Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq22 113 4e-20 seq66 98.7 9e-16 seq91 91.5 1e-13 seq84 91.5 1e-13 >seq22 Length=17426531 Score = 113 bits (124), Expect = 4e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| || |||||||| ||||| ||||| || ||||| || || || || Sbjct 1406368 CACCTCATCTTTGCTAGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATTGT 1406427 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| ||| ||||||||| || ||||| || ||||| ||||||| ||| || || || Sbjct 1406428 TCCCAGATTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGACCATATATGGGGT 1406487 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||||||||| || ||||| || || || Sbjct 1406488 GCCCGTCTCTGTTTGAGACTCAATAATGGC 1406517 >seq66 Length=5789316 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 2649667 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 2649726 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||||||| | || || ||||| Sbjct 2649727 TGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 2649786 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || || || || Sbjct 2649787 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 2649846 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || ||||| || ||||| || | ||||||| ||| Sbjct 2649847 CATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTTTGAGGGGAGGT 2649895 >seq91 Length=4965619 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| | || || || || || ||||| ||||| || | |||||||| || Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || ||| |||||||| ||| || || ||| Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || ||| ||||||| ||| | || || ||| Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| || || ||||||||||| ||| | ||||| |||| ||| Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTCGGGGTGGT 1585548 >seq84 Length=7487594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| | |||||| | || || || || || ||||| |||| || | |||||||| || Sbjct 757644 ATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGAACCCTCG 757585 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 757584 GATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 757525 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | |||| || ||||| || ||| ||| ||| | ||| ||| | |||| || Sbjct 757524 CAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGA-TGGATGTACTTTATCTGATTGCAA 757466 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||| || || ||||||||||| ||| | ||||| |||| ||| Sbjct 757465 CATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTTGGGGTGGT 757417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445403139388560