Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq22 113 4e-20
seq66 98.7 9e-16
seq91 91.5 1e-13
seq84 91.5 1e-13
>seq22
Length=17426531
Score = 113 bits (124), Expect = 4e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||| |||||| || |||||||| ||||| ||||| || ||||| || || || ||
Sbjct 1406368 CACCTCATCTTTGCTAGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATTGT 1406427
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
|||| ||| ||||||||| || ||||| || ||||| ||||||| ||| || || ||
Sbjct 1406428 TCCCAGATTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGACCATATATGGGGT 1406487
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196
||||||||| || ||||| || || ||
Sbjct 1406488 GCCCGTCTCTGTTTGAGACTCAATAATGGC 1406517
>seq66
Length=5789316
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| ||||| ||||| || |||||| | || || || ||
Sbjct 2649667 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 2649726
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||||||| | || || |||||
Sbjct 2649727 TGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 2649786
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || || ||||| ||| ||||||| || || || || ||
Sbjct 2649787 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 2649846
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||| || || || || ||||| || ||||| || | ||||||| |||
Sbjct 2649847 CATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTTTGAGGGGAGGT 2649895
>seq91
Length=4965619
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||| | || || || || || ||||| ||||| || | |||||||| ||
Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | |||| || || | || ||| |||||||| ||| || || |||
Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | || || || ||||| || ||| ||||||| ||| | || || |||
Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| ||||| || || ||||||||||| ||| | ||||| |||| |||
Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTCGGGGTGGT 1585548
>seq84
Length=7487594
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||| | |||||| | || || || || || ||||| |||| || | |||||||| ||
Sbjct 757644 ATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGAACCCTCG 757585
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | |||| || || | || ||| |||||||| | || || || |||
Sbjct 757584 GATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 757525
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| | |||| || ||||| || ||| ||| ||| | ||| ||| | |||| ||
Sbjct 757524 CAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGA-TGGATGTACTTTATCTGATTGCAA 757466
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||||||| || || ||||||||||| ||| | ||||| |||| |||
Sbjct 757465 CATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTTGGGGTGGT 757417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445403139388560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |