Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003266.2
Length=35994
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 311 2e-80
>seq4931
Length=27746
Score = 311 bits (344), Expect = 2e-80
Identities = 1230/1925 (64%), Gaps = 64/1925 (3%)
Strand=Plus/Plus
Query 19156 GCCTAACAGACCCAACTACATTGGCTTCAGAGACAATTTTATCGGGCTCATGTACTACAA 19215
||| ||||| || || || || || || || || || ||||||||| | |||| || ||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 19216 CAGCACTGGCAATATGGGGGTGCTGGCCGGTCAGGCCTCTCAGCTGAATGCTGTGGTTGA 19275
||| | | ||||| |||| || | |||||||| | || ||||| |||||||| | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 19276 CTTGCAAGACAGAAACACTGAACTGTCCTACCAGCTCTTGCTTGACTCTCTGGGTGACAG 19335
| | ||||||||||| || ||| |||| || ||||| || | || | | || ||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 19336 AACCCGGTATTTCAGTATGTGGAATCAGGCGGTGGACAGCTATGATCCTGATGTGCGCAT 19395
||| || |||| ||| |||||||||| || ||||| |||||||| || || || ||
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 19396 TATTGAAAACCATGGTGTGGAGGATGAATTGCCAAACTATTGCTTTCCGTT----GAATG 19451
|| || || ||| || || || ||| | ||||| |||||||||||||| | |||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443
Query 19452 GTGTGGGATTGACAGACACTTACCAGGGTGTTAAAGTTAAAACAGATGCAGGTTCTGAAA 19511
| | ||||| | ||| | |||||| | |||| || || | | ||
Sbjct 16444 TTCTCCTATTGATT-ATACT------GCTGTTAA--TCAAAATGGA--CAAGCAATCAAT 16492
Query 19512 AGTGGGACAAAGATGACAC--CACAGTTAGTAAT--GCTAATGAAATCCATGTAGGCAAT 19567
| |||| | || | | ||| | | || || || ||||| || | |||
Sbjct 16493 A-----ACAA---TAACCCTGCGCAGGTTCTTATAGGCAAAGGAAAT----GTTG--AAT 16538
Query 19568 CCTTTTGCCATGGAAATCAACATCCAAGCCAACCTGTGGAGGAACTTCCTCTATGCCAAT 19627
| |||||||||||||| ||||||||||||| ||| || || ||| | |||
Sbjct 16539 GC-------ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAAT 16591
Query 19628 GTTGCCCTCTATTTGCCTGATAAATACAAATACACACCGGCCAACATCACCCTGCC-CAC 19686
| || || ||| |||| ||||| | ||| ||| || || || | |||| ||
Sbjct 16592 ATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAG 16651
Query 19687 CAACNNNNNNNNNNNCGAGTACATGAACGGCCGGGTGGTGGCGCCCTCG--CTGGTGGAC 19744
| | | |||||||| || | | ||| | ||||| ||
Sbjct 16652 GATCAGCGGCTATAT-GCTTACATGAATTCTCGCAT--TCCAGCCGGGGGTCTGGTAGAG 16708
Query 19745 GCCTACATTAACATTGGGGCGCGCTGGTCGCTGGACCCCATGGACAACGTAAATCCCTTC 19804
| || || ||||| || | | ||||| | || ||||||| || ||||| ||
Sbjct 16709 GATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTT 16768
Query 19805 AACCACCACCGCAATGCGGGCTTGCGCTACCGCTCCATGCTCCTGGGCAACGGGCGCTAC 19864
|| || ||| | ||| | || ||| | ||| | || ||| | || || || |||||
Sbjct 16769 AATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTAT 16828
Query 19865 GTGCCATTCCACATCCAGGTGCCCCAGAAATTTTTTGCCATTAAGAGCCTCCTGCTCCTG 19924
| | || || || ||||| || || || |||||||| |||| || | || || ||
Sbjct 16829 GCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTA 16888
Query 19925 CCCGGGTCCTACACCTACGAGTGGAACTTCCGCAAGGACGTCAACATGATCCTGCAGAGT 19984
|| || || |||| ||||| ||| || | || || || |||||||| ||||||||
Sbjct 16889 CCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGT 16948
Query 19985 TCCCTTGGCAACGACCTGCGCACAGACGGGGCCTCCATCACCTTCACCAGCATTAACCTC 20044
| |||||||| || ||| | ||||| || || | || || |||||||| |||
Sbjct 16949 ACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTA 17008
Query 20045 TACGCCACCTTCTTCCCCATGGCGCACAACACCGCCTCCACGCTTGAGGCCATGCTGCGC 20104
| || || ||||| || ||| | || ||||| || || || || || | ||||| |||
Sbjct 17009 TTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGC 17068
Query 20105 AACGACACCAATGACCAATCCTTCAACGACTACCTCTCGGCGGCCAACATGCTCTATCCC 20164
|| || || || || |||||| |||||| || || | |||||||| ||| |
Sbjct 17069 AATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCT 17128
Query 20165 ATCCCGGCCAACGCCACCAAC-GTGCCCATCTCCATCCCCTCGCGCAACTGGGCCGCCTT 20223
|| || | | | | |||| ||||| ||||| || || | | || ||||| |||||
Sbjct 17129 ATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTT 17187
Query 20224 TCGCGGCTGGTCCTTCACGCGTCTCAAGACCAAAG-AGACGCCCTCGCTGGGCTCCGGGT 20282
| | || ||| | || || | || || || | || | || || | | ||||| | |
Sbjct 17188 TAGAGGTTGGGCATTTACTAGACTAAA-ACAACAGGAAACACCAACCATTGGCTCTGCAT 17246
Query 20283 TCGACCCCTACTTCGTCTACTCGGGCTCCATCCCCTACCTCGACGGNNNNNNNNNNNNNN 20342
| ||||| ||||| ||||||||||| ||||| || || |
Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTAT 17306
Query 20343 NNNNNNNNNNNAAGAAGGTCTCCATCACCTTCGACTCTTCCGTCAGCTGGCCCGGCAACG 20402
| ||||| |||| || || ||||| || || ||||| || || |
Sbjct 17307 CTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATG 17366
Query 20403 ACCGGCTCCTGACGCCCAACGAGTTCGAAATCAAGCGCACCGTCGACGGCGAGGGATACA 20462
|| | || | | || || || || | || || | || |||| || || || |
Sbjct 17367 ACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATA 17426
Query 20463 ACGTGGCCCAGTGCAACATGACCAAGGACTGGTTCCTGGTCCAGATGCTGGCCCACTACA 20522
|| | ||| ||| || || ||||| |||| || | || ||||| || |||||||
Sbjct 17427 ACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACA 17486
Query 20523 ACATCGGCTACCAGGGCTTCTACGTGCCCGAGGGCTACAAGGACCGCATGTACTCCTTCT 20582
| ||||| ||||| || || || | ||| | || || || | |||| ||||| |
Sbjct 17487 ATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTT 17546
Query 20583 TCCGCAACTTCCAGCCCATGAGCCGCCAGGTGGTGGA-CGAGGTTA-ACTACAAGGACTA 20640
| | || || | |||||| | | || || ||||| | ||| | || || | ||
Sbjct 17547 TAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAA--AATA 17604
Query 20641 CCAGGCCGTCACCCTGGCCTACCAACACAACAACTCGGGCTTCGTTGGATACC---TCGC 20697
|| |||| | || || || || || || || || | || | ||| |
Sbjct 17605 TCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTT---TTAAAAACCATTATGG 17661
Query 20698 GCCCACTATGCGCCAGGGCCAGCCCTACCCCGCCAACTACCCCTACCCGCTCATCGG-CA 20756
||| | ||| || ||||| || || ||| |||| || | |||||||||||| |
Sbjct 17662 ACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGA 17721
Query 20757 AGAGCGCCGTTACCAGCGTCACCCAGAAAAAGTTCATCTGCGACAGGGTCATGTGGCGCA 20816
| || || | || | | | || |||| ||| || | || ||||| ||||| | |
Sbjct 17722 ACAG-GCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGA 17780
Query 20817 TCCCCTTCTCCAGCAACTTCATGTCCATGGGCGCGCTCACCGACCTCGGCCAGAACATGC 20876
| || |||||| |||||| ||||||||||| | || || || || || || || |||
Sbjct 17781 TTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGC 17840
Query 20877 TCTATGCTAACTCCGCCCACGCGCTAGACATGAATTTCGAAGTCGACCCCATGGATGAGT 20936
| ||||| || || || || || ||||||||| ||||||| || | ||||| ||
Sbjct 17841 TATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAAC 17900
Query 20937 CCACCCTTCTCTATGTTG-TCTTCGANNNNNNNNNNNNNNNCCGAGTGCACCAGCCCCAC 20995
| || |||| ||| || | || || | ||||||| ||||| ||
Sbjct 17901 CAACTTATCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAA 17959
Query 20996 CGCGGCGTCATTGAGGCCGTCTACCTGCGCACCCCCTTCTCAGCCGGTAACGCCACCACA 21055
|| || ||||| || | | || || | |||||||| || || ||||||||| | |||
Sbjct 17960 CGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACA 18019
Query 21056 TAAAT 21060
|||||
Sbjct 18020 TAAAT 18024
Score = 95.1 bits (104), Expect = 3e-15
Identities = 245/369 (66%), Gaps = 6/369 (2%)
Strand=Plus/Plus
Query 4096 GGGGTGGTGTTGTAAATCACCCAGTCATAGCAGGGACGCAGGGCGTGGTGTTGCACA-AT 4154
||||||||| |||| | | ||| ||||| | | | | || |||| ||| | ||
Sbjct 3622 GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGTAG-GCAAAGAT 3680
Query 4155 ATCTTTGAGGAGGAGACTGATGGCCACGGGCAGCCCTTTGGTGTAGGTGTTTACAAACCT 4214
|||||| | | || |||| || | ||| || ||||| || || || || | ||| ||
Sbjct 3681 ATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCT 3740
Query 4215 GTTGAGCTGGGAGGGATGCATGCGGGGGGAGATGAGGTGCATCTTAGCCTGGATCTTCAG 4274
||| ||||| | ||| ||||| |||| | | || ||||| || || || ||
Sbjct 3741 GTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAG 3800
Query 4275 ATTGGCGATGTTACCGCCCAGATCCCGCCTGGGATTCATGTTGTGCAGGACCACCAGCAC 4334
||| || || || | | ||| | || ||||| || || | ||||| | ||
Sbjct 3801 TGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAG 3860
Query 4335 GGTGTATCCGGTGCACTTGGGGAATTTGTCATGCAACTTGGAAGGGAAGGCATGAAAGAA 4394
||| ||| ||||| ||| |||| ||| | || ||||| || || ||||| ||
Sbjct 3861 ATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAA 3920
Query 4395 TTTGG--AGACGCCCTTGTGGCCGCCCAGGTTTTCCATGCACTCATCCATGATAATGGCT 4452
||| | | | | | ||| || || | |||||||| |||||||| ||||||||||||
Sbjct 3921 TTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCT 3978
Query 4453 ATGGGCCCG 4461
||||| |||
Sbjct 3979 ATGGGTCCG 3987
Score = 86.0 bits (94), Expect = 1e-12
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 6511 AGGGACTAAGGGGCGTGCCCCAGGGCATGGGGTGGGTGAGCGCGGAGGCGTACATGCCGC 6570
||||| |||| || | ||| |||||||||| || || | ||| ||| ||||| |||
Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096
Query 6571 AGATGTCGTAGACGTAGAGGGGCTCATCAAGGATGCCAATGTAGGTGGGGTAGCAGCGGC 6630
| || || || || || | || || |||| | || ||||| ||||||||||| || |
Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156
Query 6631 CCCCGCGGATGCTGGCGCGCACGTAGTCATACAACTCGTGCGAGGGGGCGAGGAG 6685
|||| | |||||| | | || | ||||| | ||||| || ||||| || ||
Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211
Score = 80.6 bits (88), Expect = 6e-11
Identities = 125/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 18245 AAGATGGCCACCCCATCGATGCTGCCCCAGTGGGCGTACATGCACATCGCCGGACAGGAC 18304
||||||||||| || |||||||| || || ||| | ||| | || ||||| ||||| ||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 18305 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGCGCCACAGACACCTACTTC 18364
||||| || || | ||| | || || || || |||| || || || |||||
Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430
Query 18365 AGTCTGGGGAACAAGTTTAGGAACCCCACGGTGGCGCCTACCCACGATGTGACCACCGA 18423
|| | | || ||||| || || ||||| ||||| || |||||||| || || ||
Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114970124978696
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