Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_002685.2
Length=31301
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 185 2e-42
>seq4931
Length=27746
Score = 185 bits (204), Expect = 2e-42
Identities = 571/870 (66%), Gaps = 20/870 (2%)
Strand=Plus/Plus
Query 16072 AATATTGGAGCCAGGTGGTCTTTAGATATTATGGATACAATTAACCCTTTTAATCATCAT 16131
|| || ||| |||||||||| ||||| | ||||| || |||| || |||||||||||
Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777
Query 16132 AGAAATACAGGCCTTAAGTATAGATCACAGTTGTTAGGAAATGGTAGATTCAGTAGATTT 16191
|||||||| || | | ||| || || ||| | |||||||||||| | | | |||
Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837
Query 16192 CACATTCAAGTTCCACAGAAGTTTTTTGCAATTAAAAACTTACTTCTGCTACCTGGAACT 16251
|| ||||| ||||| || |||||||||||| |||||| || ||||||||||| ||| |
Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897
Query 16252 TATAATTATGAGTGGTATTTTAGGAAAGATCCAAATATGATTTTTCAATCTTCAATTGGA 16311
|| | ||| || |||| |||||| |||||| ||| |||||||| || | | ||||
Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957
Query 16312 AATGATTTAAGAGCAGATGGAGCATATATAAATTATTCCAATATAAATCTATATGTTTCT 16371
|||||| | || | || ||||| | ||| | | || || | |||| || | ||
Sbjct 16958 AATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACT 17017
Query 16372 TTTTTCCCAATGAATTATGACACTGTCAGCGA-ACTTGAATTGATGCTAAGAAATGCTAC 16430
|| || || ||| | || |||||| | | | || ||| ||||| | ||||
Sbjct 17018 TTCTTTCCGATGTCTCATAACACTG-CTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076
Query 16431 TAATGATCAAAATTTTGCAGACTAT-TTGGGAGCTGTTAACAATTTGTATCAGATTCCTC 16489
||| ||||| || | |||||| || ||| ||||||| | ||| |||||||
Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCTATTCCTC 17135
Query 16490 CCAATACTTCTACGGTTGTTGTTAATGTTCCGGATAGATCTTGGGGCGCTTTTAGAGGTT 16549
| || | || || | | | |||| | || ||||| || ||||||||||
Sbjct 17136 CGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195
Query 16550 GGAGCTTTAACAGAGTTAAAGCATCGGAGACTCCCATGATAGGAGCTACAAAAGATCCCA 16609
|| |||| ||| | ||| | ||| || || | || || || || || ||
Sbjct 17196 GGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCAT 17255
Query 16610 ACTTTTTATATTCTGGAAGCATTCCATATCTAGATGGCACGTTCTATTTAACACATACGT 16669
||||| || || || || || ||| |||| || || |||||| | || || |
Sbjct 17256 ACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACAC-T 17314
Query 16670 TTCA-ACGCGTTTCAATCCAGTGGGATTCTAGCGTGCCATGGCCCGGGGATGATAGGCTT 16728
||| | || | || |||| |||||| || ||||| || |||| || |||
Sbjct 17315 ATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTT 17374
Query 16729 CTTATACCAAATTGGTTTGAAATCAAGAGAGATTATTCAATTGATGCCGAA-GCTACCAA 16787
| ||||| ||| ||| | || || ||||| | || || ||| |||| ||
Sbjct 17375 TTAATACCTAATGAATTTCACATAAAAAGAGA------GGTGGACGCGGAAGGCTA-TAA 17427
Query 16788 TATGAGTCAATGTAATATTACAAAAGACTGGTATATGATACAAATGGCTGCTAATTATAA 16847
| ||| | | ||||| || || ||||||||||| |||||| ||| | || ||
Sbjct 17428 CACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAA 17487
Query 16848 TCAAGCCTATCAAGGTTACAAACTTCCAATAAGTCATAAATAT-TATGGTTTTC---TTG 16903
| | || ||||||| | || || | | | ||||| || || || ||| ||
Sbjct 17488 TATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTT 17547
Query 16904 A--AAATTTTCAACCAATGAGTCGTCAAGT 16931
| ||||||| |||| ||| || | |||||
Sbjct 17548 AAGAAATTTTGAACCCATGTGTAGACAAGT 17577
Score = 93.3 bits (102), Expect = 8e-15
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 5741 TCAAAAGGGTTAAGTGTTCTACCATATGGCATTGGATGTGTTAAAGCACTTGCATACATT 5800
||||| || ||||||| | ||| | ||||| ||||| ||||| || || |||||||||
Sbjct 6033 TCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATT 6092
Query 5801 CCACAAATGTCATACACATATACTGGTTCAGTATATATGCCTAAAAATGTGGGATAACAC 5860
|| |||| ||||| ||||| | ||||| | | | |||| | ||||| || |||
Sbjct 6093 CCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCAC 6152
Query 5861 CGTCCTCCTCTCACACTGGCTCTTACAAA 5889
||||| ||||| | || ||||||||||
Sbjct 6153 CGTCCCCCTCTGATGCTTTCTCTTACAAA 6181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 99964151107158
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |