Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003266.2 Length=35994 Score E Sequences producing significant alignments: (Bits) Value seq4931 311 2e-80 >seq4931 Length=27746 Score = 311 bits (344), Expect = 2e-80 Identities = 1230/1925 (64%), Gaps = 64/1925 (3%) Strand=Plus/Plus Query 19156 GCCTAACAGACCCAACTACATTGGCTTCAGAGACAATTTTATCGGGCTCATGTACTACAA 19215 ||| ||||| || || || || || || || || || ||||||||| | |||| || || Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 19216 CAGCACTGGCAATATGGGGGTGCTGGCCGGTCAGGCCTCTCAGCTGAATGCTGTGGTTGA 19275 ||| | | ||||| |||| || | |||||||| | || ||||| |||||||| | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 19276 CTTGCAAGACAGAAACACTGAACTGTCCTACCAGCTCTTGCTTGACTCTCTGGGTGACAG 19335 | | ||||||||||| || ||| |||| || ||||| || | || | | || || Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 19336 AACCCGGTATTTCAGTATGTGGAATCAGGCGGTGGACAGCTATGATCCTGATGTGCGCAT 19395 ||| || |||| ||| |||||||||| || ||||| |||||||| || || || || Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 19396 TATTGAAAACCATGGTGTGGAGGATGAATTGCCAAACTATTGCTTTCCGTT----GAATG 19451 || || || ||| || || || ||| | ||||| |||||||||||||| | ||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443 Query 19452 GTGTGGGATTGACAGACACTTACCAGGGTGTTAAAGTTAAAACAGATGCAGGTTCTGAAA 19511 | | ||||| | ||| | |||||| | |||| || || | | || Sbjct 16444 TTCTCCTATTGATT-ATACT------GCTGTTAA--TCAAAATGGA--CAAGCAATCAAT 16492 Query 19512 AGTGGGACAAAGATGACAC--CACAGTTAGTAAT--GCTAATGAAATCCATGTAGGCAAT 19567 | |||| | || | | ||| | | || || || ||||| || | ||| Sbjct 16493 A-----ACAA---TAACCCTGCGCAGGTTCTTATAGGCAAAGGAAAT----GTTG--AAT 16538 Query 19568 CCTTTTGCCATGGAAATCAACATCCAAGCCAACCTGTGGAGGAACTTCCTCTATGCCAAT 19627 | |||||||||||||| ||||||||||||| ||| || || ||| | ||| Sbjct 16539 GC-------ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAAT 16591 Query 19628 GTTGCCCTCTATTTGCCTGATAAATACAAATACACACCGGCCAACATCACCCTGCC-CAC 19686 | || || ||| |||| ||||| | ||| ||| || || || | |||| || Sbjct 16592 ATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAG 16651 Query 19687 CAACNNNNNNNNNNNCGAGTACATGAACGGCCGGGTGGTGGCGCCCTCG--CTGGTGGAC 19744 | | | |||||||| || | | ||| | ||||| || Sbjct 16652 GATCAGCGGCTATAT-GCTTACATGAATTCTCGCAT--TCCAGCCGGGGGTCTGGTAGAG 16708 Query 19745 GCCTACATTAACATTGGGGCGCGCTGGTCGCTGGACCCCATGGACAACGTAAATCCCTTC 19804 | || || ||||| || | | ||||| | || ||||||| || ||||| || Sbjct 16709 GATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTT 16768 Query 19805 AACCACCACCGCAATGCGGGCTTGCGCTACCGCTCCATGCTCCTGGGCAACGGGCGCTAC 19864 || || ||| | ||| | || ||| | ||| | || ||| | || || || ||||| Sbjct 16769 AATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTAT 16828 Query 19865 GTGCCATTCCACATCCAGGTGCCCCAGAAATTTTTTGCCATTAAGAGCCTCCTGCTCCTG 19924 | | || || || ||||| || || || |||||||| |||| || | || || || Sbjct 16829 GCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTA 16888 Query 19925 CCCGGGTCCTACACCTACGAGTGGAACTTCCGCAAGGACGTCAACATGATCCTGCAGAGT 19984 || || || |||| ||||| ||| || | || || || |||||||| |||||||| Sbjct 16889 CCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGT 16948 Query 19985 TCCCTTGGCAACGACCTGCGCACAGACGGGGCCTCCATCACCTTCACCAGCATTAACCTC 20044 | |||||||| || ||| | ||||| || || | || || |||||||| ||| Sbjct 16949 ACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTA 17008 Query 20045 TACGCCACCTTCTTCCCCATGGCGCACAACACCGCCTCCACGCTTGAGGCCATGCTGCGC 20104 | || || ||||| || ||| | || ||||| || || || || || | ||||| ||| Sbjct 17009 TTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGC 17068 Query 20105 AACGACACCAATGACCAATCCTTCAACGACTACCTCTCGGCGGCCAACATGCTCTATCCC 20164 || || || || || |||||| |||||| || || | |||||||| ||| | Sbjct 17069 AATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCT 17128 Query 20165 ATCCCGGCCAACGCCACCAAC-GTGCCCATCTCCATCCCCTCGCGCAACTGGGCCGCCTT 20223 || || | | | | |||| ||||| ||||| || || | | || ||||| ||||| Sbjct 17129 ATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTT 17187 Query 20224 TCGCGGCTGGTCCTTCACGCGTCTCAAGACCAAAG-AGACGCCCTCGCTGGGCTCCGGGT 20282 | | || ||| | || || | || || || | || | || || | | ||||| | | Sbjct 17188 TAGAGGTTGGGCATTTACTAGACTAAA-ACAACAGGAAACACCAACCATTGGCTCTGCAT 17246 Query 20283 TCGACCCCTACTTCGTCTACTCGGGCTCCATCCCCTACCTCGACGGNNNNNNNNNNNNNN 20342 | ||||| ||||| ||||||||||| ||||| || || | Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTAT 17306 Query 20343 NNNNNNNNNNNAAGAAGGTCTCCATCACCTTCGACTCTTCCGTCAGCTGGCCCGGCAACG 20402 | ||||| |||| || || ||||| || || ||||| || || | Sbjct 17307 CTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATG 17366 Query 20403 ACCGGCTCCTGACGCCCAACGAGTTCGAAATCAAGCGCACCGTCGACGGCGAGGGATACA 20462 || | || | | || || || || | || || | || |||| || || || | Sbjct 17367 ACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATA 17426 Query 20463 ACGTGGCCCAGTGCAACATGACCAAGGACTGGTTCCTGGTCCAGATGCTGGCCCACTACA 20522 || | ||| ||| || || ||||| |||| || | || ||||| || ||||||| Sbjct 17427 ACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACA 17486 Query 20523 ACATCGGCTACCAGGGCTTCTACGTGCCCGAGGGCTACAAGGACCGCATGTACTCCTTCT 20582 | ||||| ||||| || || || | ||| | || || || | |||| ||||| | Sbjct 17487 ATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTT 17546 Query 20583 TCCGCAACTTCCAGCCCATGAGCCGCCAGGTGGTGGA-CGAGGTTA-ACTACAAGGACTA 20640 | | || || | |||||| | | || || ||||| | ||| | || || | || Sbjct 17547 TAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAA--AATA 17604 Query 20641 CCAGGCCGTCACCCTGGCCTACCAACACAACAACTCGGGCTTCGTTGGATACC---TCGC 20697 || |||| | || || || || || || || || | || | ||| | Sbjct 17605 TCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTT---TTAAAAACCATTATGG 17661 Query 20698 GCCCACTATGCGCCAGGGCCAGCCCTACCCCGCCAACTACCCCTACCCGCTCATCGG-CA 20756 ||| | ||| || ||||| || || ||| |||| || | |||||||||||| | Sbjct 17662 ACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGA 17721 Query 20757 AGAGCGCCGTTACCAGCGTCACCCAGAAAAAGTTCATCTGCGACAGGGTCATGTGGCGCA 20816 | || || | || | | | || |||| ||| || | || ||||| ||||| | | Sbjct 17722 ACAG-GCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGA 17780 Query 20817 TCCCCTTCTCCAGCAACTTCATGTCCATGGGCGCGCTCACCGACCTCGGCCAGAACATGC 20876 | || |||||| |||||| ||||||||||| | || || || || || || || ||| Sbjct 17781 TTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGC 17840 Query 20877 TCTATGCTAACTCCGCCCACGCGCTAGACATGAATTTCGAAGTCGACCCCATGGATGAGT 20936 | ||||| || || || || || ||||||||| ||||||| || | ||||| || Sbjct 17841 TATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAAC 17900 Query 20937 CCACCCTTCTCTATGTTG-TCTTCGANNNNNNNNNNNNNNNCCGAGTGCACCAGCCCCAC 20995 | || |||| ||| || | || || | ||||||| ||||| || Sbjct 17901 CAACTTATCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAA 17959 Query 20996 CGCGGCGTCATTGAGGCCGTCTACCTGCGCACCCCCTTCTCAGCCGGTAACGCCACCACA 21055 || || ||||| || | | || || | |||||||| || || ||||||||| | ||| Sbjct 17960 CGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACA 18019 Query 21056 TAAAT 21060 ||||| Sbjct 18020 TAAAT 18024 Score = 95.1 bits (104), Expect = 3e-15 Identities = 245/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 4096 GGGGTGGTGTTGTAAATCACCCAGTCATAGCAGGGACGCAGGGCGTGGTGTTGCACA-AT 4154 ||||||||| |||| | | ||| ||||| | | | | || |||| ||| | || Sbjct 3622 GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGTAG-GCAAAGAT 3680 Query 4155 ATCTTTGAGGAGGAGACTGATGGCCACGGGCAGCCCTTTGGTGTAGGTGTTTACAAACCT 4214 |||||| | | || |||| || | ||| || ||||| || || || || | ||| || Sbjct 3681 ATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCT 3740 Query 4215 GTTGAGCTGGGAGGGATGCATGCGGGGGGAGATGAGGTGCATCTTAGCCTGGATCTTCAG 4274 ||| ||||| | ||| ||||| |||| | | || ||||| || || || || Sbjct 3741 GTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAG 3800 Query 4275 ATTGGCGATGTTACCGCCCAGATCCCGCCTGGGATTCATGTTGTGCAGGACCACCAGCAC 4334 ||| || || || | | ||| | || ||||| || || | ||||| | || Sbjct 3801 TGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAG 3860 Query 4335 GGTGTATCCGGTGCACTTGGGGAATTTGTCATGCAACTTGGAAGGGAAGGCATGAAAGAA 4394 ||| ||| ||||| ||| |||| ||| | || ||||| || || ||||| || Sbjct 3861 ATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAA 3920 Query 4395 TTTGG--AGACGCCCTTGTGGCCGCCCAGGTTTTCCATGCACTCATCCATGATAATGGCT 4452 ||| | | | | | ||| || || | |||||||| |||||||| |||||||||||| Sbjct 3921 TTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCT 3978 Query 4453 ATGGGCCCG 4461 ||||| ||| Sbjct 3979 ATGGGTCCG 3987 Score = 86.0 bits (94), Expect = 1e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 6511 AGGGACTAAGGGGCGTGCCCCAGGGCATGGGGTGGGTGAGCGCGGAGGCGTACATGCCGC 6570 ||||| |||| || | ||| |||||||||| || || | ||| ||| ||||| ||| Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096 Query 6571 AGATGTCGTAGACGTAGAGGGGCTCATCAAGGATGCCAATGTAGGTGGGGTAGCAGCGGC 6630 | || || || || || | || || |||| | || ||||| ||||||||||| || | Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156 Query 6631 CCCCGCGGATGCTGGCGCGCACGTAGTCATACAACTCGTGCGAGGGGGCGAGGAG 6685 |||| | |||||| | | || | ||||| | ||||| || ||||| || || Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Score = 80.6 bits (88), Expect = 6e-11 Identities = 125/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 18245 AAGATGGCCACCCCATCGATGCTGCCCCAGTGGGCGTACATGCACATCGCCGGACAGGAC 18304 ||||||||||| || |||||||| || || ||| | ||| | || ||||| ||||| || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18305 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGCGCCACAGACACCTACTTC 18364 ||||| || || | ||| | || || || || |||| || || || ||||| Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430 Query 18365 AGTCTGGGGAACAAGTTTAGGAACCCCACGGTGGCGCCTACCCACGATGTGACCACCGA 18423 || | | || ||||| || || ||||| ||||| || |||||||| || || || Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114970124978696