Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_002685.2 Length=31301 Score E Sequences producing significant alignments: (Bits) Value seq4931 185 2e-42 >seq4931 Length=27746 Score = 185 bits (204), Expect = 2e-42 Identities = 571/870 (66%), Gaps = 20/870 (2%) Strand=Plus/Plus Query 16072 AATATTGGAGCCAGGTGGTCTTTAGATATTATGGATACAATTAACCCTTTTAATCATCAT 16131 || || ||| |||||||||| ||||| | ||||| || |||| || ||||||||||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 16132 AGAAATACAGGCCTTAAGTATAGATCACAGTTGTTAGGAAATGGTAGATTCAGTAGATTT 16191 |||||||| || | | ||| || || ||| | |||||||||||| | | | ||| Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837 Query 16192 CACATTCAAGTTCCACAGAAGTTTTTTGCAATTAAAAACTTACTTCTGCTACCTGGAACT 16251 || ||||| ||||| || |||||||||||| |||||| || ||||||||||| ||| | Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897 Query 16252 TATAATTATGAGTGGTATTTTAGGAAAGATCCAAATATGATTTTTCAATCTTCAATTGGA 16311 || | ||| || |||| |||||| |||||| ||| |||||||| || | | |||| Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957 Query 16312 AATGATTTAAGAGCAGATGGAGCATATATAAATTATTCCAATATAAATCTATATGTTTCT 16371 |||||| | || | || ||||| | ||| | | || || | |||| || | || Sbjct 16958 AATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACT 17017 Query 16372 TTTTTCCCAATGAATTATGACACTGTCAGCGA-ACTTGAATTGATGCTAAGAAATGCTAC 16430 || || || ||| | || |||||| | | | || ||| ||||| | |||| Sbjct 17018 TTCTTTCCGATGTCTCATAACACTG-CTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076 Query 16431 TAATGATCAAAATTTTGCAGACTAT-TTGGGAGCTGTTAACAATTTGTATCAGATTCCTC 16489 ||| ||||| || | |||||| || ||| ||||||| | ||| ||||||| Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCTATTCCTC 17135 Query 16490 CCAATACTTCTACGGTTGTTGTTAATGTTCCGGATAGATCTTGGGGCGCTTTTAGAGGTT 16549 | || | || || | | | |||| | || ||||| || |||||||||| Sbjct 17136 CGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195 Query 16550 GGAGCTTTAACAGAGTTAAAGCATCGGAGACTCCCATGATAGGAGCTACAAAAGATCCCA 16609 || |||| ||| | ||| | ||| || || | || || || || || || Sbjct 17196 GGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCAT 17255 Query 16610 ACTTTTTATATTCTGGAAGCATTCCATATCTAGATGGCACGTTCTATTTAACACATACGT 16669 ||||| || || || || || ||| |||| || || |||||| | || || | Sbjct 17256 ACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACAC-T 17314 Query 16670 TTCA-ACGCGTTTCAATCCAGTGGGATTCTAGCGTGCCATGGCCCGGGGATGATAGGCTT 16728 ||| | || | || |||| |||||| || ||||| || |||| || ||| Sbjct 17315 ATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTT 17374 Query 16729 CTTATACCAAATTGGTTTGAAATCAAGAGAGATTATTCAATTGATGCCGAA-GCTACCAA 16787 | ||||| ||| ||| | || || ||||| | || || ||| |||| || Sbjct 17375 TTAATACCTAATGAATTTCACATAAAAAGAGA------GGTGGACGCGGAAGGCTA-TAA 17427 Query 16788 TATGAGTCAATGTAATATTACAAAAGACTGGTATATGATACAAATGGCTGCTAATTATAA 16847 | ||| | | ||||| || || ||||||||||| |||||| ||| | || || Sbjct 17428 CACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAA 17487 Query 16848 TCAAGCCTATCAAGGTTACAAACTTCCAATAAGTCATAAATAT-TATGGTTTTC---TTG 16903 | | || ||||||| | || || | | | ||||| || || || ||| || Sbjct 17488 TATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTT 17547 Query 16904 A--AAATTTTCAACCAATGAGTCGTCAAGT 16931 | ||||||| |||| ||| || | ||||| Sbjct 17548 AAGAAATTTTGAACCCATGTGTAGACAAGT 17577 Score = 93.3 bits (102), Expect = 8e-15 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 5741 TCAAAAGGGTTAAGTGTTCTACCATATGGCATTGGATGTGTTAAAGCACTTGCATACATT 5800 ||||| || ||||||| | ||| | ||||| ||||| ||||| || || ||||||||| Sbjct 6033 TCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATT 6092 Query 5801 CCACAAATGTCATACACATATACTGGTTCAGTATATATGCCTAAAAATGTGGGATAACAC 5860 || |||| ||||| ||||| | ||||| | | | |||| | ||||| || ||| Sbjct 6093 CCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCAC 6152 Query 5861 CGTCCTCCTCTCACACTGGCTCTTACAAA 5889 ||||| ||||| | || |||||||||| Sbjct 6153 CGTCCCCCTCTGATGCTTTCTCTTACAAA 6181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99964151107158