Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 125 9e-24 seq20 120 4e-22 seq22 114 2e-20 seq17 111 2e-19 seq190 96.9 4e-15 seq113 95.1 2e-14 seq83 93.3 5e-14 >seq3 Length=37708006 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| ||| |||||||||| || ||||||||||||| ||| Sbjct 8429628 GTTACTTTCTATGATGTATATATTGTTCTACAAGCTTTTATACTGACTACTGCAGTATTT 8429569 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 8429568 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 8429510 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| Sbjct 8440898 TGCTCGTCCATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCGTCTGCCAGCGTGCAC 8440839 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 8440838 ATCCGCATGG 8440829 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || ||||||||||||||||||||| |||||||||| |||||||| || || Sbjct 8433237 GGATCTTTGGGTTTGATTTTCGCATTGACTTTAAACAGACATAAGCATCCCCTTAACCTC 8433178 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| || | ||||||| Sbjct 8433177 TACCTGCTATTTGGATTT 8433160 >seq20 Length=25211774 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | || || ||||||||||| || ||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || ||||| || || |||||||||||||| || || || ||||||| Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 33222 GCATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GAC 33278 ||||| | ||| || | |||||| |||| || | ||| ||| ||| | || ||| Sbjct 21306504 GCATTCA-GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGAC 21306562 Query 33279 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCC 33338 || ||||||||| | || || || || || | || || || || ||||| || |||||| Sbjct 21306563 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCC 21306622 Query 33339 AATGATATATTTTCCATGAAATCAAACGGATT 33370 | ||| ||||| |||||||||||||| ||||| Sbjct 21306623 AGTGAAATATTCTCCATGAAATCAAATGGATT 21306654 >seq22 Length=17426531 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| ||||||||||| ||||| || || || || || ||||| || | | || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||| ||||||| | | || | ||| || |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 113 bits (124), Expect = 6e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 |||||||||||||||| || ||||||||||| ||||| ||||| || || Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 || ||| |||| || ||||| || || | || || ||||| | |||||| || || | Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTGGCTAGGTCACAACTGGCTTCCAGG 1401813 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || || |||||||| ||||||||||| | |||||||| || ||||| || || ||| Sbjct 1401814 GCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACTGAGCTTCTGGACTCTCA 1401873 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || || || | | || ||||| || || |||| |||||||| ||||| || || || Sbjct 1401874 AAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGGG 1401933 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 1401934 CGATGGCGTTTATTTGA 1401950 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| || ||||| |||||||||||||| | || |||||||| | | Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216 Query 63383 CGGTTCCAAGTATATGGC 63400 ||||| | ||| || || Sbjct 1409217 AGGTTCTAGGTAAATAGC 1409234 >seq17 Length=26966924 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| | ||||||||||||||||||||| Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884 >seq190 Length=3085523 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406 ||| |||||||||| |||||||||| | | ||| | | || |||||||| |||| ||| Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334 Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466 || | || || | ||| | ||| || ||| | | || || || | ||||| Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394 Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31523 |||||||||||| ||||| ||||| |||||| ||| || | |||| | || || Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454 Query 31524 AGACCTAGGAGCTATTCTACCATAGCA 31550 ||| | ||||||| ||| |||||||| Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481 >seq113 Length=6198913 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTAT 31405 ||| |||||||||| |||||||||| | | | | | | || |||||||| |||| || Sbjct 4701979 TTGAACTTCTTCAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGAT 4702038 Query 31406 CTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTC 31465 | || | || || | |||| | ||| ||| ||| | | || || || | |||| Sbjct 4702039 CACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTC 4702098 Query 31466 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 31522 ||||||||||||| ||||| ||||| |||||| |||||| | |||| | || | Sbjct 4702099 CCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGC 4702158 Query 31523 CAGACCTAGGAGCTATTCTACCATAGCA 31550 || | | ||||||| ||| |||||||| Sbjct 4702159 CAAAACGTGGAGCTACTCTTCCATAGCA 4702186 >seq83 Length=9551901 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406 ||| |||||||||| |||||||||| | || | | | || |||||||| ||||||| Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911 Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466 || | || || | |||| | ||| ||| ||| | | || || || | || || Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851 Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31523 |||||||||||| | ||| ||||| |||||| ||| || | |||| | || || Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791 Query 31524 AGACCTAGGAGCTATTCTACCATAGCA 31550 ||| | ||||||| ||| |||||||| Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCA 3111764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629304353765040