Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq91 87.8 1e-12
seq66 86.0 5e-12
>seq91
Length=4965619
Score = 87.8 bits (96), Expect = 1e-12
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | ||||| ||||| | ||| | ||||| || || |
Sbjct 1585526 AACACTTCTTCCTTTTCTTAGCACCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACT 1585585
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||| ||||||||||| | | |||| | |||||||| || || || ||| |||
Sbjct 1585586 CCTTTTGGATGTTGTAGTCAGATAAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGA 1585645
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
| |||||||| ||||| ||| |||||||||||
Sbjct 1585646 TCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTTATC 1585682
>seq66
Length=5789316
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 2649879 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649820
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||||||| |||| || || || || || ||| | ||||||||| ||
Sbjct 2649819 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2649760
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | | | ||||||| |||||| || | ||||||| |
Sbjct 2649759 TGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2649700
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||| || || || || || |||||
Sbjct 2649699 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379042596136785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |