Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 9e-24
seq20 120 4e-22
seq22 114 2e-20
seq17 111 2e-19
seq190 96.9 4e-15
seq113 95.1 2e-14
seq83 93.3 5e-14
>seq3
Length=37708006
Score = 125 bits (138), Expect = 9e-24
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| ||| ||| |||||||||| || ||||||||||||| |||
Sbjct 8429628 GTTACTTTCTATGATGTATATATTGTTCTACAAGCTTTTATACTGACTACTGCAGTATTT 8429569
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || |||||||||||| |||||||||||||| ||| ||| | ||||
Sbjct 8429568 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 8429510
Score = 95.1 bits (104), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 8440898 TGCTCGTCCATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCGTCTGCCAGCGTGCAC 8440839
Query 188232 ATACGAATGG 188241
|| || ||||
Sbjct 8440838 ATCCGCATGG 8440829
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437
|||||| | || ||||||||||||||||||||| |||||||||| |||||||| || ||
Sbjct 8433237 GGATCTTTGGGTTTGATTTTCGCATTGACTTTAAACAGACATAAGCATCCCCTTAACCTC 8433178
Query 188438 TACCTACTTTGTGGATTT 188455
||||| || | |||||||
Sbjct 8433177 TACCTGCTATTTGGATTT 8433160
>seq20
Length=25211774
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||||||||| ||||| | || || ||||||||||| || ||||| || || ||||| |
Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || ||||| || || |||||||||||||| || || || |||||||
Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600
Query 33724 CAATAAGTCTCTCTCC 33739
| | || || |||||
Sbjct 21308601 CTACAACTCGTTCTCC 21308616
Score = 89.7 bits (98), Expect = 6e-13
Identities = 112/152 (74%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 33222 GCATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GAC 33278
||||| | ||| || | |||||| |||| || | ||| ||| ||| | || |||
Sbjct 21306504 GCATTCA-GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGAC 21306562
Query 33279 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCC 33338
|| ||||||||| | || || || || || | || || || || ||||| || ||||||
Sbjct 21306563 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCC 21306622
Query 33339 AATGATATATTTTCCATGAAATCAAACGGATT 33370
| ||| ||||| |||||||||||||| |||||
Sbjct 21306623 AGTGAAATATTCTCCATGAAATCAAATGGATT 21306654
>seq22
Length=17426531
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172
|||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232
||| ||| ||||||||||| ||||| || || || || || ||||| || | | || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283
| || | |||||||| | ||| ||||||| | | || | ||| || ||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490
Score = 113 bits (124), Expect = 6e-20
Identities = 91/110 (83%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497
|||||||||||||||| || ||||||||||| ||||| ||||| || ||
Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678
|| ||| |||| || ||||| || || | || || ||||| | |||||| || || |
Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTGGCTAGGTCACAACTGGCTTCCAGG 1401813
Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738
|| || |||||||| ||||||||||| | |||||||| || ||||| || || |||
Sbjct 1401814 GCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACTGAGCTTCTGGACTCTCA 1401873
Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798
|| || || | | || ||||| || || |||| |||||||| ||||| || || ||
Sbjct 1401874 AAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGGG 1401933
Query 62799 CTATGTCTCTTATTAGA 62815
| ||| | ||||| ||
Sbjct 1401934 CGATGGCGTTTATTTGA 1401950
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| || ||||| |||||||||||||| | || |||||||| | |
Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
|| || || |||||||| ||||| || | ||| ||||| | | || || |||||||
Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216
Query 63383 CGGTTCCAAGTATATGGC 63400
||||| | ||| || ||
Sbjct 1409217 AGGTTCTAGGTAAATAGC 1409234
>seq17
Length=26966924
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| ||
Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||| ||||| | ||| || ||||| || ||||| | |||||||||||||||||||||
Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884
>seq190
Length=3085523
Score = 96.9 bits (106), Expect = 4e-15
Identities = 146/207 (71%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406
||| |||||||||| |||||||||| | | ||| | | || |||||||| |||| |||
Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334
Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466
|| | || || | ||| | ||| || ||| | | || || || | |||||
Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394
Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31523
|||||||||||| ||||| ||||| |||||| ||| || | |||| | || ||
Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454
Query 31524 AGACCTAGGAGCTATTCTACCATAGCA 31550
||| | ||||||| ||| ||||||||
Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481
>seq113
Length=6198913
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTAT 31405
||| |||||||||| |||||||||| | | | | | | || |||||||| |||| ||
Sbjct 4701979 TTGAACTTCTTCAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGAT 4702038
Query 31406 CTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTC 31465
| || | || || | |||| | ||| ||| ||| | | || || || | ||||
Sbjct 4702039 CACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTC 4702098
Query 31466 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 31522
||||||||||||| ||||| ||||| |||||| |||||| | |||| | || |
Sbjct 4702099 CCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGC 4702158
Query 31523 CAGACCTAGGAGCTATTCTACCATAGCA 31550
|| | | ||||||| ||| ||||||||
Sbjct 4702159 CAAAACGTGGAGCTACTCTTCCATAGCA 4702186
>seq83
Length=9551901
Score = 93.3 bits (102), Expect = 5e-14
Identities = 145/207 (70%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406
||| |||||||||| |||||||||| | || | | | || |||||||| |||||||
Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911
Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466
|| | || || | |||| | ||| ||| ||| | | || || || | || ||
Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851
Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31523
|||||||||||| | ||| ||||| |||||| ||| || | |||| | || ||
Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791
Query 31524 AGACCTAGGAGCTATTCTACCATAGCA 31550
||| | ||||||| ||| ||||||||
Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCA 3111764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629304353765040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |