAGTTCCATCAACTGTTCAGGAATCACTCGAGGGGACCAGGAGGCAGTGATC 6672802 Query 107568 CAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTAT 107627 || || | || |||| |||||| | ||||| |||||| |||| | || | | Sbjct 6672801 CAAGCTGTTCTGAACAATCTGGAAATCAAGAAGAAGCGGGAGCCTTTTACAGATGAGGAC 6672742 Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||| | |||||| ||||||||| ||| ||| | ||||||| ||||| |||||| Sbjct 6672741 TACATTGCTGGGACCAGAAACTGTGAGCTCTTTAAGACTGAAAGGAAATTCATCCAGTTC 6672682 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 |||||||| ||||||||| || ||||||| ||||| |||||||||||||| ||||||||| Sbjct 6672681 CCACTGAGCAAAGAAGAGTTAAACTTCCCTATTGCATACTCGATGGTGGTTCATGAGAAG 6672622 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||| || Sbjct 6672621 ATTGAAAACTTCGAAAGGCTGCTGAGAGCTGTGTATGCCCCTCAGAACATATACTGTATC 6672562 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || |||||| ||||||| ||||||| |||| || ||| || | ||||||| ||| ||| Sbjct 6672561 CATGTGGATCTGAAGTCTCCAGAGAGTTTCCAAATGGCAGTGAGGGCCATTGCTTCATGC 6672502 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 |||| ||||||||||| ||||||||| |||| || ||| |||||||||| ||||||||| Sbjct 6672501 TTCCAAAATGTCTTCATAGCCAGTAAGCTGGTTCCAGTGATTTATGCCTCATGGTCCAGA 6672442 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||| || Sbjct 6672441 GTGCAAGCTGACCTGAACTGCATGAAAGACTTGCTCCAGAGCCCAGTGCCTTGGAAATAT 6672382 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 || ||||||||||| ||||||||||| || |||||||||||||| |||||| ||| |||| Sbjct 6672381 TTCCTGAATACATGTGGGACAGACTTTCCTATAAAGACCAATGCTGAGATGATCCAGGCC 6672322 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || ||| | ||||| || || |||||||||||||| ||||||||| ||||| ||||||| Sbjct 6672321 CTGAAGCTTTTGAATGGGAAAAACAGTATGGAGTCAGAGGTACCTCCTGAGCACAAAAAA 6672262 Query 108108 aaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAG 108167 | ||||||||||||| | | |||||| ||||| || | |||| ||| |||| Sbjct 6672261 ATCCGCTGGAAATACCATTTTCAGGTGAGAGACAAGATGCAGATAACCATGGAGAGGAAG 6672202 Query 108168 GACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGA 108227 |||||| || ||||| || | || ||| | |||||||| ||| | ||||| |||||| Sbjct 6672201 ATCCCTCCTCCCAATAATGTAACTATATTCTCTGGGAATGCGTATATGGTGGCTTCTCGA 6672142 Query 108228 GCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAA 108287 | |||||| || ||||||||| | ||| ||||||||| |||| | ||||||| || Sbjct 6672141 GACTTTGTTCAGCATGTCTTAAATAACAAAAAATCCCAACAACTGATAGAATGGGCTAAG 6672082 Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCT 108347 |||||||| ||||| || ||| ||||||||||||||||||||| || | |||||||| Sbjct 6672081 GACACCTACAGCCCTGATGAATTCCTCTGGGCCACCCTTCAGCGGGCCTCCTGGATGCCC 6672022 Query 108348 GGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407 ||||| ||||| |||| ||||||| | ||||||||||||| |||||| |||||||| Sbjct 6672021 GGCTCAGTTCCCCCTCACCACAAGTATGATATCTCAGACATGAATGCCATTGCCAGGCTG 6671962 Query 108408 GTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG--GGGGCGCCTTATGCACCCTGCT 108465 |||||||||||| | || ||||| ||| ||| ||| ||||| ||||| || ||| Sbjct 6671961 GTCAAGTGGCAGGAACATGAGGGTGATATCA--ATGAAGGGGCACCTTACCAGCCTTGCA 6671904 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 | || || | | | || | ||||| ||||| ||| | ||||||||||| ||||| |||| Sbjct 6671903 CGGGGGTCTACCAGCGGACTATCTGTATTTATGGGACTGGGGACCTGTATTGGATGCTCC 6671844 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGT 108585 | |||||||| | ||||| |||||||||||||| | |||||||||||| | || |||| Sbjct 6671843 AAAACCATCATTTGTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATATTCTCCAGT 6671784 Query 108586 GCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 | ||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 6671783 GTTTAGAAGAGTACCTACGTCATAAAGCCATCTACGGGACTGAACTCTGAG 6671733 >seq40 Length=15643725 Score = 131 bits (144), Expect = 1e-25 Identities = 604/940 (64%), Gaps = 29/940 (3%) Strand=Plus/Minus Query 107634 AACATAACCAGAGACTGTGAGCGCTTCA---AGGCCCAAAGGAAGTTCAT-ACAGTTCCC 107689 ||||| ||||| ||||||| ||||| || | | | |||| ||| |||| ||| Sbjct 4999265 AACATGACCAGGGACTGTGGCTCCTTCATCAAGACGC---GCAAGTACATCACAGAGCCC 4999209 Query 107690 ACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGAT 107749 ||||| || || ||| | | |||||| |||||||| || || ||||| ||| | ||||| Sbjct 4999208 -CTGAGCAAGGAGGAGGTGGCCTTCCCAATTGCCTATTCCATCGTGGTTCATCACAAGAT 4999150 Query 107750 TGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCA 107809 ||||| | || |||| ||||| ||| | || || ||||| | ||||| | || Sbjct 4999149 TGAAATGCTCGACAGGCTCCTGCGGGCCATCTACATGCCGCAGAATTTCTACTGCATTCA 4999090 Query 107810 CGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTT 107869 |||||| ||| ||| || | ||| || ||||| | || ||| || || || Sbjct 4999089 CGTGGACAAGAAATCCGAGGAAGCCTTCTTAGCTGCGGTGATGGGCATCGCATCGTGTTT 4999030 Query 107870 CCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGT 107929 | || |||||| ||||||| |||| | ||||| ||||| || ||| | || Sbjct 4999029 CAGTAACGTCTTCGTGGCCAGCCGCTTGGAGACCGTGGTGTATGCATCTTGGAGTCGGGT 4998970 Query 107930 GCAAGCTGACCTGAACTGTATGGAAGACTTG--CTCCAGAGCTCAGTGCCATGGAAGTAC 107987 ||| || ||||| ||||| ||| | || || | ||| | | || ||||| ||| Sbjct 4998969 GCAGGCAGACCTCAACTGCATGAAGGAGCTGTACGCCATGCATGCGGGC--TGGAAATAC 4998912 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 || | ||| ||||| | || || || || || ||||| |||||||| | Sbjct 4998911 TTGATCAATCTGTGCGGCATGGATTTTCCTATTAAAACCAACCTGGAGATGGTTAGGAAG 4998852 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || || || | |||| | |||| ||||| | ||| | | | || ||| || Sbjct 4998851 CTGCAGTCATTCAGGGGTGAAAACAACCTGGAGACAGAGA-AGATGCC-AGCCCATAAGG 4998794 Query 108108 a--aTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCA---GCAAGA 108162 | | | |||| | | ||||| | | || || | | || || | | | Sbjct 4998793 AGGAAAGGTGGAGGAAGCACTATGTCATCATGAACGGACGGATCATTAACACGGGGACGG 4998734 Query 108163 TGAAGGACCCTCC--CCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 | ||| || || |||||| | ||| ||||| |||| | ||||||||||||| Sbjct 4998733 TCAAGACACCGCCTCCCCTGAGCAC--ACCTCTGTTCTCAGGTAGCGCCTATTTTGTGGT 4998676 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTTGAAT 108279 | | | | | || | || ||||| | | |||| ||| | | || | Sbjct 4998675 CAGTAGGGAGTACGTGAGATTCGTGTTAGAGGATGAGCACATCCAGAAGT-TCATGGAGT 4998617 Query 108280 GGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGT 108339 ||| | ||||| || || ||||| || |||||||||||||| | || | ||| Sbjct 4998616 GGGCGCAGGACACGTACAGTCCCGATGAGTACCTCTGGGCCACCATCCAAAGGATTCCCG 4998557 Query 108340 GGATGCCTGGCTCTGT-TCCTAGCCACCCC-AAGTATCACATCTCAGACATGACTGCCAT 108397 |||| || || | |||| ||| | |||||| || | || ||||||| ||| | Sbjct 4998556 AAGTGCCAGGTTCCTTGTCCT--CCAGCAATAAGTATGACCTGTCTGACATGAACGCCGT 4998499 Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457 ||| || | ||||||||||||||| ||| || || || | || || || || | Sbjct 4998498 GGCCCGGTTTGTCAAGTGGCAGTACTTCGAAGGCGACGTGTCCCGCGGTGCACCCTACCC 4998439 Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517 |||||| || | ||| | | ||| | ||||||| |||||||||||| || |||| Sbjct 4998438 GCCCTGCGACGGGGTGCATGTGCGCGCCGTGTGCATTTTCGGGGCCGGGGATTTGAACTG 4998379 Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| || | || || ||| |||| || || ||||||||| Sbjct 4998378 GATGCTTCGCAAGCACCACTTCTTTGCCAATAAGTTTGAC 4998339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347992086616482