Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq25 86.0 5e-12 >seq25 Length=23434732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| ||||||| || ||| || ||||| || || || | || Sbjct 21720542 AGATCTTCCTCTGATGGCGCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTATGTGGTGAA 21720601 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| || | || | || ||||| |||||||| || || Sbjct 21720602 TGGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCTGGAGACATGGGCCTGGGTGTGCCCTT 21720661 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| ||||| || || || ||||| || || ||||||||||| | |||| Sbjct 21720662 CAACATTGCCAGCTACGCCCTGCTCACCTACATGATTGCACACATCACAG 21720711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398866832469385