Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_002702.1 Length=32621 Score E Sequences producing significant alignments: (Bits) Value seq4931 708 0.0 >seq4931 Length=27746 Score = 708 bits (784), Expect = 0.0 Identities = 1330/1937 (69%), Gaps = 51/1937 (3%) Strand=Plus/Plus Query 17288 GCTCCAAACAGAGCAAACTACATTGGTTTCAGAGATAATTTCATAGGGTTAATGTACTAT 17347 || |||||||| |||| || || ||||| || ||||| || || |||||||||| ||| Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201 Query 17348 AACAGCAATGGAAATCTTGGAGTGTTGGCAGGTCAGGCTTCTCAACTTAACGCCGTTGTT 17407 ||||| ||| | ||| | || || || || ||||| | || || ||||| || || | Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261 Query 17408 GACTTGCAGGACAGAAACACAGAATTGTCATATCAGTTGATGTTGGATAGTTTGTATGAC 17467 ||| | || |||||||| |||||||||||||||||| | ||||| |||| ||| | || Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321 Query 17468 AGAAGTAGGTATTTCAGTATGTGGAATCAGGCTATTGATTCTTACGATCAGGATGTGCGC 17527 |||| | | |||| ||| |||||||||| || | ||||| || |||| || || || Sbjct 16322 AGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGA 16381 Query 17528 GTCATTGAAAATAATGGCGTTGAGGATGATATGCCTAATTATTGTTTTCCTTTAAGTGGC 17587 |||| || |||| ||| || || || || | || |||||||| ||||| ||| ||| Sbjct 16382 ATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGG- 16440 Query 17588 ATAAACACCG---GAGC-TACTTCTGTTCAAGTATCATTGA--ATCAA--AATAACTGGG 17639 || | || || |||| ||||| || | || || | ||| |||||| Sbjct 16441 ATGTTCTCCTATTGATTATACTGCTGTT-AATCAAAATGGACAAGCAATCAATAAC---- 16495 Query 17640 TAGCTACAAACGGTGCTTCTGTTAATAATTACATAAACATTGGTAACTTGGACTGCATGG 17699 | ||| ||| ||| || || || || || | || ||||||| Sbjct 16496 -----AATAACCCTGCGCAGGTTCTTA------TAGGCAAAGGAAATGTTGAATGCATGG 16544 Query 17700 AAATCAACCTAGCCGCCAACCTATGGAGAGGTTTCCTGTACTCCAACATCGCCCTTTACT 17759 |||||||| |||| |||||||| |||| ||| ||||| || || ||||| || || Sbjct 16545 AAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATC 16604 Query 17760 TGCCTGATGACCTGAAGTTCACACCTCCGAATGTCGTGCTGCCGGAAAA-CACCAACACC 17818 |||| ||| || | || ||| || | ||||| || ||||| | | || | | Sbjct 16605 TGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTA- 16663 Query 17819 TATGCCTACATGAACGGCAGACTCCCAGCAGGAGGGTTGGTGGACACTTATGTCAACATC 17878 ||||| |||||||| | | ||||| || || |||| || |||| ||||||| Sbjct 16664 TATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATA 16723 Query 17879 GGTGCCAGGTGGTCCCTCGATGTCATGGATAACGTCAACCCATTCAATCATCACAGAAAT 17938 || |||||||||| | ||||| ||||| | || || ||||| ||||||||||||||| Sbjct 16724 GGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAAT 16783 Query 17939 GCCGGACTGCGCTACAGGTCCCAGCTTCTGGGGAACGGCAGATA--CTGCCAGTTTCACA 17996 | || || | |||||||| ||||| | || || || | || || || ||||| | Sbjct 16784 ACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCC--TTTCATA 16841 Query 17997 TCCAGGTTCCTCAGAAATTTTTTGCCATCAGAAACCTTTTACTTCTTCCGGGGACATACA 18056 | |||||||| || || |||||||| | | || | | || || ||||| | |||| Sbjct 16842 TTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACA 16901 Query 18057 CCTACGAGTGGTCTTTTCGTAAAGATGTCAACATGGTTCTTCAGAGCACCCTGGGGAACG 18116 ||||| ||||||||| | |||||||| |||||| || | ||||| || || || || | Sbjct 16902 GTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATG 16961 Query 18117 ATCTCAGGGTCGACGGCGCTTCCATCAGAATAGACAGCGTGAACTTGTACGCCAGCTTCT 18176 |||| |||| ||||| || || | | | | |||||| | | | | | || | |||| Sbjct 16962 ATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCT 17021 Query 18177 TCCCCATGGCCCACAACACGGCTTCTACTCTGGAGGCCATGTTGAGAAACGACACCAACG 18236 | || ||| | || ||||| |||||||||||||| | ||| | | || || |||| Sbjct 17022 TTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACG 17081 Query 18237 ATCAGTCCTTTATTGATTACCTGTCGTCAGCG--AACATGCTGTACCCCATCCCCGCCGG 18294 |||||||||| || || || || ||||| |||||||| || | || || | Sbjct 17082 ATCAGTCCTTCGGCGACTATCTTTC--CAGCGTTAACATGCTTTATGCTATTCCTCC--- 17136 Query 18295 GGCTTCTAACC----TGCCCATCTCCATTCCTTCTCGCAACTGGGCCGCCTTTAGGGGTT 18350 || || ||| |||| ||||| ||||| | | || ||||| |||||||| |||| Sbjct 17137 -GCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195 Query 18351 GGAGTTTTACGCGCCTCAAACAAAGAGAAACGCCGGCTCTGGGGTCGCCGTTTGATCCCT 18410 || ||||| | || |||||| ||||| || | | || || | ||||| || | Sbjct 17196 GGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCAT 17255 Query 18411 ACTTCACGTATTCAGGGACCATCCCCTACCTGGATGGCACTTTCTACCTCAACCACACGT 18470 |||| | ||| || || | ||||| || ||||| || || || | ||||| Sbjct 17256 ACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTA 17315 Query 18471 TCAGAAGGGTTTCCATCCAGTTTGACTCCTCCGTGCAGTGGCCCGGCAATGACAGACTTC 18530 |||||| ||| |||| |||||||| || || || ||||| || |||||||||||| Sbjct 17316 TCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTT 17375 Query 18531 TCACTCCTAACGAGTTCGAGATAAAACGAACAGTGGACGGGGAAGGATACACCGTGGCCC 18590 | | ||||| || || | |||||| || ||||||| |||||| || | | | | Sbjct 17376 TAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTC 17435 Query 18591 AGTCCAACATGACCAAAGACTGGTTCCTGGTGCAGATGCTGGCTAACTATAACATAGGTT 18650 || || || || || || |||| || | || ||||| ||| |||| || || || | Sbjct 17436 AGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGAT 17495 Query 18651 ATCAAGGATACCACCTCCCTGACGGTTACAAGGACCGAAACTACTCCTTCCTGAGAAATT 18710 | ||||| | ||||| || | ||| || || || || ||||| | ||||||| Sbjct 17496 ACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATT 17555 Query 18711 TCCAACCCATGTGTCGCCAAGTGGTGGACACGGCCAACTATGCCGCTTACCAAAACGTCA 18770 | ||||||||||| | ||||| ||||| | | || | || ||| ||| Sbjct 17556 TTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTG 17615 Query 18771 TGCTGACAAACCAGCACAACAATTCAGGATTCTCAGGGTTTGCCAGCGCCGCTCTTCCCC 18830 || | | | ||||| || |||||||| || | | | | | || || | Sbjct 17616 CTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCAT--TATGGACCCT-TTGGGC 17672 Query 18831 GAGAAGGCCATCCTTACCCAGCTAACTGGCCCTATCCTCTCGTGGGAGCTAATGCCGTTC 18890 || ||||||||||||| || ||||||||| | || ||| | |||| | || | | Sbjct 17673 GACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTA 17732 Query 18891 CTACCATCACACAGAGGAAGTTTTTGTGCGACAGAACCATGTGGAGGATTCCGTTCTCCT 18950 ||||| || ||||| || ||||| || |||||||| ||||||||||||||||||||| Sbjct 17733 AAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCT 17792 Query 18951 CCAACTTTATGTCCATGGGATCGCTCACAGACCTCGGTCAGAACCTATTGTATGCTAACT 19010 |||||||||||||||||||| | || ||||| || || || || | | ||||| || | Sbjct 17793 CCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATT 17852 Query 19011 CCGCTCATGCGTTGGACATGACGTTCGAGGTGGATGCGATGGAGGAGCCTACTCTGCTCT 19070 | |||||||| || |||||||| |||| || ||| | |||||||| || ||| ||| Sbjct 17853 CAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTCA 17912 Query 19071 ACATTCTGTTTGAAGTGTTTGATCTTGTGC-GTGTACACCAGCCACACAGAGGCGTCATC 19129 || || |||||||| ||||| | ||||| | || || ||||| || |||| ||||| Sbjct 17913 TGATGCTATTTGAAGTATTTGA-CATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCATA 17971 Query 19130 GAGACCGTGTACCTCAGAACCCCATTCTCTGCCGGTAACGCGACCACATA---ATGGGTT 19186 || | || || |||||||| || || || |||||||| | ||||| ||||| Sbjct 17972 GAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAATATGGGGA 18031 Query 19187 CCACAGAAGAGGAACTA 19203 || |||| || ||| || Sbjct 18032 CCTCAGAGGACGAAATA 18048 Score = 199 bits (220), Expect = 8e-47 Identities = 438/651 (67%), Gaps = 29/651 (4%) Strand=Plus/Plus Query 5303 TGGTCAGAAAACACTAtttttttGTTGTCTAATCTGGTGGCGAACGATCCGTACAGTGCG 5362 || || | ||||| ||||||||| || ||||| |||||||| || || |||||||||||| Sbjct 5577 TGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCG 5636 Query 5363 TTTGATAAAAGTTTGGCAATGCTTCGC------ATGGTTTGGTTCTTTTCCCTGTCTGCC 5416 ||||| || ||||| || ||||||||| || | ||||| |||||| | ||| Sbjct 5637 TTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCC---GCGGCC 5693 Query 5417 TTTTCCTTTGCTGCGATGTTCAGCTGC-ACGTACTCTTTGGCCAAGCATTTCCATTCCGG 5475 || ||||| || || || || || ||||| ||| | |||| ||| ||||| | | Sbjct 5694 ---TCTTTTGCCGCTATATT-AGTGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTC 5749 Query 5476 GAAAATGGTAGTGCGTTCATCAGGCACAAGCCTCACTCGCCAGCCTCGGTTGTGGAGCGT 5535 || | ||| || ||||| || || | ||| | ||| ||||| || || | || Sbjct 5750 AAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGT 5809 Query 5536 GATGACATCAACGGACGTGGCCACTTCTCCTCTCAATGGCTCGTTGGTCCAGCATAGTCG 5595 ||| |||| | ||||||| ||||| ||||| || || || |||||||| || || Sbjct 5810 AATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACG 5869 Query 5596 ACCTCCCTTTCGCGAACAGAACGGAGGCAGGACGTCGAGGAATGACTCATCCGGAGGGTC 5655 || || |||| |||||| || || || | || || | | || || | || | ||| Sbjct 5870 CCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGCGTC 5929 Query 5656 GGCGTCAATGGTGAAGATGCCTGGAAGAAGTTTCTCGTCAAAGTAGTCCATTTTTTGAC- 5714 || ||||| | ||| | || | || |||||| ||| ||||| | || Sbjct 5930 AGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACC 5989 Query 5715 -----CAACGGATTTCAGTTGATCCTCCCAGACGGCCACCGCGAGAGCCCTCTCAAATGG 5769 ||| | ||| | || || ||| |||| || || ||||| || Sbjct 5990 GGTTGCAAAGCGTTT---TGAATACTGATAGAGAGCCA-----AG-TTTCTGTCAAAGGG 6040 Query 5770 ATTCAAGGGGCTTCCGGACGGCATCGGATGCGTCAAGGCGCTGGCGTACATTCCACAGAT 5829 ||| | || || | ||||| |||||||| || |||||||| |||||||| | || Sbjct 6041 ATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAAT 6100 Query 5830 GTCATACACGTAGATGGGCTCGTGTAGAATTCCGATGTATGTGGGATAGCATCGACCCCC 5889 ||||| || || || || || | | || || ||||| ||||| ||||| || ||||| Sbjct 6101 ATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCC 6160 Query 5890 TCGAATGCTCTGTCTCACGTAATCATACATCTCGTTGGAGGGGGCCAGAAG 5940 || ||||| | ||| || ||||||| || |||| || ||||||||||| Sbjct 6161 TCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Score = 107 bits (118), Expect = 4e-19 Identities = 445/697 (64%), Gaps = 10/697 (1%) Strand=Plus/Plus Query 3384 GTGTTATAGACGATCCAGTCATAC--TGAGTGTGTG-ATTGGTGATATCTGAATATGTCC 3440 ||| | || |||||||| ||||| ||||||| | | |||| | || || || Sbjct 3628 GTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGT---AGGCAAAGATATCT 3684 Query 3441 TTCAGTAAAAGAGTGATGGCAGGAGGCAGACCCTTGGTGTAAGAGTTTATGAACCTATTG 3500 || | ||| || ||||| || || || || || || |||| || || || || || Sbjct 3685 TTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTT 3744 Query 3501 AGTTGAGGCGGTTGCATTTTGGGGGAGATGATGTGCAATTTAGATTGTATTTTCAGATTG 3560 || |||| ||||||||||||||| | || || |||||| ||| ||||| || || Sbjct 3745 AGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTG 3804 Query 3561 GAGATGTTGCCGGCGTGGTCCTTCCTGGGGTTCATGTTGTGCAACACTACCAGGACTGAG 3620 || || || || || || | |||||||| || || || || || | | || Sbjct 3805 GATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAGATAG 3864 Query 3621 TATCCTGTGCATTTTGGATACCTATCGTGTAGCTTGGAGGGGAATGCGTGAAAGAATTTG 3680 || || |||| ||||| | || ||| || || || || |||||||| ||||| Sbjct 3865 TACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTT 3924 Query 3681 GCGATGCCTTTGTGGTTTCCCATGTCTTCCATGCATTCGTCTAGAATGATGGCTATGGGC 3740 || || ||| ||| | | |||||| || || || | || ||||||||||| Sbjct 3925 GCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATGGGT 3984 Query 3741 CCATTAGAGGCCGCCTTGGCAAAAACATTTCTGGGGTCTGTGACGTCGTAGTTGAAATCC 3800 || | |||||||| |||| ||| | || | | || || || || Sbjct 3985 CCGGTTTTGGCCGCCTGTACAAATTTATTATTTGGATGCCCTAAATCATAATTTTCTTCG 4044 Query 3801 TGAGTAAGGTCAGAGTATGACATTTTAACAAATTTGGGCAAGAGCGAGCCGCTCTGAGGC 3860 | || || ||| || | || | ||| || | | || |||||||| Sbjct 4045 TTTAAGAGATCCTTGTACGATAGTTGCGCGAATCGAGGAGTTAATGTACCAGTCTGAGGC 4104 Query 3861 ACTAGAGTTCCCTGAGGCCCCATCTTATAATTGCCCTCGCATATTTGTGTTTCCCAGGCA 3920 || | || | ||||| ||||| || ||||| ||||||| || ||| | Sbjct 4105 ACAATTTCACCATTCTTTCCCATGTTATAGTTTCCCTCTATAATTTGTGCTTTCCATGAC 4164 Query 3921 CTAATCTCCTGTGGAGGGATCATGTCT--ATTTGTGGTACGATAAAGAAGACTGTTTCTG 3978 |||| |||||||| |||||||||||| || | ||| | |||||| | || || | Sbjct 4165 ATAATTTCCTGTGGGGGGATCATGTCTGCATAAGGGGT--TACAAAGAATATAGTCTCCG 4222 Query 3979 GTGGTGGATTTAGGAGCTGGGTGGAGATTATGTTCCTCAAGAGTTGTGATTTGCCGCATC 4038 | | ||||||| | | || || || | || ||||| | ||| ||||| || | | Sbjct 4223 GGGCGGGATTTAATAATTTGGACGACATAAGATTTCTCAATAATTGGGATTTTCCACTAC 4282 Query 4039 CAGTGGGGCCATAGATTACCCCAATCACTGGTTGTGT 4075 |||| || ||||| || ||||||||||| ||||| || Sbjct 4283 CAGTTGGACCATATATGACCCCAATCACCGGTTGAGT 4319 Score = 86.0 bits (94), Expect = 1e-12 Identities = 95/122 (78%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 7079 AAAGGGATATTTTCCCACCAGTCAGAGGATTTGTGG--TGGACGTGGTGAAAATAAAAGT 7136 |||| || |||| |||||||||| | | ||| | | || |||||||||||||| | Sbjct 7353 AAAGATATTTTTTTCCACCAGTCACATG--TTGAAGAATTTACATGGTGAAAATAAAAAT 7410 Query 7137 CTCTTCTTCTGACTGAGCATGTGTGAGATGTTTTGAAGAAATC-ACCACAGTATTCACAT 7195 |||||||||||||||| |||| || | |||||| || ||| | |||||| |||||||| Sbjct 7411 CTCTTCTTCTGACTGAACATGAATGCG-TGTTTTTAAAAAAACTACCACAAAATTCACAT 7469 Query 7196 TT 7197 || Sbjct 7470 TT 7471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104184881026278